Wall clock time and date at job start Tue Mar 31 2020 12:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47046 * 2 1 4 4 C 1.50696 * 109.47270 * 119.99709 * 2 1 3 5 5 O 1.21283 * 119.99870 * 46.82814 * 4 2 1 6 6 N 1.34774 * 120.00116 * 227.09726 * 4 2 1 7 7 C 1.37145 * 119.99662 * 180.66311 * 6 4 2 8 8 H 1.08004 * 119.99805 * 106.07655 * 7 6 4 9 9 C 1.38886 * 120.00192 * 286.07008 * 7 6 4 10 10 N 1.31423 * 120.00007 * 9.82465 * 9 7 6 11 11 Si 1.86796 * 120.00155 * 189.82533 * 9 7 6 12 12 H 1.48498 * 109.47366 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47318 * 120.00231 * 11 9 7 14 14 H 1.48502 * 109.47270 * 240.00268 * 11 9 7 15 15 C 1.39780 * 120.00291 * 0.66733 * 6 4 2 16 16 C 1.38958 * 120.08003 * 64.64692 * 15 6 4 17 17 C 1.38081 * 119.92413 * 179.77302 * 16 15 6 18 18 C 1.38310 * 120.07673 * 0.50585 * 17 16 15 19 19 C 1.38306 * 120.15504 * 359.75234 * 18 17 16 20 20 C 1.38082 * 120.07965 * 359.97438 * 19 18 17 21 21 C 1.50698 * 109.47202 * 240.00163 * 2 1 3 22 22 C 1.38380 * 119.92545 * 299.72145 * 21 2 1 23 23 C 1.38345 * 120.30957 * 179.76391 * 22 21 2 24 24 C 1.37968 * 120.14765 * 0.51311 * 23 22 21 25 25 C 1.39621 * 119.84645 * 359.74647 * 24 23 22 26 26 C 1.43200 * 120.15013 * 179.97438 * 25 24 23 27 27 N 5.95835 * 122.91535 * 276.20671 * 2 1 3 28 28 C 1.37930 * 119.92640 * 119.99860 * 21 2 1 29 29 H 1.09003 * 109.47047 * 53.45426 * 1 2 3 30 30 H 1.09003 * 109.46990 * 173.45239 * 1 2 3 31 31 H 1.08999 * 109.47486 * 293.45246 * 1 2 3 32 32 H 0.97004 * 120.00236 * 184.97397 * 10 9 7 33 33 H 1.08004 * 120.03990 * 0.02562 * 16 15 6 34 34 H 1.08001 * 119.96622 * 180.25459 * 17 16 15 35 35 H 1.08001 * 119.91864 * 179.72283 * 18 17 16 36 36 H 1.08007 * 119.95981 * 179.97438 * 19 18 17 37 37 H 1.07994 * 120.04090 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.84526 * 359.97438 * 22 21 2 39 39 H 1.07999 * 119.92760 * 180.25817 * 23 22 21 40 40 H 1.08002 * 120.08025 * 179.71879 * 24 23 22 41 41 H 1.08006 * 120.07349 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.5570 -1.7793 1.5501 6 7 3.0061 -0.1551 1.9787 7 6 3.4727 -0.8080 3.0909 8 1 4.4427 -1.2827 3.0712 9 6 2.6981 -0.8587 4.2425 10 7 1.4479 -0.4545 4.2119 11 14 3.4331 -1.5013 5.8351 12 1 4.8478 -1.8901 5.6059 13 1 3.3737 -0.4395 6.8716 14 1 2.6621 -2.6846 6.2940 15 6 3.5404 1.0861 1.6214 16 6 2.7399 2.2217 1.6447 17 6 3.2722 3.4470 1.2956 18 6 4.5978 3.5432 0.9129 19 6 5.3961 2.4142 0.8834 20 6 4.8719 1.1865 1.2367 21 6 2.0324 -0.7104 -1.2305 22 6 1.7019 -2.0369 -1.4450 23 6 2.1547 -2.6953 -2.5744 24 6 2.9485 -2.0354 -3.4897 25 6 3.2902 -0.6985 -3.2768 26 6 4.1142 -0.0074 -4.2224 27 7 4.7678 0.5408 -4.9726 28 6 2.8252 -0.0385 -2.1374 29 1 -0.3633 0.6120 -0.8256 30 1 -0.3633 -1.0210 -0.1172 31 1 -0.3634 0.4090 0.9427 32 1 0.9285 -0.4217 5.0305 33 1 1.7035 2.1467 1.9395 34 1 2.6517 4.3308 1.3174 35 1 5.0104 4.5022 0.6361 36 1 6.4308 2.4929 0.5837 37 1 5.4957 0.3053 1.2130 38 1 1.0848 -2.5596 -0.7292 39 1 1.8896 -3.7295 -2.7378 40 1 3.3051 -2.5518 -4.3687 41 1 3.0858 0.9956 -1.9666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361718223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:30 Heat of formation + Delta-G solvation = 37.620899 kcal Electronic energy + Delta-G solvation = -26503.172141 eV Core-core repulsion = 22926.622221 eV Total energy + Delta-G solvation = -3576.549920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.50870 -40.27834 -39.08853 -37.55311 -36.22660 -34.96754 -33.78680 -32.23940 -31.72018 -30.52162 -30.15410 -27.37260 -25.41176 -24.67350 -23.66131 -23.19483 -22.65541 -20.95858 -19.21305 -19.16910 -17.87483 -17.29124 -17.16659 -16.96080 -16.33876 -16.10750 -15.82688 -15.55714 -15.27811 -15.04994 -14.73828 -14.49480 -14.35692 -14.15836 -14.13075 -13.85737 -13.59871 -13.55282 -13.29474 -13.08175 -12.97886 -12.82187 -12.74536 -12.52477 -12.35163 -12.15982 -12.01757 -11.90034 -11.76056 -10.82238 -10.47462 -9.91910 -9.83296 -9.69737 -9.51730 -8.82605 -8.23397 -6.37612 -0.18471 0.34981 0.57546 0.61410 1.36884 1.39095 1.50812 1.59403 1.92662 2.18008 2.38936 2.80381 2.88423 2.98274 3.08269 3.12690 3.75394 3.88806 4.04788 4.17108 4.21274 4.24519 4.25486 4.33783 4.40121 4.44835 4.56104 4.72268 4.78902 4.81755 4.92210 4.94055 5.02396 5.12287 5.23134 5.26796 5.31311 5.43854 5.46154 5.62877 5.65613 5.72834 5.84700 5.87026 6.15924 6.36296 6.42490 6.99214 7.12321 7.51288 8.20060 8.78639 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011832 B = 0.005260 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.806361 B = 5322.290968 C = 6504.503954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 H 0.101 0.899 4 C 0.508 3.492 5 O -0.573 6.573 6 N -0.436 5.436 7 C -0.357 4.357 8 H 0.064 0.936 9 C 0.026 3.974 10 N -0.880 5.880 11 Si 0.971 3.029 12 H -0.259 1.259 13 H -0.271 1.271 14 H -0.284 1.284 15 C 0.148 3.852 16 C -0.150 4.150 17 C -0.104 4.104 18 C -0.135 4.135 19 C -0.104 4.104 20 C -0.145 4.145 21 C -0.080 4.080 22 C -0.082 4.082 23 C -0.114 4.114 24 C -0.059 4.059 25 C -0.039 4.039 26 C 0.284 3.716 27 N -0.459 5.459 28 C -0.060 4.060 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.101 0.899 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 4.229 -11.692 12.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.096 4.096 3 H 0.119 0.881 4 C 0.298 3.702 5 O -0.453 6.453 6 N -0.154 5.154 7 C -0.483 4.483 8 H 0.081 0.919 9 C -0.180 4.180 10 N -0.514 5.514 11 Si 0.795 3.205 12 H -0.183 1.183 13 H -0.196 1.196 14 H -0.210 1.210 15 C 0.056 3.944 16 C -0.170 4.170 17 C -0.123 4.123 18 C -0.153 4.153 19 C -0.122 4.122 20 C -0.165 4.165 21 C -0.080 4.080 22 C -0.101 4.101 23 C -0.131 4.131 24 C -0.080 4.080 25 C -0.043 4.043 26 C -0.030 4.030 27 N -0.134 5.134 28 C -0.080 4.080 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.246 4.451 -12.567 13.519 hybrid contribution -0.307 -0.708 1.898 2.049 sum 1.939 3.743 -10.669 11.472 Atomic orbital electron populations 1.21587 0.91516 1.02743 1.01976 1.20402 0.98394 1.00189 0.90622 0.88136 1.20984 0.79976 0.85369 0.83859 1.90457 1.57524 1.24763 1.72548 1.40994 1.35178 1.15487 1.23784 1.19070 1.03083 1.35950 0.90231 0.91879 1.26415 0.94625 0.94615 1.02343 1.70006 1.07596 1.45316 1.28489 0.85246 0.79017 0.77938 0.78347 1.18304 1.19569 1.21003 1.18450 0.93491 0.86784 0.95636 1.21364 0.99923 0.92836 1.02874 1.21270 0.96338 0.96370 0.98283 1.21405 0.93506 0.99324 1.01062 1.21267 1.00719 0.91423 0.98828 1.21288 0.94687 0.98939 1.01572 1.19367 0.98928 0.94913 0.94807 1.21540 0.97642 0.93775 0.97132 1.21342 0.97483 1.01460 0.92848 1.21460 0.95242 0.91442 0.99813 1.15906 1.00853 0.94370 0.93165 1.25696 0.92403 0.92525 0.92411 1.81242 1.11298 1.09524 1.11382 1.21049 0.94854 1.00306 0.91825 0.89134 0.92419 0.94033 0.92571 0.88109 0.83587 0.82882 0.83653 0.87455 0.86320 0.82108 0.81981 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.83 71.98 0.64 -3.41 16 2 C -0.07 -2.73 2.44 -12.29 -0.03 -2.76 16 3 H 0.10 3.50 4.73 -2.38 -0.01 3.48 16 4 C 0.51 24.71 5.69 87.66 0.50 25.21 16 5 O -0.57 -32.32 15.01 -3.04 -0.05 -32.37 16 6 N -0.44 -21.84 2.38 -458.90 -1.09 -22.93 16 7 C -0.36 -19.82 8.35 84.02 0.70 -19.12 16 8 H 0.06 3.52 7.85 -2.91 -0.02 3.50 16 9 C 0.03 1.43 5.32 84.91 0.45 1.88 16 10 N -0.88 -51.13 12.89 21.65 0.28 -50.85 16 11 Si 0.97 43.69 29.57 68.60 2.03 45.72 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 C 0.15 6.19 4.40 38.22 0.17 6.36 16 16 C -0.15 -5.57 7.68 22.41 0.17 -5.40 16 17 C -0.10 -2.91 10.04 22.25 0.22 -2.69 16 18 C -0.13 -3.31 10.04 22.30 0.22 -3.09 16 19 C -0.10 -2.87 10.04 22.25 0.22 -2.65 16 20 C -0.14 -5.25 9.76 22.41 0.22 -5.03 16 21 C -0.08 -2.46 4.77 -19.90 -0.09 -2.56 16 22 C -0.08 -2.41 8.60 22.33 0.19 -2.22 16 23 C -0.11 -2.40 10.03 22.23 0.22 -2.18 16 24 C -0.06 -1.12 9.76 22.54 0.22 -0.90 16 25 C -0.04 -0.90 5.73 -21.36 -0.12 -1.02 16 26 C 0.28 6.94 15.33 88.33 1.35 8.30 16 27 N -0.46 -12.91 18.54 19.00 0.35 -12.56 16 28 C -0.06 -1.57 9.38 22.54 0.21 -1.35 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 1.98 7.14 -2.39 -0.02 1.96 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.27 14.58 8.32 -92.71 -0.77 13.81 16 33 H 0.10 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.12 4.03 6.66 -2.91 -0.02 4.01 16 39 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.14 3.34 7.94 -2.91 -0.02 3.31 16 Total: -1.00 -72.00 361.21 8.04 -63.96 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.05 Total: 21.66 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 5.47 Total: -12.63 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -0.46 Total: -86.34 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.05 Total: -32.37 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -72.00 8.04 -63.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.578 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds