Wall clock time and date at job start Tue Mar 31 2020 12:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47082 * 2 1 4 4 C 1.50702 * 109.46969 * 239.99784 * 2 1 3 5 5 O 1.21278 * 119.99928 * 246.17056 * 4 2 1 6 6 N 1.34776 * 119.99804 * 66.16881 * 4 2 1 7 7 C 1.37138 * 120.00489 * 5.78794 * 6 4 2 8 8 H 1.08001 * 119.99410 * 25.10263 * 7 6 4 9 9 C 1.38883 * 120.00281 * 205.10743 * 7 6 4 10 10 N 1.31426 * 120.00199 * 5.74047 * 9 7 6 11 11 Si 1.86801 * 120.00126 * 185.74024 * 9 7 6 12 12 H 1.48499 * 109.46989 * 59.99731 * 11 9 7 13 13 H 1.48502 * 109.47087 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47168 * 299.99780 * 11 9 7 15 15 C 1.39788 * 119.99865 * 185.78530 * 6 4 2 16 16 C 1.38959 * 120.08139 * 245.18081 * 15 6 4 17 17 C 1.38086 * 119.92135 * 179.79268 * 16 15 6 18 18 C 1.38305 * 120.07901 * 0.45910 * 17 16 15 19 19 C 1.38309 * 120.15395 * 359.79335 * 18 17 16 20 20 C 1.38079 * 120.08229 * 359.97438 * 19 18 17 21 21 C 1.50702 * 109.46977 * 119.99973 * 2 1 3 22 22 C 1.38381 * 119.92478 * 59.99785 * 21 2 1 23 23 C 1.38340 * 120.30485 * 179.72147 * 22 21 2 24 24 C 1.37967 * 120.14966 * 359.97438 * 23 22 21 25 25 C 1.39613 * 119.84729 * 0.02562 * 24 23 22 26 26 C 1.43202 * 120.14991 * 179.97438 * 25 24 23 27 27 N 5.95822 * 123.11668 * 83.85161 * 2 1 3 28 28 C 1.37927 * 119.92228 * 239.72085 * 21 2 1 29 29 H 1.09000 * 109.47225 * 294.87817 * 1 2 3 30 30 H 1.08999 * 109.47359 * 54.88037 * 1 2 3 31 31 H 1.09000 * 109.47705 * 174.87747 * 1 2 3 32 32 H 0.96998 * 119.99865 * 184.99744 * 10 9 7 33 33 H 1.08001 * 120.03605 * 0.02562 * 16 15 6 34 34 H 1.07995 * 119.95701 * 180.22909 * 17 16 15 35 35 H 1.07999 * 119.91889 * 179.76352 * 18 17 16 36 36 H 1.08004 * 119.95754 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.04198 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.84626 * 359.74691 * 22 21 2 39 39 H 1.08003 * 119.92338 * 180.02562 * 23 22 21 40 40 H 1.08005 * 120.07250 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.07761 * 0.25612 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6345 -1.7576 -1.1227 6 7 1.8122 -0.1821 -2.4507 7 6 1.2375 1.0575 -2.5677 8 1 1.3255 1.7717 -1.7624 9 6 0.5421 1.3944 -3.7218 10 7 0.3377 0.4902 -4.6534 11 14 -0.1028 3.1327 -3.9499 12 1 1.0327 4.0893 -3.9229 13 1 -0.8035 3.2334 -5.2553 14 1 -1.0496 3.4573 -2.8529 15 6 2.1699 -0.8977 -3.5970 16 6 3.1676 -0.4159 -4.4357 17 6 3.5213 -1.1276 -5.5650 18 6 2.8774 -2.3138 -5.8667 19 6 1.8803 -2.7936 -5.0369 20 6 1.5247 -2.0897 -3.9035 21 6 2.0323 -0.7104 1.2305 22 6 1.6970 -2.0353 1.4480 23 6 2.1585 -2.6967 2.5719 24 6 2.9575 -2.0386 3.4840 25 6 3.2997 -0.7020 3.2709 26 6 4.1282 -0.0125 4.2136 27 7 4.7852 0.5345 4.9617 28 6 2.8299 -0.0403 2.1344 29 1 -0.3634 0.4323 0.9323 30 1 -0.3634 0.5912 -0.8406 31 1 -0.3634 -1.0235 -0.0918 32 1 -0.0835 0.7425 -5.4900 33 1 3.6684 0.5122 -4.2026 34 1 4.2992 -0.7556 -6.2152 35 1 3.1534 -2.8664 -6.7526 36 1 1.3792 -3.7201 -5.2758 37 1 0.7457 -2.4648 -3.2562 38 1 1.0724 -2.5553 0.7367 39 1 1.8933 -3.7309 2.7353 40 1 3.3175 -2.5564 4.3609 41 1 3.0911 0.9937 1.9633 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361718222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:21 Heat of formation + Delta-G solvation = 43.174914 kcal Electronic energy + Delta-G solvation = -26056.649328 eV Core-core repulsion = 22480.340249 eV Total energy + Delta-G solvation = -3576.309080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48908 -40.32161 -38.91247 -37.51695 -36.53234 -34.93409 -33.48488 -32.18054 -31.50047 -30.98723 -29.83822 -26.88713 -25.61967 -24.70757 -23.72741 -23.14920 -22.31615 -20.95968 -19.80470 -18.63851 -17.92678 -17.24608 -17.14755 -16.55796 -16.43183 -16.09491 -15.83678 -15.56011 -15.06828 -14.98777 -14.81525 -14.46944 -14.31647 -14.10548 -14.04168 -13.82660 -13.43089 -13.38596 -13.24393 -12.94473 -12.87524 -12.76663 -12.56996 -12.46257 -12.22594 -12.08212 -11.99558 -11.86257 -11.69920 -11.09666 -10.33523 -10.01624 -9.80628 -9.65825 -9.49454 -9.15419 -8.00537 -5.95380 -0.10822 0.43764 0.84054 0.86957 1.46790 1.51362 1.57956 1.59823 1.96917 2.02723 2.32632 2.77849 2.91496 3.10517 3.13225 3.39566 3.75766 3.97071 4.14980 4.27461 4.30998 4.34049 4.38252 4.44456 4.45430 4.50527 4.64627 4.80169 4.88143 4.94772 5.03814 5.06161 5.12816 5.20267 5.34031 5.40893 5.43524 5.48530 5.56221 5.72251 5.73531 5.84720 5.90150 5.95419 6.08865 6.32306 6.43195 6.65144 7.16661 7.57608 7.98801 8.80802 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.004217 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.554224 B = 6638.695795 C = 7740.188320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.047 4.047 3 H 0.102 0.898 4 C 0.468 3.532 5 O -0.610 6.610 6 N -0.422 5.422 7 C -0.353 4.353 8 H 0.111 0.889 9 C 0.008 3.992 10 N -0.874 5.874 11 Si 0.976 3.024 12 H -0.272 1.272 13 H -0.291 1.291 14 H -0.259 1.259 15 C 0.224 3.776 16 C -0.147 4.147 17 C -0.117 4.117 18 C -0.151 4.151 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.073 4.073 22 C -0.058 4.058 23 C -0.120 4.120 24 C -0.063 4.063 25 C -0.047 4.047 26 C 0.285 3.715 27 N -0.466 5.466 28 C -0.067 4.067 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.267 0.733 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 -3.501 6.135 7.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.068 4.068 3 H 0.120 0.880 4 C 0.259 3.741 5 O -0.496 6.496 6 N -0.137 5.137 7 C -0.480 4.480 8 H 0.129 0.871 9 C -0.197 4.197 10 N -0.510 5.510 11 Si 0.800 3.200 12 H -0.197 1.197 13 H -0.217 1.217 14 H -0.184 1.184 15 C 0.132 3.868 16 C -0.167 4.167 17 C -0.136 4.136 18 C -0.169 4.169 19 C -0.137 4.137 20 C -0.136 4.136 21 C -0.073 4.073 22 C -0.077 4.077 23 C -0.138 4.138 24 C -0.083 4.083 25 C -0.050 4.050 26 C -0.029 4.029 27 N -0.142 5.142 28 C -0.088 4.088 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.324 -3.166 7.190 7.863 hybrid contribution -0.686 0.908 -1.015 1.525 sum -0.363 -2.258 6.175 6.585 Atomic orbital electron populations 1.21642 0.91230 1.02139 1.03479 1.19969 0.98516 0.99554 0.88784 0.87990 1.20843 0.82443 0.85595 0.85230 1.90556 1.46059 1.25933 1.87014 1.41508 1.52731 1.16808 1.02687 1.19791 1.31691 0.90310 1.06168 0.87136 1.26005 0.95564 1.01901 0.96201 1.69995 1.40572 1.33789 1.06611 0.85238 0.78639 0.78442 0.77633 1.19729 1.21701 1.18390 1.17458 0.91328 0.90431 0.87540 1.21002 0.98437 1.00045 0.97187 1.21060 1.00468 0.95678 0.96372 1.21131 0.98017 0.97153 1.00616 1.21049 0.98336 0.99959 0.94327 1.20768 0.98655 0.96320 0.97836 1.19417 0.98185 0.94981 0.94758 1.21309 0.96888 0.93453 0.96039 1.21316 0.97821 1.01356 0.93268 1.21396 0.95563 0.91503 0.99814 1.15912 1.01144 0.94454 0.93527 1.25804 0.92307 0.92400 0.92359 1.81237 1.11638 1.09776 1.11580 1.21090 0.95149 1.00430 0.92095 0.89862 0.91290 0.93566 0.92280 0.88468 0.84744 0.83952 0.84923 0.89637 0.86727 0.82354 0.82465 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.70 71.98 0.63 -3.32 16 2 C -0.05 -1.60 2.10 -12.29 -0.03 -1.62 16 3 H 0.10 3.27 6.86 -2.39 -0.02 3.25 16 4 C 0.47 20.54 6.69 87.66 0.59 21.12 16 5 O -0.61 -29.49 14.59 -3.02 -0.04 -29.54 16 6 N -0.42 -19.94 2.69 -458.90 -1.24 -21.18 16 7 C -0.35 -16.17 7.10 84.02 0.60 -15.57 16 8 H 0.11 4.63 6.37 -2.91 -0.02 4.61 16 9 C 0.01 0.38 5.24 84.91 0.44 0.82 16 10 N -0.87 -43.54 10.59 21.65 0.23 -43.31 16 11 Si 0.98 37.20 29.56 68.60 2.03 39.23 16 12 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 13 H -0.29 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 15 C 0.22 10.78 2.59 38.22 0.10 10.88 16 16 C -0.15 -6.67 9.25 22.41 0.21 -6.46 16 17 C -0.12 -4.50 10.04 22.25 0.22 -4.28 16 18 C -0.15 -5.41 10.04 22.30 0.22 -5.18 16 19 C -0.12 -4.62 10.04 22.25 0.22 -4.39 16 20 C -0.12 -5.37 8.89 22.41 0.20 -5.17 16 21 C -0.07 -2.15 4.45 -19.90 -0.09 -2.24 16 22 C -0.06 -1.61 7.91 22.33 0.18 -1.43 16 23 C -0.12 -2.50 10.03 22.23 0.22 -2.28 16 24 C -0.06 -1.21 9.76 22.54 0.22 -0.99 16 25 C -0.05 -1.09 5.73 -21.36 -0.12 -1.21 16 26 C 0.29 7.23 15.33 88.33 1.35 8.58 16 27 N -0.47 -13.65 18.54 19.00 0.35 -13.30 16 28 C -0.07 -1.73 9.38 22.54 0.21 -1.52 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 2.43 6.32 -2.39 -0.02 2.41 16 31 H 0.05 1.46 7.56 -2.39 -0.02 1.44 16 32 H 0.27 13.03 8.32 -92.71 -0.77 12.26 16 33 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 34 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 35 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 36 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.09 4.10 8.06 -2.91 -0.02 4.07 16 38 H 0.11 3.48 7.42 -2.91 -0.02 3.46 16 39 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.14 3.20 7.94 -2.91 -0.02 3.18 16 Total: -1.00 -61.08 355.89 7.76 -53.32 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 1.05 Total: 29.05 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 5.38 Total: -14.27 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -0.66 Total: -77.79 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.04 Total: -29.54 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -61.08 7.76 -53.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.495 kcal (2) G-P(sol) polarization free energy of solvation -61.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds