Wall clock time and date at job start Tue Mar 31 2020 13:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99997 * 2 1 4 4 H 1.48494 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46992 * 300.00063 * 3 2 1 6 6 H 1.48498 * 109.47002 * 60.00322 * 3 2 1 7 7 C 1.38795 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00101 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00263 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00261 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47081 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47123 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47194 * 185.32466 * 12 11 10 14 14 C 1.45754 * 110.99934 * 293.10516 * 13 12 11 15 15 C 1.52931 * 110.11672 * 268.81381 * 14 13 12 16 16 N 1.46888 * 108.28491 * 297.84185 * 15 14 13 17 17 C 1.46950 * 110.81363 * 180.66745 * 16 15 14 18 18 C 1.53108 * 108.43379 * 178.34852 * 17 16 15 19 19 O 1.42291 * 109.35733 * 58.17662 * 18 17 16 20 20 C 1.35662 * 119.65152 * 329.42926 * 19 18 17 21 21 C 1.39090 * 118.06940 * 181.46078 * 20 19 18 22 22 C 1.37985 * 120.20261 * 179.79035 * 21 20 19 23 23 C 1.37894 * 120.08127 * 359.95102 * 22 21 20 24 24 C 1.39393 * 111.00381 * 163.73758 * 13 12 11 25 25 C 1.39124 * 123.31507 * 121.73544 * 24 13 12 26 26 H 0.96998 * 120.00285 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47203 * 60.00097 * 10 9 7 28 28 H 1.08998 * 109.47200 * 299.99349 * 10 9 7 29 29 H 1.08992 * 109.47552 * 59.99705 * 11 10 9 30 30 H 1.09001 * 109.47353 * 299.99469 * 11 10 9 31 31 H 1.09000 * 109.47038 * 65.32363 * 12 11 10 32 32 H 1.09004 * 109.46695 * 305.32186 * 12 11 10 33 33 H 1.09001 * 109.36419 * 29.00485 * 14 13 12 34 34 H 1.09000 * 109.36549 * 148.61608 * 14 13 12 35 35 H 1.09000 * 109.70404 * 178.14636 * 15 14 13 36 36 H 1.08994 * 109.70054 * 57.53667 * 15 14 13 37 37 H 1.09003 * 109.64242 * 58.66387 * 17 16 15 38 38 H 1.09006 * 109.81886 * 298.12929 * 17 16 15 39 39 H 1.09006 * 109.49138 * 298.21333 * 18 17 16 40 40 H 1.09005 * 109.49377 * 178.14137 * 18 17 16 41 41 H 1.08001 * 119.89914 * 359.80779 * 21 20 19 42 42 H 1.08001 * 119.96284 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.74700 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9792 -5.3242 -0.0012 12 6 3.1513 -6.3077 -0.0005 13 7 2.6401 -7.6788 -0.1297 14 6 1.8832 -8.0677 1.0537 15 6 2.8064 -8.7394 2.0712 16 7 3.3536 -9.9590 1.4623 17 6 4.2399 -10.6595 2.4022 18 6 4.7450 -11.9387 1.7294 19 8 5.4228 -11.6018 0.5245 20 6 5.0416 -10.5041 -0.1756 21 6 5.7061 -10.2229 -1.3647 22 6 5.3513 -9.1200 -2.1141 23 6 4.3346 -8.2921 -1.6870 24 6 3.6570 -8.5587 -0.4970 25 6 4.0169 -9.6692 0.2597 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7313 0.8894 28 1 3.1243 -3.7314 -0.8906 29 1 1.3709 -5.4840 -0.8913 30 1 1.3704 -5.4846 0.8886 31 1 3.7048 -6.2128 0.9337 32 1 3.8121 -6.0859 -0.8386 33 1 1.4343 -7.1818 1.5028 34 1 1.0952 -8.7636 0.7661 35 1 2.2406 -8.9977 2.9664 36 1 3.6197 -8.0624 2.3325 37 1 3.6869 -10.9147 3.3063 38 1 5.0858 -10.0214 2.6579 39 1 3.8996 -12.5881 1.5018 40 1 5.4311 -12.4559 2.4002 41 1 6.5021 -10.8700 -1.7026 42 1 5.8702 -8.9051 -3.0366 43 1 4.0611 -7.4306 -2.2780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378406148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:26 Heat of formation + Delta-G solvation = -17.601304 kcal Electronic energy + Delta-G solvation = -24323.630082 eV Core-core repulsion = 20880.129499 eV Total energy + Delta-G solvation = -3443.500583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51491 -40.08265 -38.04847 -37.01731 -34.62124 -34.14625 -32.36605 -31.43262 -29.67584 -28.14058 -27.68443 -26.02033 -25.35475 -24.54492 -22.72427 -21.21336 -20.62888 -19.59614 -19.11172 -18.24408 -17.89264 -17.20008 -16.89825 -16.63157 -16.34423 -16.01630 -15.73111 -15.56544 -15.36495 -15.09296 -14.92436 -14.54919 -14.34589 -13.93196 -13.64316 -13.43120 -13.24527 -13.16188 -12.95108 -12.80640 -12.72971 -12.60259 -12.42216 -12.22101 -11.96111 -11.88996 -11.60995 -11.39866 -11.15324 -11.00421 -10.35911 -10.25354 -8.78640 -8.66287 -8.55856 -8.37644 -6.13440 0.32174 0.40325 1.31562 1.38168 1.49210 1.72596 2.11610 2.27459 2.50767 2.55343 2.87658 2.96830 3.31741 3.52268 3.64558 3.78367 3.86823 3.90640 4.04607 4.07659 4.12431 4.18675 4.24102 4.30485 4.36991 4.39685 4.46399 4.53546 4.56255 4.65339 4.72081 4.75847 4.81866 4.89987 5.05261 5.07522 5.15314 5.25913 5.40282 5.50588 5.57656 5.68862 5.85349 6.03175 6.18372 6.21916 6.54195 7.05039 8.71923 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.002463 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.797713 B =11367.079625 C =11879.601953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.193 6.193 10 C -0.088 4.088 11 C -0.082 4.082 12 C 0.077 3.923 13 N -0.502 5.502 14 C 0.051 3.949 15 C 0.027 3.973 16 N -0.487 5.487 17 C 0.012 3.988 18 C 0.061 3.939 19 O -0.330 6.330 20 C 0.108 3.892 21 C -0.165 4.165 22 C -0.080 4.080 23 C -0.166 4.166 24 C 0.112 3.888 25 C -0.026 4.026 26 H 0.271 0.729 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.038 0.962 37 H 0.129 0.871 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.157 0.843 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 -24.175 3.876 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.036 5.964 10 C -0.237 4.237 11 C -0.121 4.121 12 C -0.049 4.049 13 N -0.216 5.216 14 C -0.076 4.076 15 C -0.101 4.101 16 N -0.205 5.205 17 C -0.114 4.114 18 C -0.014 4.014 19 O -0.244 6.244 20 C 0.060 3.940 21 C -0.185 4.185 22 C -0.099 4.099 23 C -0.187 4.187 24 C 0.011 3.989 25 C -0.126 4.126 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.057 0.943 37 H 0.147 0.853 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.156 0.844 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.450 -24.673 3.489 26.650 hybrid contribution 2.113 1.824 0.814 2.908 sum 11.563 -22.848 4.303 25.967 Atomic orbital electron populations 1.70155 1.07656 1.28477 1.48097 1.26056 0.96027 1.03091 0.93824 0.84978 0.78451 0.76742 0.78281 1.18665 1.19728 1.19678 1.23065 0.94722 0.92008 1.58662 0.90946 1.84638 1.13760 1.01023 1.97021 1.23122 1.00286 0.97260 1.03050 1.21210 0.97462 0.90173 1.03207 1.22224 0.96284 0.84778 1.01657 1.57606 1.24596 1.02414 1.36934 1.22260 0.96133 1.01383 0.87784 1.22621 0.98880 0.89742 0.98825 1.59661 1.33725 1.23877 1.03198 1.22903 0.96111 0.95936 0.96476 1.23221 0.98464 0.95915 0.83766 1.85606 1.59499 1.41573 1.37725 1.18734 0.93950 0.87737 0.93535 1.20627 1.03439 1.00701 0.93705 1.20925 0.96115 0.92915 0.99955 1.21055 0.99002 1.02816 0.95811 1.18427 0.92207 0.92724 0.95512 1.18868 0.98542 0.99646 0.95578 0.91972 0.91888 0.91802 0.91208 0.91093 0.93795 0.89599 0.88058 0.89522 0.86207 0.94348 0.85338 0.93338 0.90422 0.84371 0.83652 0.82553 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.58 13.22 21.65 0.29 -54.29 16 2 C 0.01 0.85 5.49 84.86 0.47 1.31 16 3 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -30.80 9.50 67.95 0.65 -30.16 16 8 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 9 S -0.19 -10.15 21.44 -56.49 -1.21 -11.36 16 10 C -0.09 -3.43 5.67 71.98 0.41 -3.02 16 11 C -0.08 -2.54 5.11 30.60 0.16 -2.38 16 12 C 0.08 2.01 4.79 86.31 0.41 2.42 16 13 N -0.50 -12.85 4.41 -697.74 -3.08 -15.92 16 14 C 0.05 1.13 5.90 86.50 0.51 1.64 16 15 C 0.03 0.50 5.58 86.28 0.48 0.99 16 16 N -0.49 -10.11 4.73 -693.92 -3.28 -13.39 16 17 C 0.01 0.17 5.60 86.33 0.48 0.65 16 18 C 0.06 0.84 7.39 72.02 0.53 1.37 16 19 O -0.33 -7.00 10.21 -89.78 -0.92 -7.92 16 20 C 0.11 2.58 6.51 22.70 0.15 2.73 16 21 C -0.16 -3.47 9.92 22.41 0.22 -3.25 16 22 C -0.08 -1.59 10.02 22.13 0.22 -1.37 16 23 C -0.17 -3.93 8.86 22.49 0.20 -3.73 16 24 C 0.11 2.90 5.48 38.46 0.21 3.11 16 25 C -0.03 -0.65 5.86 38.21 0.22 -0.42 16 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 28 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 2.15 6.47 -2.39 -0.02 2.14 16 31 H 0.04 1.12 7.81 -2.39 -0.02 1.10 16 32 H 0.09 2.21 6.36 -2.38 -0.02 2.19 16 33 H 0.10 2.13 5.89 -2.39 -0.01 2.11 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 0.79 7.84 -2.39 -0.02 0.77 16 37 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.14 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.13 3.00 7.17 -2.91 -0.02 2.98 16 Total: -1.00 -70.68 353.61 0.15 -70.52 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.00 Total: 16.69 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 5.32 Total: -30.11 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -6.07 Total: -83.60 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.92 Total: -7.92 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -10.15 SS G_CDS: -1.21 Total: -11.36 kcal Total: -70.68 0.15 -70.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378406148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.923 kcal (2) G-P(sol) polarization free energy of solvation -70.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds