Wall clock time and date at job start Tue Mar 31 2020 12:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47233 * 2 1 4 4 C 1.50702 * 109.46830 * 119.99861 * 2 1 3 5 5 O 1.21277 * 120.00359 * 119.99864 * 4 2 1 6 6 N 1.34781 * 119.99808 * 299.99755 * 4 2 1 7 7 C 1.39132 * 119.99762 * 184.44883 * 6 4 2 8 8 C 1.38645 * 120.28197 * 331.66328 * 7 6 4 9 9 C 1.38222 * 120.03106 * 180.29966 * 8 7 6 10 10 C 1.38869 * 120.61457 * 359.44915 * 9 8 7 11 11 C 1.36459 * 120.57743 * 0.55412 * 10 9 8 12 12 C 1.40741 * 119.94338 * 359.72365 * 11 10 9 13 13 C 1.41067 * 120.30157 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99933 * 151.88061 * 13 12 11 15 15 C 1.39958 * 119.99940 * 331.88394 * 13 12 11 16 16 N 1.30853 * 120.00267 * 347.86824 * 15 13 12 17 17 Si 1.86803 * 120.00050 * 167.86222 * 15 13 12 18 18 H 1.48502 * 109.47016 * 90.00125 * 17 15 13 19 19 H 1.48497 * 109.47571 * 209.99937 * 17 15 13 20 20 H 1.48504 * 109.46863 * 330.00529 * 17 15 13 21 21 C 1.50690 * 109.47030 * 239.99611 * 2 1 3 22 22 C 1.38386 * 119.92719 * 299.72148 * 21 2 1 23 23 C 1.38341 * 120.30676 * 179.76447 * 22 21 2 24 24 C 1.37972 * 120.15283 * 0.51807 * 23 22 21 25 25 C 1.39617 * 119.84122 * 359.74280 * 24 23 22 26 26 C 1.43201 * 120.14518 * 179.97438 * 25 24 23 27 27 N 5.95829 * 122.91719 * 276.20179 * 2 1 3 28 28 C 1.37928 * 119.92759 * 120.00363 * 21 2 1 29 29 H 1.09003 * 109.47190 * 300.00745 * 1 2 3 30 30 H 1.09002 * 109.47028 * 59.99987 * 1 2 3 31 31 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00301 * 4.44360 * 6 4 2 33 33 H 1.07995 * 119.98542 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.69494 * 179.70299 * 9 8 7 35 35 H 1.08004 * 119.71208 * 180.30766 * 10 9 8 36 36 H 1.08001 * 120.02984 * 179.75233 * 11 10 9 37 37 H 0.97003 * 119.99909 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.84755 * 0.02562 * 22 21 2 39 39 H 1.08005 * 119.92641 * 180.26276 * 23 22 21 40 40 H 1.07995 * 120.07688 * 179.72466 * 24 23 22 41 41 H 1.08003 * 120.06993 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.2448 -0.8490 3.5891 8 6 2.6049 -2.1877 3.5686 9 6 3.1333 -2.7794 4.7006 10 6 3.3197 -2.0420 5.8625 11 6 2.9740 -0.7228 5.9105 12 6 2.4286 -0.0977 4.7736 13 6 2.0690 1.2657 4.8146 14 1 2.0892 1.8569 3.9111 15 6 1.6860 1.8522 6.0263 16 7 1.4314 1.0995 7.0659 17 14 1.5386 3.7097 6.1595 18 1 0.1562 4.1229 5.8084 19 1 1.8434 4.1321 7.5501 20 1 2.4991 4.3506 5.2256 21 6 2.0323 -0.7104 -1.2303 22 6 1.7018 -2.0370 -1.4448 23 6 2.1546 -2.6955 -2.5741 24 6 2.9485 -2.0357 -3.4895 25 6 3.2902 -0.6988 -3.2767 26 6 4.1143 -0.0079 -4.2222 27 7 4.7679 0.5403 -4.9725 28 6 2.8252 -0.0388 -2.1373 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.0972 0.4994 2.5447 33 1 2.4685 -2.7697 2.6692 34 1 3.4075 -3.8237 4.6800 35 1 3.7384 -2.5178 6.7370 36 1 3.1191 -0.1588 6.8200 37 1 1.1656 1.5061 7.9056 38 1 1.0840 -2.5595 -0.7294 39 1 1.8894 -3.7297 -2.7375 40 1 3.3050 -2.5522 -4.3684 41 1 3.0865 0.9951 -1.9662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362194156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:19 Heat of formation + Delta-G solvation = 21.098818 kcal Electronic energy + Delta-G solvation = -25236.699066 eV Core-core repulsion = 21659.432695 eV Total energy + Delta-G solvation = -3577.266371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.57016 -40.27838 -38.89772 -37.54352 -35.52122 -35.44009 -35.02098 -32.21257 -31.47816 -30.88730 -29.74296 -27.10259 -25.75911 -24.78147 -23.70879 -22.95777 -22.14939 -20.86586 -19.41573 -19.05650 -18.05521 -17.76677 -17.20415 -16.92958 -16.51885 -16.02599 -15.83142 -15.49256 -15.16069 -14.97936 -14.77927 -14.46028 -14.36516 -14.14167 -14.12412 -13.87079 -13.57519 -13.44786 -13.19194 -12.98348 -12.91539 -12.79528 -12.71282 -12.52933 -12.16568 -12.12566 -11.90211 -11.79200 -11.51117 -11.04258 -10.90668 -10.29957 -9.84498 -9.72090 -9.26385 -8.77423 -8.45623 -6.27432 -0.13959 0.38773 0.89508 1.11291 1.44516 1.53793 1.58229 1.58718 1.90042 1.95540 2.23967 2.49101 2.82155 2.86596 2.97823 3.56007 3.77491 3.86226 4.01121 4.17873 4.25735 4.32261 4.36541 4.56743 4.59079 4.69007 4.80451 4.83335 4.92012 4.98152 5.05238 5.13732 5.26938 5.30016 5.34876 5.35441 5.44600 5.51143 5.61661 5.83982 5.88497 5.91795 6.18514 6.23777 6.30516 6.42206 6.70521 6.80390 7.00671 7.07613 7.48372 8.40131 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003272 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.268137 B = 8556.190791 C = 9549.502218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 H 0.125 0.875 4 C 0.501 3.499 5 O -0.562 6.562 6 N -0.635 5.635 7 C 0.016 3.984 8 C -0.110 4.110 9 C -0.229 4.229 10 C -0.124 4.124 11 C -0.174 4.174 12 C 0.070 3.930 13 C -0.488 4.488 14 H 0.085 0.915 15 C 0.037 3.963 16 N -0.829 5.829 17 Si 0.980 3.020 18 H -0.258 1.258 19 H -0.276 1.276 20 H -0.259 1.259 21 C -0.075 4.075 22 C -0.060 4.060 23 C -0.120 4.120 24 C -0.063 4.063 25 C -0.048 4.048 26 C 0.283 3.717 27 N -0.468 5.468 28 C -0.063 4.063 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.286 0.714 38 H 0.124 0.876 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -1.289 -14.216 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 H 0.143 0.857 4 C 0.289 3.711 5 O -0.441 6.441 6 N -0.277 5.277 7 C -0.079 4.079 8 C -0.130 4.130 9 C -0.249 4.249 10 C -0.143 4.143 11 C -0.194 4.194 12 C 0.067 3.933 13 C -0.518 4.518 14 H 0.103 0.897 15 C -0.178 4.178 16 N -0.456 5.456 17 Si 0.801 3.199 18 H -0.183 1.183 19 H -0.201 1.201 20 H -0.183 1.183 21 C -0.076 4.076 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.083 4.083 25 C -0.051 4.051 26 C -0.031 4.031 27 N -0.144 5.144 28 C -0.084 4.084 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.249 0.751 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.897 -1.082 -15.257 15.784 hybrid contribution -0.298 0.749 1.152 1.406 sum -4.196 -0.333 -14.106 14.720 Atomic orbital electron populations 1.21848 0.89957 1.03500 1.04414 1.20316 0.99306 1.00582 0.88160 0.85721 1.21195 0.80085 0.84919 0.84880 1.90601 1.39472 1.27309 1.86729 1.42925 1.45859 1.35076 1.03865 1.17921 1.08899 0.91909 0.89125 1.21080 1.00369 0.93370 0.98185 1.20661 1.10800 0.99482 0.93945 1.20709 1.01246 0.94890 0.97434 1.20956 1.03841 0.95022 0.99551 1.17747 0.90977 0.93696 0.90924 1.19559 1.41656 0.94747 0.95858 0.89676 1.26688 0.91869 1.04754 0.94478 1.69881 1.33398 1.39302 1.02985 0.85229 0.79775 0.76533 0.78368 1.18274 1.20119 1.18326 1.19253 0.98698 0.94824 0.94791 1.21374 0.96830 0.93491 0.96213 1.21324 0.97745 1.01396 0.93354 1.21417 0.95450 0.91579 0.99858 1.15951 1.01185 0.94381 0.93609 1.25892 0.92366 0.92439 0.92444 1.81265 1.11622 1.09897 1.11618 1.21131 0.94779 1.00618 0.91829 0.91093 0.88770 0.91972 0.75054 0.85823 0.87044 0.87517 0.87634 0.90362 0.85811 0.82512 0.82924 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.90 71.98 0.64 -1.64 16 2 C -0.06 -1.33 2.91 -12.29 -0.04 -1.37 16 3 H 0.12 2.20 7.87 -2.39 -0.02 2.18 16 4 C 0.50 16.27 6.89 87.66 0.60 16.87 16 5 O -0.56 -21.91 12.13 -3.02 -0.04 -21.94 16 6 N -0.63 -23.39 4.96 -302.28 -1.50 -24.89 16 7 C 0.02 0.76 6.44 38.87 0.25 1.01 16 8 C -0.11 -5.10 8.75 22.36 0.20 -4.90 16 9 C -0.23 -10.42 10.04 22.42 0.22 -10.19 16 10 C -0.12 -5.85 9.97 22.01 0.22 -5.63 16 11 C -0.17 -8.98 8.61 22.47 0.19 -8.78 16 12 C 0.07 3.57 5.57 -21.18 -0.12 3.46 16 13 C -0.49 -23.59 8.35 23.38 0.20 -23.40 16 14 H 0.09 3.78 7.28 -2.91 -0.02 3.76 16 15 C 0.04 1.70 5.23 85.26 0.45 2.15 16 16 N -0.83 -41.05 10.87 21.83 0.24 -40.82 16 17 Si 0.98 35.16 29.58 68.60 2.03 37.19 16 18 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 19 H -0.28 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 21 C -0.08 -1.54 4.40 -19.91 -0.09 -1.63 16 22 C -0.06 -1.19 7.91 22.33 0.18 -1.02 16 23 C -0.12 -1.86 10.03 22.23 0.22 -1.64 16 24 C -0.06 -0.95 9.76 22.54 0.22 -0.73 16 25 C -0.05 -0.88 5.73 -21.36 -0.12 -1.01 16 26 C 0.28 6.20 15.33 88.33 1.35 7.55 16 27 N -0.47 -12.48 18.54 19.00 0.35 -12.12 16 28 C -0.06 -1.19 9.38 22.54 0.21 -0.98 16 29 H 0.07 1.15 7.47 -2.39 -0.02 1.13 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.05 7.40 -2.39 -0.02 1.03 16 32 H 0.41 13.46 7.02 -92.71 -0.65 12.81 16 33 H 0.12 5.59 5.71 -2.91 -0.02 5.57 16 34 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.11 5.68 6.22 -2.91 -0.02 5.67 16 37 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 38 H 0.12 2.56 7.50 -2.91 -0.02 2.54 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 41 H 0.14 2.27 7.94 -2.91 -0.02 2.25 16 Total: -1.00 -64.19 354.63 6.31 -57.88 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.43 Total: 36.57 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 4.79 Total: -31.86 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -0.91 Total: -77.83 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.04 Total: -21.94 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Total: -64.19 6.31 -57.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362194156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.984 kcal (2) G-P(sol) polarization free energy of solvation -64.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds