Wall clock time and date at job start Tue Mar 31 2020 13:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48502 * 109.47267 * 270.00229 * 3 2 1 5 5 H 1.48496 * 109.47373 * 30.00232 * 3 2 1 6 6 H 1.48500 * 109.47123 * 150.00344 * 3 2 1 7 7 C 1.38799 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00475 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99867 * 359.71826 * 7 2 1 10 10 C 1.81006 * 100.00065 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46918 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46734 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46978 * 179.97438 * 12 11 10 14 14 C 1.47155 * 110.99621 * 62.63136 * 13 12 11 15 15 C 1.52895 * 108.51421 * 52.12636 * 14 13 12 16 16 C 1.50724 * 109.96043 * 50.32872 * 15 14 13 17 17 C 1.38684 * 118.48226 * 163.27092 * 16 15 14 18 18 C 1.38035 * 120.34372 * 179.82151 * 17 16 15 19 19 C 1.38259 * 119.83179 * 0.02562 * 18 17 16 20 20 C 1.38012 * 119.86695 * 0.05048 * 19 18 17 21 21 C 1.37825 * 121.66539 * 343.22332 * 16 15 14 22 22 C 1.46634 * 110.99730 * 185.60809 * 13 12 11 23 23 H 1.08999 * 109.29580 * 168.83366 * 22 13 12 24 24 C 1.50699 * 109.30478 * 49.45306 * 22 13 12 25 25 N 1.34781 * 119.99773 * 117.44718 * 24 22 13 26 26 O 1.21279 * 119.99886 * 297.44714 * 24 22 13 27 27 H 0.97001 * 120.00155 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46976 * 300.00101 * 10 9 7 29 29 H 1.08993 * 109.47056 * 60.00137 * 10 9 7 30 30 H 1.09002 * 109.46713 * 300.00058 * 11 10 9 31 31 H 1.08994 * 109.46997 * 59.99711 * 11 10 9 32 32 H 1.08993 * 109.47343 * 300.00113 * 12 11 10 33 33 H 1.09008 * 109.47358 * 60.00021 * 12 11 10 34 34 H 1.09006 * 109.63003 * 171.83474 * 14 13 12 35 35 H 1.08999 * 109.63593 * 292.41580 * 14 13 12 36 36 H 1.09003 * 109.39162 * 170.47644 * 15 14 13 37 37 H 1.08998 * 109.38831 * 290.17707 * 15 14 13 38 38 H 1.07996 * 119.82761 * 359.83760 * 17 16 15 39 39 H 1.08007 * 120.08255 * 179.97438 * 18 17 16 40 40 H 1.07995 * 120.06509 * 180.02562 * 19 18 17 41 41 H 1.07999 * 119.81043 * 180.02562 * 20 19 18 42 42 H 0.96997 * 119.99879 * 5.00903 * 25 24 22 43 43 H 0.96999 * 119.99947 * 185.00128 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 0.0063 10 6 2.5159 -3.8914 0.0035 11 6 1.9794 -5.3243 0.0082 12 6 3.1514 -6.3077 0.0052 13 7 2.6363 -7.6835 0.0102 14 6 1.8547 -7.9583 -1.2059 15 6 2.6992 -7.5775 -2.4222 16 6 4.0649 -8.2066 -2.3177 17 6 4.8486 -8.2796 -3.4596 18 6 6.1069 -8.8447 -3.4069 19 6 6.5883 -9.3409 -2.2096 20 6 5.8086 -9.2700 -1.0730 21 6 4.5435 -8.7030 -1.1244 22 6 3.7285 -8.6530 0.1413 23 1 3.3118 -9.6402 0.3410 24 6 4.6169 -8.2503 1.2901 25 7 4.7483 -9.0629 2.3574 26 8 5.2136 -7.1951 1.2542 27 1 -0.4850 0.8400 0.0004 28 1 3.1211 -3.7333 -0.8892 29 1 3.1279 -3.7294 0.8907 30 1 1.3739 -5.4826 0.9006 31 1 1.3675 -5.4860 -0.8793 32 1 3.7565 -6.1492 -0.8874 33 1 3.7637 -6.1461 0.8925 34 1 1.6067 -9.0189 -1.2499 35 1 0.9400 -7.3657 -1.1952 36 1 2.2072 -7.9293 -3.3290 37 1 2.8026 -6.4933 -2.4658 38 1 4.4724 -7.8922 -4.3949 39 1 6.7134 -8.8998 -4.2989 40 1 7.5724 -9.7834 -2.1640 41 1 6.1858 -9.6576 -0.1382 42 1 4.3299 -9.9380 2.3550 43 1 5.2613 -8.7727 3.1277 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369900181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:54 Heat of formation + Delta-G solvation = -35.568594 kcal Electronic energy + Delta-G solvation = -24692.265744 eV Core-core repulsion = 21247.986041 eV Total energy + Delta-G solvation = -3444.279703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25051 -39.86940 -38.43987 -35.05616 -34.64911 -34.47863 -33.63517 -31.83284 -30.31604 -28.16951 -27.54380 -25.79515 -24.43303 -23.58850 -22.37533 -21.63783 -20.22415 -19.56901 -18.42883 -18.00015 -17.82337 -16.99239 -16.91316 -16.67900 -16.39876 -15.88169 -15.64255 -15.27462 -15.23290 -15.06132 -14.72381 -14.43721 -14.23665 -13.75548 -13.66684 -13.42098 -13.21947 -13.11356 -12.93298 -12.86598 -12.59920 -12.38941 -12.34203 -12.17378 -11.85770 -11.62643 -11.39988 -11.16050 -10.88629 -10.49337 -10.34685 -9.75904 -9.58959 -9.44016 -8.67838 -8.38996 -6.15085 0.31449 0.39203 1.29122 1.37526 1.40874 1.46900 1.72703 2.26255 2.43113 2.81708 2.94726 2.95806 3.31100 3.58129 3.69816 3.89961 3.97947 3.98181 4.07408 4.12082 4.21478 4.26248 4.29175 4.39210 4.46668 4.56482 4.63221 4.67888 4.71595 4.81949 4.93554 5.01760 5.04336 5.13580 5.19147 5.32649 5.37743 5.42544 5.53142 5.58230 5.87923 5.89169 5.93654 6.02792 6.16495 6.42270 7.02976 7.30587 8.70529 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003042 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.695756 B = 9203.632432 C = 9551.187375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.018 3.982 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.067 0.933 9 S -0.182 6.182 10 C -0.086 4.086 11 C -0.077 4.077 12 C 0.053 3.947 13 N -0.511 5.511 14 C 0.051 3.949 15 C -0.122 4.122 16 C -0.080 4.080 17 C -0.131 4.131 18 C -0.120 4.120 19 C -0.130 4.130 20 C -0.117 4.117 21 C -0.117 4.117 22 C 0.107 3.893 23 H 0.142 0.858 24 C 0.525 3.475 25 N -0.828 5.828 26 O -0.573 6.573 27 H 0.273 0.727 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.420 0.580 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 -26.952 -2.619 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.691 4.691 8 H 0.085 0.915 9 S 0.047 5.953 10 C -0.235 4.235 11 C -0.116 4.116 12 C -0.077 4.077 13 N -0.233 5.233 14 C -0.077 4.077 15 C -0.160 4.160 16 C -0.080 4.080 17 C -0.149 4.149 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.005 4.005 23 H 0.159 0.841 24 C 0.309 3.691 25 N -0.393 5.393 26 O -0.452 6.452 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.252 0.748 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.711 -26.406 -2.348 27.905 hybrid contribution 2.315 1.340 -0.370 2.701 sum 11.027 -25.066 -2.719 27.519 Atomic orbital electron populations 1.70137 1.07549 1.28619 1.47805 1.26036 0.96072 1.02953 0.93636 0.85036 0.78114 0.76435 0.78943 1.19086 1.19471 1.19130 1.23037 0.94608 0.92320 1.59164 0.91518 1.84440 1.13271 1.00603 1.96987 1.23110 1.00213 0.98205 1.02019 1.21151 0.97615 0.90016 1.02850 1.22422 0.95743 0.87202 1.02297 1.62679 1.20187 1.01819 1.38655 1.22415 0.96313 1.03551 0.85374 1.21158 0.92800 1.00364 1.01648 1.19713 0.97005 0.98180 0.93112 1.21372 0.95068 1.00136 0.98320 1.21443 0.95744 0.97707 0.98911 1.21370 1.00546 1.00232 0.92617 1.21215 0.93544 0.99520 0.99284 1.19967 0.96197 1.00986 0.94747 1.20743 0.90355 0.99362 0.90041 0.84102 1.20450 0.80919 0.83530 0.84163 1.43680 1.56299 1.20891 1.18392 1.90715 1.47991 1.25444 1.81037 0.91825 0.92871 0.93140 0.91421 0.91060 0.95222 0.89618 0.87722 0.89023 0.87943 0.91719 0.84754 0.83785 0.83882 0.85498 0.74808 0.75881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.84 13.22 21.65 0.29 -55.56 16 2 C 0.02 1.07 5.49 84.86 0.47 1.54 16 3 Si 0.99 45.62 29.55 68.60 2.03 47.65 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -33.11 9.50 67.95 0.65 -32.46 16 8 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 9 S -0.18 -10.17 21.44 -56.49 -1.21 -11.39 16 10 C -0.09 -3.90 5.67 71.98 0.41 -3.49 16 11 C -0.08 -2.80 5.00 30.59 0.15 -2.65 16 12 C 0.05 1.69 3.53 86.30 0.30 2.00 16 13 N -0.51 -12.35 4.91 -880.14 -4.32 -16.67 16 14 C 0.05 1.02 5.50 86.22 0.47 1.49 16 15 C -0.12 -2.59 5.15 29.82 0.15 -2.44 16 16 C -0.08 -1.79 5.07 -19.85 -0.10 -1.90 16 17 C -0.13 -2.67 9.66 22.33 0.22 -2.45 16 18 C -0.12 -2.16 10.05 22.23 0.22 -1.94 16 19 C -0.13 -2.33 10.05 22.22 0.22 -2.10 16 20 C -0.12 -2.32 9.08 22.34 0.20 -2.12 16 21 C -0.12 -2.56 4.90 -19.87 -0.10 -2.66 16 22 C 0.11 2.13 2.72 43.45 0.12 2.25 16 23 H 0.14 1.76 7.90 -2.39 -0.02 1.74 16 24 C 0.53 11.72 5.39 87.66 0.47 12.19 16 25 N -0.83 -10.13 8.87 -173.53 -1.54 -11.67 16 26 O -0.57 -18.81 14.54 -3.03 -0.04 -18.86 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.05 2.36 8.14 -2.40 -0.02 2.34 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.45 6.50 -2.39 -0.02 2.43 16 32 H 0.03 1.03 5.45 -2.39 -0.01 1.02 16 33 H 0.09 3.18 4.99 -2.38 -0.01 3.17 16 34 H 0.10 1.55 8.05 -2.38 -0.02 1.53 16 35 H 0.09 1.93 6.79 -2.39 -0.02 1.91 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.71 6.61 -2.39 -0.02 1.70 16 38 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.13 2.11 7.33 -2.91 -0.02 2.09 16 42 H 0.42 1.96 8.66 -92.71 -0.80 1.16 16 43 H 0.41 4.49 8.93 -92.71 -0.83 3.66 16 Total: -1.00 -79.00 354.68 -1.52 -80.52 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -0.58 Total: 20.72 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.86 Total: -34.74 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -5.57 Total: -83.90 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.04 Total: -18.86 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: -10.17 SS G_CDS: -1.21 Total: -11.39 kcal Total: -79.00 -1.52 -80.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369900181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.954 kcal (2) G-P(sol) polarization free energy of solvation -79.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds