Wall clock time and date at job start Tue Mar 31 2020 12:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46600 * 2 1 4 4 N 1.46503 * 109.47008 * 240.00733 * 2 1 3 5 5 C 1.34778 * 119.99958 * 84.99664 * 4 2 1 6 6 O 1.21691 * 120.00217 * 0.02562 * 5 4 2 7 7 C 1.46375 * 119.99906 * 180.02562 * 5 4 2 8 8 H 1.07995 * 120.00110 * 359.97438 * 7 5 4 9 9 C 1.40054 * 119.99779 * 180.02562 * 7 5 4 10 10 N 1.30670 * 119.99956 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99697 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47320 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.46852 * 119.99591 * 11 9 7 14 14 H 1.48500 * 109.47292 * 239.99367 * 11 9 7 15 15 C 1.50698 * 109.47475 * 120.00631 * 2 1 3 16 16 C 1.38319 * 119.87860 * 260.00005 * 15 2 1 17 17 C 1.38014 * 120.12369 * 179.97438 * 16 15 2 18 18 C 1.39336 * 119.87588 * 0.02562 * 17 16 15 19 19 C 1.48404 * 120.11883 * 179.97438 * 18 17 16 20 20 C 1.39456 * 120.04995 * 359.97438 * 19 18 17 21 21 C 1.38124 * 120.18405 * 180.02562 * 20 19 18 22 22 C 1.38048 * 120.27973 * 0.23893 * 21 20 19 23 23 C 1.39677 * 120.09393 * 359.48661 * 22 21 20 24 24 C 1.43192 * 120.09606 * 180.25683 * 23 22 21 25 25 N 9.76530 * 104.78480 * 140.84199 * 2 1 3 26 26 C 1.39057 * 120.04493 * 180.02562 * 19 18 17 27 27 C 1.39333 * 119.75903 * 0.24766 * 18 17 16 28 28 C 1.38024 * 119.87557 * 359.49483 * 27 18 17 29 29 H 1.09000 * 109.47663 * 59.99663 * 1 2 3 30 30 H 1.09007 * 109.46661 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47161 * 299.99120 * 1 2 3 32 32 H 0.96996 * 119.99771 * 264.99539 * 4 2 1 33 33 H 0.97001 * 119.99460 * 180.02562 * 10 9 7 34 34 H 1.08008 * 119.93812 * 359.95641 * 16 15 2 35 35 H 1.07998 * 120.06614 * 180.02562 * 17 16 15 36 36 H 1.07993 * 119.90708 * 0.02562 * 20 19 18 37 37 H 1.08002 * 119.85573 * 179.97438 * 21 20 19 38 38 H 1.08003 * 119.95151 * 179.74197 * 22 21 20 39 39 H 1.07999 * 120.13775 * 359.94810 * 26 19 18 40 40 H 1.07999 * 120.05896 * 179.75175 * 27 18 17 41 41 H 1.08003 * 119.93339 * 180.25611 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0180 -2.3572 6 8 1.8579 1.1629 -2.4116 7 6 2.6343 -0.7080 -3.5526 8 1 2.8912 -1.7558 -3.5042 9 6 2.7685 -0.0090 -4.7588 10 7 2.4581 1.2589 -4.8171 11 14 3.3911 -0.8895 -6.2841 12 1 3.6712 -2.3103 -5.9559 13 1 2.3599 -0.8213 -7.3505 14 1 4.6376 -0.2364 -6.7585 15 6 2.0324 -0.7105 1.2303 16 6 2.4585 0.0221 2.3235 17 6 2.9191 -0.6234 3.4530 18 6 2.9549 -2.0158 3.4908 19 6 3.4497 -2.7154 4.7024 20 6 3.8806 -1.9802 5.8063 21 6 4.3421 -2.6285 6.9352 22 6 4.3848 -4.0077 6.9773 23 6 3.9507 -4.7557 5.8805 24 6 3.9899 -6.1864 5.9263 25 7 4.0220 -7.3214 5.9622 26 6 3.4852 -4.1051 4.7382 27 6 2.5298 -2.7487 2.3847 28 6 2.0661 -2.0929 1.2622 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2490 -1.6316 -1.1528 33 1 2.5507 1.7429 -5.6527 34 1 2.4310 1.1014 2.2929 35 1 3.2511 -0.0504 4.3062 36 1 3.8534 -0.9010 5.7784 37 1 4.6750 -2.0539 7.7870 38 1 4.7506 -4.5091 7.8612 39 1 3.1524 -4.6781 3.8854 40 1 2.5593 -3.8281 2.4071 41 1 1.7325 -2.6602 0.4058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370382363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:02 Heat of formation + Delta-G solvation = 34.569590 kcal Electronic energy + Delta-G solvation = -24237.341811 eV Core-core repulsion = 20660.659576 eV Total energy + Delta-G solvation = -3576.682235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.33208 -39.09898 -37.36991 -36.70685 -34.63569 -32.64433 -32.14780 -32.00525 -30.83089 -29.94026 -28.23013 -26.12751 -24.68078 -24.12788 -22.63857 -21.91881 -20.77796 -19.34292 -18.93932 -17.60438 -16.92396 -16.11224 -15.90562 -15.42622 -15.20995 -14.79372 -14.45349 -14.36281 -14.19479 -13.93151 -13.69023 -13.53734 -13.22252 -13.16016 -13.08126 -13.03308 -12.48420 -12.35994 -12.15102 -11.97808 -11.63784 -11.58712 -11.30306 -11.08211 -10.97843 -10.77592 -10.51632 -10.38380 -10.19332 -9.83456 -9.40864 -8.93990 -8.88113 -8.15046 -7.62973 -7.56540 -6.20648 -4.66030 0.25342 0.57658 1.42423 1.61736 2.30298 2.63493 3.11810 3.20348 3.24542 3.43856 3.46630 3.91107 4.09596 4.24574 4.37240 4.54308 4.57001 4.72195 4.78505 4.86947 4.93624 4.96398 5.04869 5.25646 5.39547 5.51242 5.51440 5.69861 5.73597 5.81399 5.86862 5.92039 6.01572 6.02319 6.07743 6.17275 6.30918 6.41791 6.47302 6.51442 6.73542 6.82818 6.97996 7.11363 7.41845 7.89513 8.06799 8.30905 9.00970 9.49877 10.57676 10.76171 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002367 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.506671 B =11828.623355 C =12778.273758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.185 3.815 3 H 0.085 0.915 4 N -0.761 5.761 5 C 0.556 3.444 6 O -0.580 6.580 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.907 3.093 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.061 4.061 16 C -0.111 4.111 17 C -0.103 4.103 18 C -0.069 4.069 19 C -0.029 4.029 20 C -0.085 4.085 21 C -0.115 4.115 22 C -0.077 4.077 23 C -0.026 4.026 24 C 0.255 3.745 25 N -0.418 5.418 26 C -0.067 4.067 27 C -0.103 4.103 28 C -0.110 4.110 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.379 0.621 33 H 0.268 0.732 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.123 0.877 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -6.416 22.239 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.079 3.921 3 H 0.103 0.897 4 N -0.416 5.416 5 C 0.360 3.640 6 O -0.462 6.462 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.396 5.396 11 Si 0.731 3.269 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.062 4.062 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.069 4.069 19 C -0.029 4.029 20 C -0.104 4.104 21 C -0.133 4.133 22 C -0.098 4.098 23 C -0.029 4.029 24 C -0.060 4.060 25 N -0.093 5.093 26 C -0.088 4.088 27 C -0.121 4.121 28 C -0.128 4.128 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.212 0.788 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.857 -7.127 22.124 23.318 hybrid contribution 0.418 -0.487 -0.775 1.007 sum 2.275 -7.615 21.349 22.780 Atomic orbital electron populations 1.22155 0.95780 1.01356 1.01813 1.19459 0.93168 0.96839 0.82651 0.89684 1.46306 1.73266 1.12840 1.09235 1.18219 0.77781 0.86402 0.81578 1.90596 1.54813 1.16373 1.84457 1.20909 1.46778 0.97154 0.93306 0.91453 1.25702 0.93329 0.94467 0.99713 1.70027 1.35236 1.08169 1.26173 0.86336 0.78807 0.80319 0.81412 1.18791 1.20170 1.20171 1.20429 0.96018 0.93944 0.95766 1.21012 0.98934 1.00223 0.92812 1.21114 0.99580 0.93147 0.98216 1.18569 1.02126 0.93179 0.93020 1.18705 0.98339 0.92167 0.93703 1.21530 0.95986 1.00726 0.92162 1.21036 0.99944 0.93781 0.98546 1.21199 0.97516 0.94098 0.96982 1.15883 1.06081 0.84286 0.96654 1.25720 0.93771 0.92667 0.93852 1.81275 1.08545 1.12032 1.07407 1.21288 0.96936 0.93903 0.96633 1.21156 0.98652 0.99562 0.92754 1.20964 0.99657 0.94144 0.98023 0.91394 0.93191 0.93116 0.78821 0.92172 0.85514 0.85772 0.84763 0.84693 0.85037 0.84602 0.85895 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.46 37.16 0.35 -2.22 16 2 C 0.19 3.37 2.77 -69.08 -0.19 3.18 16 3 H 0.09 1.75 7.43 -51.93 -0.39 1.36 16 4 N -0.76 -16.32 5.02 -56.34 -0.28 -16.60 16 5 C 0.56 15.35 7.71 -12.99 -0.10 15.25 16 6 O -0.58 -18.19 14.68 5.20 0.08 -18.11 16 7 C -0.54 -15.10 9.54 -35.63 -0.34 -15.44 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 10 N -0.77 -22.70 11.83 55.55 0.66 -22.04 16 11 Si 0.91 19.94 29.56 -169.99 -5.02 14.91 16 12 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 C -0.06 -0.88 4.96 -104.56 -0.52 -1.40 16 16 C -0.11 -1.39 9.65 -39.63 -0.38 -1.77 16 17 C -0.10 -1.06 9.43 -39.26 -0.37 -1.43 16 18 C -0.07 -0.71 5.88 -104.89 -0.62 -1.32 16 19 C -0.03 -0.24 5.87 -104.95 -0.62 -0.86 16 20 C -0.09 -0.56 9.42 -39.17 -0.37 -0.93 16 21 C -0.12 -0.60 10.02 -39.69 -0.40 -1.00 16 22 C -0.08 -0.45 9.75 -39.11 -0.38 -0.84 16 23 C -0.03 -0.20 5.73 -106.98 -0.61 -0.81 16 24 C 0.26 2.43 15.32 -22.47 -0.34 2.09 16 25 N -0.42 -4.98 18.54 41.84 0.78 -4.20 16 26 C -0.07 -0.54 9.13 -38.82 -0.35 -0.89 16 27 C -0.10 -1.13 9.43 -39.25 -0.37 -1.50 16 28 C -0.11 -1.42 9.04 -39.63 -0.36 -1.78 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.38 7.21 6.84 -40.82 -0.28 6.93 16 33 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 34 H 0.13 1.44 8.03 -52.48 -0.42 1.02 16 35 H 0.12 0.93 6.20 -52.49 -0.33 0.60 16 36 H 0.13 0.67 6.19 -52.49 -0.32 0.34 16 37 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 39 H 0.14 0.98 6.20 -52.49 -0.33 0.66 16 40 H 0.12 1.07 6.20 -52.49 -0.33 0.75 16 41 H 0.13 1.59 6.90 -52.48 -0.36 1.23 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -34.80 360.23 -8.85 -43.65 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.41 Total: 6.33 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -6.07 Total: -9.36 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 1.15 Total: -42.85 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.08 Total: -18.11 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.80 -8.85 -43.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370382363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.217 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds