Wall clock time and date at job start Tue Mar 31 2020 12:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47233 * 2 1 4 4 C 1.50702 * 109.46830 * 119.99861 * 2 1 3 5 5 O 1.21277 * 120.00359 * 119.99864 * 4 2 1 6 6 N 1.34781 * 119.99808 * 299.99755 * 4 2 1 7 7 C 1.39132 * 119.99762 * 184.44883 * 6 4 2 8 8 C 1.38645 * 120.28197 * 331.66328 * 7 6 4 9 9 C 1.38222 * 120.03106 * 180.29966 * 8 7 6 10 10 C 1.38869 * 120.61457 * 359.44915 * 9 8 7 11 11 C 1.36459 * 120.57743 * 0.55412 * 10 9 8 12 12 C 1.40741 * 119.94338 * 359.72365 * 11 10 9 13 13 C 1.41067 * 120.30157 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99933 * 151.88061 * 13 12 11 15 15 C 1.39958 * 119.99940 * 331.88394 * 13 12 11 16 16 N 1.30853 * 120.00267 * 347.86824 * 15 13 12 17 17 Si 1.86803 * 120.00050 * 167.86222 * 15 13 12 18 18 H 1.48502 * 109.47016 * 90.00125 * 17 15 13 19 19 H 1.48497 * 109.47571 * 209.99937 * 17 15 13 20 20 H 1.48504 * 109.46863 * 330.00529 * 17 15 13 21 21 C 1.50690 * 109.47030 * 239.99611 * 2 1 3 22 22 C 1.38386 * 119.92719 * 299.72148 * 21 2 1 23 23 C 1.38341 * 120.30676 * 179.76447 * 22 21 2 24 24 C 1.37972 * 120.15283 * 0.51807 * 23 22 21 25 25 C 1.39617 * 119.84122 * 359.74280 * 24 23 22 26 26 C 1.43201 * 120.14518 * 179.97438 * 25 24 23 27 27 N 5.95829 * 122.91719 * 276.20179 * 2 1 3 28 28 C 1.37928 * 119.92759 * 120.00363 * 21 2 1 29 29 H 1.09003 * 109.47190 * 300.00745 * 1 2 3 30 30 H 1.09002 * 109.47028 * 59.99987 * 1 2 3 31 31 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00301 * 4.44360 * 6 4 2 33 33 H 1.07995 * 119.98542 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.69494 * 179.70299 * 9 8 7 35 35 H 1.08004 * 119.71208 * 180.30766 * 10 9 8 36 36 H 1.08001 * 120.02984 * 179.75233 * 11 10 9 37 37 H 0.97003 * 119.99909 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.84755 * 0.02562 * 22 21 2 39 39 H 1.08005 * 119.92641 * 180.26276 * 23 22 21 40 40 H 1.07995 * 120.07688 * 179.72466 * 24 23 22 41 41 H 1.08003 * 120.06993 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.2448 -0.8490 3.5891 8 6 2.6049 -2.1877 3.5686 9 6 3.1333 -2.7794 4.7006 10 6 3.3197 -2.0420 5.8625 11 6 2.9740 -0.7228 5.9105 12 6 2.4286 -0.0977 4.7736 13 6 2.0690 1.2657 4.8146 14 1 2.0892 1.8569 3.9111 15 6 1.6860 1.8522 6.0263 16 7 1.4314 1.0995 7.0659 17 14 1.5386 3.7097 6.1595 18 1 0.1562 4.1229 5.8084 19 1 1.8434 4.1321 7.5501 20 1 2.4991 4.3506 5.2256 21 6 2.0323 -0.7104 -1.2303 22 6 1.7018 -2.0370 -1.4448 23 6 2.1546 -2.6955 -2.5741 24 6 2.9485 -2.0357 -3.4895 25 6 3.2902 -0.6988 -3.2767 26 6 4.1143 -0.0079 -4.2222 27 7 4.7679 0.5403 -4.9725 28 6 2.8252 -0.0388 -2.1373 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.0972 0.4994 2.5447 33 1 2.4685 -2.7697 2.6692 34 1 3.4075 -3.8237 4.6800 35 1 3.7384 -2.5178 6.7370 36 1 3.1191 -0.1588 6.8200 37 1 1.1656 1.5061 7.9056 38 1 1.0840 -2.5595 -0.7294 39 1 1.8894 -3.7297 -2.7375 40 1 3.3050 -2.5522 -4.3684 41 1 3.0865 0.9951 -1.9662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362194156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:22 Heat of formation + Delta-G solvation = 34.685032 kcal Electronic energy + Delta-G solvation = -25236.109924 eV Core-core repulsion = 21659.432695 eV Total energy + Delta-G solvation = -3576.677229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.39330 -39.15121 -37.32454 -36.53322 -34.24008 -33.81942 -33.64385 -31.42637 -29.96820 -29.58710 -28.23229 -25.38417 -24.79535 -23.88691 -22.53045 -21.44409 -20.70345 -19.46188 -18.26247 -17.39056 -16.77969 -16.48832 -16.25160 -15.55466 -15.21749 -14.78742 -14.51272 -14.22844 -14.11600 -13.84964 -13.58258 -13.27898 -13.18091 -12.89878 -12.74664 -12.66260 -12.37762 -12.24857 -12.01502 -11.82744 -11.69508 -11.38122 -11.32635 -11.19037 -11.07865 -10.95559 -10.53957 -10.15775 -9.76671 -9.33934 -9.29665 -9.10695 -8.93202 -8.69747 -7.41315 -7.02470 -6.71774 -4.44931 0.67244 1.15046 2.49939 2.56506 2.81148 2.82549 3.00535 3.03628 3.16738 3.38804 3.60907 3.74327 3.84207 3.97361 4.42214 4.58901 4.66845 4.85026 5.00896 5.05993 5.14711 5.25332 5.32547 5.56198 5.63736 5.66477 5.72284 5.80569 6.01145 6.09828 6.20821 6.32249 6.40549 6.49954 6.58004 6.66271 6.88111 7.01862 7.13027 7.25887 7.31709 7.60840 7.68520 7.92808 8.07094 8.08299 8.38274 8.51991 8.77101 8.78862 8.98232 10.12096 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003272 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.268137 B = 8556.190791 C = 9549.502218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 H 0.106 0.894 4 C 0.500 3.500 5 O -0.532 6.532 6 N -0.632 5.632 7 C 0.015 3.985 8 C -0.095 4.095 9 C -0.224 4.224 10 C -0.116 4.116 11 C -0.147 4.147 12 C 0.100 3.900 13 C -0.469 4.469 14 H 0.075 0.925 15 C 0.077 3.923 16 N -0.796 5.796 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.060 4.060 22 C -0.050 4.050 23 C -0.122 4.122 24 C -0.072 4.072 25 C -0.038 4.038 26 C 0.261 3.739 27 N -0.427 5.427 28 C -0.062 4.062 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.404 0.596 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.281 0.719 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -1.841 -12.626 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 H 0.124 0.876 4 C 0.286 3.714 5 O -0.409 6.409 6 N -0.274 5.274 7 C -0.079 4.079 8 C -0.115 4.115 9 C -0.244 4.244 10 C -0.135 4.135 11 C -0.167 4.167 12 C 0.096 3.904 13 C -0.499 4.499 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.422 5.422 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.060 4.060 22 C -0.068 4.068 23 C -0.140 4.140 24 C -0.092 4.092 25 C -0.042 4.042 26 C -0.054 4.054 27 N -0.103 5.103 28 C -0.083 4.083 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.239 0.761 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.113 -1.633 -13.642 14.087 hybrid contribution -0.539 1.052 0.700 1.374 sum -3.652 -0.580 -12.942 13.460 Atomic orbital electron populations 1.21826 0.91880 1.03210 1.03126 1.20335 0.97838 1.00490 0.90921 0.87600 1.20275 0.81280 0.85482 0.84317 1.90631 1.38277 1.25796 1.86244 1.42875 1.45527 1.34750 1.04199 1.17776 1.10012 0.91881 0.88204 1.20878 0.99775 0.93042 0.97846 1.20355 1.11364 0.98383 0.94288 1.20494 1.01303 0.95307 0.96379 1.20930 1.02128 0.94096 0.99575 1.17398 0.90111 0.92683 0.90160 1.19294 1.41068 0.94707 0.94842 0.90709 1.25851 0.92734 1.00304 0.95186 1.69803 1.32767 1.37279 1.02331 0.86326 0.79419 0.82449 0.78626 1.19493 1.20107 1.18574 1.19249 0.97680 0.94420 0.94670 1.21238 0.96620 0.93397 0.95582 1.21056 0.98440 1.00324 0.94228 1.21126 0.96540 0.92206 0.99359 1.15875 1.00805 0.93752 0.93748 1.25756 0.93178 0.93361 0.93118 1.81241 1.10147 1.08640 1.10234 1.21017 0.95284 0.99968 0.92000 0.91192 0.91284 0.91695 0.76064 0.86208 0.89271 0.89458 0.86060 0.90840 0.85248 0.84965 0.85268 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.90 37.16 0.33 -0.99 16 2 C -0.07 -0.86 2.91 -92.93 -0.27 -1.13 16 3 H 0.11 1.07 7.87 -51.93 -0.41 0.66 16 4 C 0.50 8.34 6.89 -10.98 -0.08 8.26 16 5 O -0.53 -10.48 12.13 5.56 0.07 -10.42 16 6 N -0.63 -11.76 4.96 -9.47 -0.05 -11.80 16 7 C 0.02 0.35 6.44 -83.17 -0.54 -0.19 16 8 C -0.10 -2.20 8.75 -39.44 -0.35 -2.55 16 9 C -0.22 -5.09 10.04 -39.35 -0.39 -5.49 16 10 C -0.12 -2.70 9.97 -39.99 -0.40 -3.09 16 11 C -0.15 -3.70 8.61 -39.28 -0.34 -4.04 16 12 C 0.10 2.49 5.57 -106.65 -0.59 1.90 16 13 C -0.47 -11.24 8.35 -37.87 -0.32 -11.55 16 14 H 0.07 1.67 7.28 -52.49 -0.38 1.29 16 15 C 0.08 1.78 5.23 -17.32 -0.09 1.69 16 16 N -0.80 -19.36 10.87 55.55 0.60 -18.75 16 17 Si 0.91 17.35 29.58 -169.99 -5.03 12.32 16 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 C -0.06 -0.67 4.40 -104.69 -0.46 -1.13 16 22 C -0.05 -0.54 7.91 -39.49 -0.31 -0.85 16 23 C -0.12 -1.11 10.03 -39.64 -0.40 -1.50 16 24 C -0.07 -0.64 9.76 -39.16 -0.38 -1.02 16 25 C -0.04 -0.40 5.73 -106.93 -0.61 -1.01 16 26 C 0.26 3.06 15.33 -22.47 -0.34 2.71 16 27 N -0.43 -5.89 18.54 41.84 0.78 -5.12 16 28 C -0.06 -0.65 9.38 -39.17 -0.37 -1.02 16 29 H 0.07 0.64 7.47 -51.93 -0.39 0.25 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.60 7.40 -51.93 -0.38 0.22 16 32 H 0.40 6.71 7.02 -40.82 -0.29 6.42 16 33 H 0.12 2.70 5.71 -52.49 -0.30 2.40 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.12 3.13 6.22 -52.49 -0.33 2.80 16 37 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 38 H 0.13 1.41 7.50 -52.49 -0.39 1.02 16 39 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 1.19 7.94 -52.48 -0.42 0.77 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -29.27 354.63 -8.72 -37.99 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.53 Total: 11.43 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -5.91 Total: -20.99 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 1.33 Total: -35.67 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.27 -8.72 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362194156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.674 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds