Wall clock time and date at job start Tue Mar 31 2020 13:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48502 * 109.47267 * 270.00229 * 3 2 1 5 5 H 1.48496 * 109.47373 * 30.00232 * 3 2 1 6 6 H 1.48500 * 109.47123 * 150.00344 * 3 2 1 7 7 C 1.38799 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00475 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99867 * 359.71826 * 7 2 1 10 10 C 1.81006 * 100.00065 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46918 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46734 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46978 * 179.97438 * 12 11 10 14 14 C 1.47155 * 110.99621 * 62.63136 * 13 12 11 15 15 C 1.52895 * 108.51421 * 52.12636 * 14 13 12 16 16 C 1.50724 * 109.96043 * 50.32872 * 15 14 13 17 17 C 1.38684 * 118.48226 * 163.27092 * 16 15 14 18 18 C 1.38035 * 120.34372 * 179.82151 * 17 16 15 19 19 C 1.38259 * 119.83179 * 0.02562 * 18 17 16 20 20 C 1.38012 * 119.86695 * 0.05048 * 19 18 17 21 21 C 1.37825 * 121.66539 * 343.22332 * 16 15 14 22 22 C 1.46634 * 110.99730 * 185.60809 * 13 12 11 23 23 H 1.08999 * 109.29580 * 168.83366 * 22 13 12 24 24 C 1.50699 * 109.30478 * 49.45306 * 22 13 12 25 25 N 1.34781 * 119.99773 * 117.44718 * 24 22 13 26 26 O 1.21279 * 119.99886 * 297.44714 * 24 22 13 27 27 H 0.97001 * 120.00155 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46976 * 300.00101 * 10 9 7 29 29 H 1.08993 * 109.47056 * 60.00137 * 10 9 7 30 30 H 1.09002 * 109.46713 * 300.00058 * 11 10 9 31 31 H 1.08994 * 109.46997 * 59.99711 * 11 10 9 32 32 H 1.08993 * 109.47343 * 300.00113 * 12 11 10 33 33 H 1.09008 * 109.47358 * 60.00021 * 12 11 10 34 34 H 1.09006 * 109.63003 * 171.83474 * 14 13 12 35 35 H 1.08999 * 109.63593 * 292.41580 * 14 13 12 36 36 H 1.09003 * 109.39162 * 170.47644 * 15 14 13 37 37 H 1.08998 * 109.38831 * 290.17707 * 15 14 13 38 38 H 1.07996 * 119.82761 * 359.83760 * 17 16 15 39 39 H 1.08007 * 120.08255 * 179.97438 * 18 17 16 40 40 H 1.07995 * 120.06509 * 180.02562 * 19 18 17 41 41 H 1.07999 * 119.81043 * 180.02562 * 20 19 18 42 42 H 0.96997 * 119.99879 * 5.00903 * 25 24 22 43 43 H 0.96999 * 119.99947 * 185.00128 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 0.0063 10 6 2.5159 -3.8914 0.0035 11 6 1.9794 -5.3243 0.0082 12 6 3.1514 -6.3077 0.0052 13 7 2.6363 -7.6835 0.0102 14 6 1.8547 -7.9583 -1.2059 15 6 2.6992 -7.5775 -2.4222 16 6 4.0649 -8.2066 -2.3177 17 6 4.8486 -8.2796 -3.4596 18 6 6.1069 -8.8447 -3.4069 19 6 6.5883 -9.3409 -2.2096 20 6 5.8086 -9.2700 -1.0730 21 6 4.5435 -8.7030 -1.1244 22 6 3.7285 -8.6530 0.1413 23 1 3.3118 -9.6402 0.3410 24 6 4.6169 -8.2503 1.2901 25 7 4.7483 -9.0629 2.3574 26 8 5.2136 -7.1951 1.2542 27 1 -0.4850 0.8400 0.0004 28 1 3.1211 -3.7333 -0.8892 29 1 3.1279 -3.7294 0.8907 30 1 1.3739 -5.4826 0.9006 31 1 1.3675 -5.4860 -0.8793 32 1 3.7565 -6.1492 -0.8874 33 1 3.7637 -6.1461 0.8925 34 1 1.6067 -9.0189 -1.2499 35 1 0.9400 -7.3657 -1.1952 36 1 2.2072 -7.9293 -3.3290 37 1 2.8026 -6.4933 -2.4658 38 1 4.4724 -7.8922 -4.3949 39 1 6.7134 -8.8998 -4.2989 40 1 7.5724 -9.7834 -2.1640 41 1 6.1858 -9.6576 -0.1382 42 1 4.3299 -9.9380 2.3550 43 1 5.2613 -8.7727 3.1277 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369900181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:55 Heat of formation + Delta-G solvation = -9.758810 kcal Electronic energy + Delta-G solvation = -24691.146548 eV Core-core repulsion = 21247.986041 eV Total energy + Delta-G solvation = -3443.160507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36514 -39.00759 -37.49402 -34.07416 -33.29925 -32.83153 -32.35912 -30.85473 -29.51122 -26.75185 -25.49780 -24.80734 -23.33066 -22.78521 -21.19403 -20.69142 -19.27894 -17.65694 -17.39440 -17.13180 -16.92238 -16.06541 -15.74640 -15.26946 -14.74410 -14.66486 -14.52596 -14.11790 -14.01092 -13.92805 -13.53806 -13.43022 -12.86025 -12.77708 -12.59495 -12.25436 -11.89872 -11.63292 -11.51497 -11.39003 -11.22731 -11.01874 -10.92119 -10.71864 -10.57053 -10.33202 -9.98712 -9.60540 -9.37981 -8.99141 -8.97562 -8.78522 -8.43277 -8.21618 -6.44507 -6.16256 -3.85345 1.09557 1.17576 2.30675 3.18484 3.26474 3.27875 3.34045 3.58097 3.62681 4.01479 4.29792 4.39229 4.50550 4.66414 4.68645 4.81830 4.87574 4.99117 5.11722 5.19713 5.29944 5.30146 5.37738 5.47133 5.55690 5.63654 5.75632 5.77415 5.83552 5.92073 5.98160 6.07855 6.17986 6.28740 6.34460 6.37647 6.44903 6.59844 6.70976 6.77461 6.83233 6.93110 7.03440 7.08941 7.67908 8.04532 8.44207 9.30296 10.92005 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003042 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.695756 B = 9203.632432 C = 9551.187375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.072 0.928 9 S -0.134 6.134 10 C -0.109 4.109 11 C -0.091 4.091 12 C 0.032 3.968 13 N -0.510 5.510 14 C 0.052 3.948 15 C -0.125 4.125 16 C -0.060 4.060 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.107 4.107 21 C -0.103 4.103 22 C 0.107 3.893 23 H 0.106 0.894 24 C 0.529 3.471 25 N -0.852 5.852 26 O -0.520 6.520 27 H 0.266 0.734 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.401 0.599 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -25.476 -2.409 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.662 4.662 8 H 0.090 0.910 9 S 0.094 5.906 10 C -0.258 4.258 11 C -0.130 4.130 12 C -0.096 4.096 13 N -0.232 5.232 14 C -0.076 4.076 15 C -0.164 4.164 16 C -0.061 4.061 17 C -0.136 4.136 18 C -0.133 4.133 19 C -0.142 4.142 20 C -0.125 4.125 21 C -0.105 4.105 22 C -0.005 4.005 23 H 0.124 0.876 24 C 0.313 3.687 25 N -0.416 5.416 26 O -0.394 6.394 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.230 0.770 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.867 -24.860 -2.160 26.164 hybrid contribution 2.551 1.017 -0.444 2.782 sum 10.418 -23.843 -2.604 26.150 Atomic orbital electron populations 1.70025 1.05888 1.27193 1.47569 1.24999 0.95067 0.99015 0.94708 0.86182 0.79507 0.81624 0.78325 1.20319 1.20787 1.19678 1.22710 0.94559 0.90846 1.58093 0.91008 1.84532 1.09782 0.99408 1.96842 1.23201 1.02596 0.97229 1.02824 1.21276 0.96873 0.92200 1.02673 1.22833 0.97475 0.85423 1.03854 1.62740 1.19554 1.03387 1.37561 1.22309 0.97013 1.01953 0.86292 1.21211 0.92506 1.02022 1.00622 1.19548 0.96535 0.97452 0.92517 1.21119 0.94562 0.99939 0.98017 1.21115 0.95840 0.98387 0.97934 1.21025 0.99679 1.00644 0.92863 1.20999 0.93692 0.99415 0.98416 1.19822 0.95546 1.00464 0.94656 1.20586 0.90904 0.98612 0.90430 0.87629 1.20221 0.81320 0.83924 0.83243 1.43860 1.57423 1.20738 1.19586 1.90733 1.45721 1.23069 1.79884 0.92405 0.92464 0.92121 0.91062 0.91940 0.93863 0.87727 0.90482 0.88533 0.89826 0.89103 0.85820 0.85977 0.86078 0.86598 0.77035 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.61 13.22 55.49 0.73 -25.88 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -15.32 9.50 30.94 0.29 -15.02 16 8 H 0.07 2.10 7.80 -52.49 -0.41 1.69 16 9 S -0.13 -3.64 21.44 -107.50 -2.30 -5.94 16 10 C -0.11 -2.40 5.67 37.16 0.21 -2.19 16 11 C -0.09 -1.62 5.00 -26.73 -0.13 -1.76 16 12 C 0.03 0.51 3.53 -3.82 -0.01 0.50 16 13 N -0.51 -6.42 4.91 -229.54 -1.13 -7.55 16 14 C 0.05 0.56 5.50 -3.74 -0.02 0.54 16 15 C -0.13 -1.38 5.15 -27.93 -0.14 -1.52 16 16 C -0.06 -0.70 5.07 -104.60 -0.53 -1.23 16 17 C -0.12 -1.27 9.66 -39.49 -0.38 -1.65 16 18 C -0.11 -1.13 10.05 -39.65 -0.40 -1.53 16 19 C -0.12 -1.22 10.05 -39.66 -0.40 -1.62 16 20 C -0.11 -1.14 9.08 -39.48 -0.36 -1.50 16 21 C -0.10 -1.19 4.90 -104.63 -0.51 -1.70 16 22 C 0.11 1.16 2.72 -70.20 -0.19 0.97 16 23 H 0.11 0.83 7.90 -51.93 -0.41 0.42 16 24 C 0.53 6.18 5.39 -10.98 -0.06 6.13 16 25 N -0.85 -6.05 8.87 31.22 0.28 -5.78 16 26 O -0.52 -8.44 14.54 5.56 0.08 -8.36 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.06 6.50 -51.93 -0.34 0.72 16 32 H 0.04 0.73 5.45 -51.93 -0.28 0.45 16 33 H 0.10 1.89 4.99 -51.92 -0.26 1.63 16 34 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16 35 H 0.10 1.07 6.79 -51.93 -0.35 0.71 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.18 6.61 -51.93 -0.34 0.83 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.07 7.33 -52.49 -0.38 0.68 16 42 H 0.40 1.52 8.66 -40.82 -0.35 1.17 16 43 H 0.40 2.55 8.93 -40.82 -0.36 2.18 16 LS Contribution 354.68 15.07 5.35 5.35 Total: -1.00 -35.68 354.68 -10.76 -46.44 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.01 Total: 4.14 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.73 Total: -19.62 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.12 Total: -39.21 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -2.30 Total: -5.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.68 -10.76 -46.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369900181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.684 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds