Wall clock time and date at job start Tue Mar 31 2020 12:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46848 * 2 1 4 4 N 1.46503 * 109.46701 * 119.99472 * 2 1 3 5 5 C 1.34775 * 120.00005 * 274.99933 * 4 2 1 6 6 O 1.21692 * 120.00246 * 0.02562 * 5 4 2 7 7 C 1.46380 * 120.00069 * 180.02562 * 5 4 2 8 8 H 1.08001 * 119.99539 * 0.02562 * 7 5 4 9 9 C 1.40046 * 120.00096 * 180.02562 * 7 5 4 10 10 N 1.30668 * 119.99692 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99775 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47371 * 90.00149 * 11 9 7 13 13 H 1.48506 * 109.47006 * 209.99779 * 11 9 7 14 14 H 1.48502 * 109.47306 * 329.99875 * 11 9 7 15 15 C 1.50699 * 109.47269 * 239.99508 * 2 1 3 16 16 C 1.38319 * 119.87827 * 99.99970 * 15 2 1 17 17 C 1.38014 * 120.12369 * 180.02562 * 16 15 2 18 18 C 1.39336 * 119.87588 * 0.02562 * 17 16 15 19 19 C 1.48404 * 120.11883 * 179.97438 * 18 17 16 20 20 C 1.39456 * 120.04995 * 359.97438 * 19 18 17 21 21 C 1.38124 * 120.18405 * 180.02562 * 20 19 18 22 22 C 1.38048 * 120.27973 * 0.23893 * 21 20 19 23 23 C 1.39677 * 120.09393 * 359.48661 * 22 21 20 24 24 C 1.43192 * 120.09606 * 180.25683 * 23 22 21 25 25 N 9.76531 * 104.75175 * 219.16927 * 2 1 3 26 26 C 1.39057 * 120.04493 * 180.02562 * 19 18 17 27 27 C 1.39333 * 119.75903 * 0.24766 * 18 17 16 28 28 C 1.38024 * 119.87557 * 359.49483 * 27 18 17 29 29 H 1.08995 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47583 * 300.00226 * 1 2 3 31 31 H 1.08998 * 109.47060 * 60.00790 * 1 2 3 32 32 H 0.97002 * 119.99681 * 95.00510 * 4 2 1 33 33 H 0.97008 * 119.99360 * 179.97438 * 10 9 7 34 34 H 1.08008 * 119.93812 * 0.02562 * 16 15 2 35 35 H 1.07998 * 120.06614 * 180.02562 * 17 16 15 36 36 H 1.07993 * 119.90708 * 0.02562 * 20 19 18 37 37 H 1.08002 * 119.85573 * 179.97438 * 21 20 19 38 38 H 1.08003 * 119.95151 * 179.74197 * 22 21 20 39 39 H 1.07999 * 120.13775 * 359.94810 * 26 19 18 40 40 H 1.07999 * 120.05896 * 179.75175 * 27 18 17 41 41 H 1.08003 * 119.93339 * 180.25611 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8571 1.1626 2.4119 7 6 2.6353 -0.7079 3.5523 8 1 2.8929 -1.7556 3.5037 9 6 2.7685 -0.0093 4.7588 10 7 2.4573 1.2585 4.8174 11 14 3.3924 -0.8895 6.2837 12 1 4.8723 -0.7831 6.3461 13 1 2.7998 -0.2642 7.4934 14 1 3.0011 -2.3207 6.2241 15 6 2.0324 -0.7105 -1.2304 16 6 2.4584 0.0222 -2.3235 17 6 2.9190 -0.6233 -3.4531 18 6 2.9538 -2.0157 -3.4913 19 6 3.4474 -2.7153 -4.7034 20 6 3.8773 -1.9801 -5.8077 21 6 4.3368 -2.6285 -6.9374 22 6 4.3693 -4.0078 -6.9837 23 6 3.9469 -4.7556 -5.8822 24 6 3.9857 -6.1863 -5.9281 25 7 4.0166 -7.3213 -5.9646 26 6 3.4810 -4.1050 -4.7400 27 6 2.5180 -2.7488 -2.3894 28 6 2.0644 -2.0929 -1.2629 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 2.2490 -1.6317 1.1528 33 1 2.5492 1.7422 5.6532 34 1 2.4306 1.1015 -2.2930 35 1 3.2518 -0.0503 -4.3059 36 1 3.8509 -0.9009 -5.7794 37 1 4.6681 -2.0538 -7.7898 38 1 4.7257 -4.5093 -7.8713 39 1 3.1490 -4.6781 -3.8869 40 1 2.5391 -3.8283 -2.4153 41 1 1.7303 -2.6602 -0.4068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370382362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:49 Heat of formation + Delta-G solvation = 14.074022 kcal Electronic energy + Delta-G solvation = -24237.714432 eV Core-core repulsion = 20660.143443 eV Total energy + Delta-G solvation = -3577.570989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.09201 -40.09534 -39.02325 -37.54695 -36.13033 -34.56842 -33.37466 -32.62852 -31.65823 -31.41568 -29.22497 -28.17680 -25.37073 -25.06911 -23.54701 -23.02008 -21.87561 -20.96781 -19.71939 -19.32943 -17.73653 -17.46650 -17.01517 -16.59414 -16.33050 -16.03801 -15.56912 -15.22604 -15.13416 -15.00267 -14.92921 -14.59161 -14.45202 -14.22151 -14.05505 -13.93540 -13.82250 -13.62644 -13.33820 -13.11443 -12.88497 -12.74229 -12.64545 -12.60367 -12.40856 -12.18257 -12.02333 -11.73920 -11.60261 -10.92825 -10.58486 -9.93218 -9.85684 -9.81877 -9.47621 -8.92133 -8.27811 -6.84275 -0.36616 -0.04163 0.52489 0.88014 1.40227 1.41491 1.56489 1.57864 1.95467 2.24964 2.48846 2.73014 2.82044 3.09547 3.20840 3.55616 3.64978 3.79978 3.82312 4.00069 4.11137 4.22490 4.25650 4.34308 4.43957 4.49514 4.55638 4.69751 4.75153 4.81509 4.91124 4.99592 5.06405 5.18349 5.22805 5.29126 5.32659 5.34169 5.41510 5.53822 5.70321 5.73789 5.87911 5.90102 6.06108 6.24598 6.32478 6.41154 6.88097 7.56148 8.51232 8.68995 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.002366 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.687916 B =11831.371479 C =12780.593989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.187 3.813 3 H 0.052 0.948 4 N -0.749 5.749 5 C 0.541 3.459 6 O -0.629 6.629 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.821 5.821 11 Si 0.996 3.004 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.250 1.250 15 C -0.086 4.086 16 C -0.119 4.119 17 C -0.099 4.099 18 C -0.057 4.057 19 C -0.050 4.050 20 C -0.078 4.078 21 C -0.110 4.110 22 C -0.065 4.065 23 C -0.041 4.041 24 C 0.279 3.721 25 N -0.468 5.468 26 C -0.069 4.069 27 C -0.109 4.109 28 C -0.118 4.118 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.077 0.923 32 H 0.392 0.608 33 H 0.274 0.726 34 H 0.130 0.870 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.168 0.832 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 -7.727 -24.584 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.081 3.919 3 H 0.070 0.930 4 N -0.403 5.403 5 C 0.346 3.654 6 O -0.516 6.516 7 C -0.611 4.611 8 H 0.103 0.897 9 C -0.186 4.186 10 N -0.450 5.450 11 Si 0.815 3.185 12 H -0.187 1.187 13 H -0.198 1.198 14 H -0.173 1.173 15 C -0.086 4.086 16 C -0.137 4.137 17 C -0.117 4.117 18 C -0.057 4.057 19 C -0.051 4.051 20 C -0.097 4.097 21 C -0.127 4.127 22 C -0.085 4.085 23 C -0.044 4.044 24 C -0.036 4.036 25 N -0.144 5.144 26 C -0.089 4.089 27 C -0.126 4.126 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.226 0.774 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.185 0.815 38 H 0.170 0.830 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.129 -8.480 -24.520 26.133 hybrid contribution 0.052 -0.084 1.260 1.264 sum 3.182 -8.565 -23.260 24.990 Atomic orbital electron populations 1.22045 0.94988 1.02007 1.01132 1.19464 0.93864 0.95382 0.83168 0.92970 1.45978 1.72116 1.13265 1.08967 1.18539 0.77522 0.86041 0.83348 1.90548 1.56913 1.18453 1.85694 1.21421 1.47296 0.98205 0.94162 0.89712 1.26935 0.92843 0.95157 1.03650 1.70185 1.36597 1.10478 1.27758 0.85052 0.78856 0.79192 0.75392 1.18680 1.19786 1.17332 1.20065 0.99156 0.94567 0.94853 1.21133 0.98997 1.00538 0.93052 1.21412 0.98546 0.93438 0.98270 1.18832 1.00182 0.93329 0.93397 1.18637 1.00384 0.92246 0.93784 1.21838 0.94401 1.01767 0.91650 1.21390 0.98780 0.93519 0.99024 1.21536 0.95663 0.94579 0.96752 1.15940 1.07767 0.83214 0.97492 1.25996 0.92286 0.92892 0.92408 1.81296 1.10555 1.13478 1.09044 1.21327 0.96663 0.94007 0.96913 1.21378 0.98246 1.00706 0.92289 1.20969 1.00343 0.93463 0.98834 0.91777 0.95336 0.90382 0.77360 0.91618 0.85200 0.82447 0.82862 0.81471 0.82978 0.84535 0.83919 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.46 71.98 0.68 -4.37 16 2 C 0.19 7.15 2.77 44.24 0.12 7.27 16 3 H 0.05 2.32 7.43 -2.39 -0.02 2.30 16 4 N -0.75 -33.56 5.02 -450.38 -2.26 -35.82 16 5 C 0.54 31.36 7.71 86.36 0.67 32.03 16 6 O -0.63 -41.95 14.68 -4.32 -0.06 -42.01 16 7 C -0.57 -32.65 9.54 24.83 0.24 -32.41 16 8 H 0.08 4.34 7.85 -2.91 -0.02 4.31 16 9 C 0.03 1.64 5.50 85.30 0.47 2.11 16 10 N -0.82 -50.37 11.83 21.83 0.26 -50.11 16 11 Si 1.00 41.14 29.56 68.60 2.03 43.17 16 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 13 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 14 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 15 C -0.09 -2.51 4.96 -19.83 -0.10 -2.60 16 16 C -0.12 -2.87 9.65 22.24 0.21 -2.65 16 17 C -0.10 -1.79 9.43 22.48 0.21 -1.57 16 18 C -0.06 -1.03 5.88 -20.04 -0.12 -1.15 16 19 C -0.05 -0.69 5.87 -20.08 -0.12 -0.80 16 20 C -0.08 -0.68 9.42 22.54 0.21 -0.46 16 21 C -0.11 -0.61 10.02 22.20 0.22 -0.39 16 22 C -0.06 -0.51 9.75 22.57 0.22 -0.29 16 23 C -0.04 -0.52 5.73 -21.39 -0.12 -0.64 16 24 C 0.28 4.92 15.32 88.33 1.35 6.27 16 25 N -0.47 -10.89 18.54 19.00 0.35 -10.54 16 26 C -0.07 -0.93 9.13 22.76 0.21 -0.72 16 27 C -0.11 -2.20 9.43 22.48 0.21 -1.99 16 28 C -0.12 -3.00 9.04 22.24 0.20 -2.80 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.39 15.35 6.84 -92.71 -0.63 14.71 16 33 H 0.27 15.22 8.29 -92.70 -0.77 14.45 16 34 H 0.13 2.95 8.03 -2.91 -0.02 2.92 16 35 H 0.16 1.70 6.20 -2.91 -0.02 1.68 16 36 H 0.15 0.72 6.19 -2.91 -0.02 0.70 16 37 H 0.17 -0.08 8.06 -2.91 -0.02 -0.10 16 38 H 0.15 0.57 8.06 -2.91 -0.02 0.54 16 39 H 0.14 1.73 6.20 -2.91 -0.02 1.72 16 40 H 0.14 2.24 6.20 -2.91 -0.02 2.22 16 41 H 0.12 3.11 6.91 -2.91 -0.02 3.09 16 Total: -1.00 -80.77 360.23 5.55 -75.23 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.46 Total: 25.27 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.77 Total: -5.19 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -1.65 Total: -96.47 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.06 Total: -42.01 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -80.77 5.55 -75.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370382362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.300 kcal (2) G-P(sol) polarization free energy of solvation -80.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds