Wall clock time and date at job start Tue Mar 31 2020 13:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00181 * 2 1 4 4 C 1.52991 * 109.47243 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47526 * 65.00163 * 4 3 2 6 6 C 1.36939 * 120.00150 * 264.53429 * 5 4 3 7 7 H 1.07999 * 120.00384 * 146.14414 * 6 5 4 8 8 C 1.38810 * 119.99862 * 326.14742 * 6 5 4 9 9 N 1.31629 * 120.00066 * 337.55833 * 8 6 5 10 10 Si 1.86800 * 120.00463 * 157.55645 * 8 6 5 11 11 H 1.48501 * 109.46712 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47412 * 119.99502 * 10 8 6 13 13 H 1.48498 * 109.47401 * 240.00398 * 10 8 6 14 14 C 1.46504 * 120.00132 * 84.53246 * 5 4 3 15 15 C 1.50692 * 109.46952 * 90.00397 * 14 5 4 16 16 C 1.38332 * 119.86943 * 105.00277 * 15 14 5 17 17 C 1.37952 * 120.17699 * 180.29177 * 16 15 14 18 18 C 1.39595 * 119.90231 * 359.47695 * 17 16 15 19 19 C 1.47829 * 120.13213 * 180.22562 * 18 17 16 20 20 N 1.31220 * 125.72273 * 179.97438 * 19 18 17 21 21 C 1.34160 * 108.64710 * 179.83994 * 20 19 18 22 22 C 1.34552 * 107.83754 * 0.41640 * 21 20 19 23 23 O 1.34418 * 125.72735 * 0.29330 * 19 18 17 24 24 C 1.39524 * 119.73499 * 0.52001 * 18 17 16 25 25 C 1.38211 * 119.82654 * 359.73055 * 24 18 17 26 26 F 1.35101 * 119.95439 * 180.02562 * 25 24 18 27 27 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47025 * 299.99945 * 1 2 3 29 29 H 1.09000 * 109.46908 * 60.00322 * 1 2 3 30 30 H 1.08997 * 109.47192 * 59.99849 * 3 2 1 31 31 H 1.09007 * 109.47315 * 300.00145 * 3 2 1 32 32 H 1.08998 * 109.47351 * 304.99976 * 4 3 2 33 33 H 1.09007 * 109.47337 * 185.00110 * 4 3 2 34 34 H 0.96996 * 119.99950 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.46968 * 330.00126 * 14 5 4 36 36 H 1.09001 * 109.46964 * 210.00545 * 14 5 4 37 37 H 1.08005 * 119.91376 * 0.02562 * 16 15 14 38 38 H 1.07995 * 120.05320 * 179.72277 * 17 16 15 39 39 H 1.07992 * 126.08650 * 180.14714 * 21 20 19 40 40 H 1.07999 * 126.36888 * 179.77991 * 22 21 20 41 41 H 1.07995 * 120.08661 * 179.71033 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2047 -0.7847 -1.3051 7 1 3.9927 -1.3337 -2.2107 8 6 4.7092 -1.4467 -0.1942 9 7 5.3714 -0.7779 0.7260 10 14 4.4483 -3.2867 -0.0050 11 1 3.6792 -3.7996 -1.1672 12 1 5.7655 -3.9697 0.0565 13 1 3.6933 -3.5536 1.2455 14 6 4.1711 1.3875 -2.4488 15 6 5.5929 1.8852 -2.4893 16 6 6.4960 1.3192 -3.3711 17 6 7.8007 1.7658 -3.4093 18 6 8.2076 2.7991 -2.5634 19 6 9.6032 3.2850 -2.6036 20 7 10.1017 4.2456 -1.8616 21 6 11.3964 4.4027 -2.1761 22 6 11.6954 3.5182 -3.1449 23 8 10.5729 2.8211 -3.4106 24 6 7.2935 3.3672 -1.6756 25 6 5.9904 2.9077 -1.6429 26 9 5.1030 3.4562 -0.7846 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8464 -0.8900 32 1 3.8515 0.5682 0.8409 33 1 3.9786 2.1765 0.0889 34 1 5.7242 -1.2405 1.5020 35 1 3.4892 2.2374 -2.4203 36 1 3.9698 0.7899 -3.3379 37 1 6.1801 0.5226 -4.0284 38 1 8.5053 1.3195 -4.0953 39 1 12.0765 5.1155 -1.7337 40 1 12.6563 3.3904 -3.6210 41 1 7.6034 4.1637 -1.0153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411823508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:44 Heat of formation + Delta-G solvation = -7.818077 kcal Electronic energy + Delta-G solvation = -26896.474564 eV Core-core repulsion = 22887.185038 eV Total energy + Delta-G solvation = -4009.289526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.34898 -43.19779 -38.63015 -37.18718 -35.42909 -34.70703 -32.56435 -31.13676 -30.16686 -29.58633 -28.27880 -25.85116 -25.66452 -23.46084 -23.05853 -22.44046 -21.64996 -20.97735 -19.88195 -18.09375 -16.83414 -16.54136 -16.41239 -15.98016 -15.71069 -15.42260 -15.14592 -14.98378 -14.80105 -14.55043 -14.01956 -13.96886 -13.44122 -13.34739 -13.22150 -12.99607 -12.77641 -12.11873 -12.02326 -11.72982 -11.31583 -11.27026 -11.19601 -10.88938 -10.82516 -10.63052 -10.57802 -10.39534 -10.12645 -10.01704 -9.69128 -9.34673 -8.83830 -8.46983 -8.38625 -7.86796 -6.67518 -5.80096 -3.26965 0.83210 1.68492 1.94460 2.69262 2.87060 3.41107 3.49253 3.51705 4.01729 4.08632 4.52419 4.67919 4.79489 4.96533 4.97996 5.22220 5.33482 5.36512 5.43496 5.56788 5.67452 5.72339 5.77010 5.80161 5.86527 6.06329 6.09328 6.14481 6.18253 6.25502 6.28723 6.44356 6.47460 6.52467 6.66265 6.76408 6.89613 6.97441 7.32240 7.70212 7.75492 7.80454 8.05543 8.49298 9.13995 9.77937 10.31147 11.21403 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003740 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.558704 B = 7484.808809 C = 8367.050890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.047 3.953 4 C 0.125 3.875 5 N -0.559 5.559 6 C -0.239 4.239 7 H 0.064 0.936 8 C 0.017 3.983 9 N -0.882 5.882 10 Si 0.902 3.098 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.287 1.287 14 C 0.170 3.830 15 C -0.080 4.080 16 C -0.089 4.089 17 C -0.094 4.094 18 C -0.031 4.031 19 C 0.257 3.743 20 N -0.484 5.484 21 C -0.038 4.038 22 C -0.088 4.088 23 O -0.198 6.198 24 C -0.103 4.103 25 C 0.104 3.896 26 F -0.132 7.132 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.255 0.745 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.183 0.817 40 H 0.215 0.785 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 8.385 -7.298 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C -0.031 4.031 4 C -0.001 4.001 5 N -0.276 5.276 6 C -0.368 4.368 7 H 0.081 0.919 8 C -0.184 4.184 9 N -0.523 5.523 10 Si 0.731 3.269 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.043 3.957 15 C -0.086 4.086 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.033 4.033 19 C 0.054 3.946 20 N -0.213 5.213 21 C -0.178 4.178 22 C -0.158 4.158 23 O -0.084 6.084 24 C -0.123 4.123 25 C 0.083 3.917 26 F -0.111 7.111 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.200 0.800 40 H 0.231 0.769 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.159 8.452 -6.664 11.539 hybrid contribution 0.372 -0.917 0.061 0.991 sum 4.530 7.535 -6.603 10.996 Atomic orbital electron populations 1.22630 0.84228 1.01448 0.98456 1.88198 1.16607 1.27944 1.94853 1.23386 0.98752 0.83987 0.97020 1.21446 0.87507 0.98711 0.92387 1.44042 1.73377 1.03812 1.06359 1.19058 1.35916 0.82078 0.99790 0.91852 1.25063 0.96450 0.97977 0.98923 1.69993 1.34734 1.35515 1.12091 0.86254 0.77190 0.85392 0.78020 1.20083 1.22064 1.21399 1.20179 0.87993 0.94474 0.93039 1.21474 1.02263 0.91732 0.93164 1.20732 0.91884 0.99417 0.98820 1.21115 0.96608 0.95407 0.98209 1.16712 0.85226 1.00002 1.01399 1.23915 0.90693 0.91690 0.88309 1.70684 1.09057 1.16667 1.24877 1.23355 0.93046 1.02313 0.99096 1.25046 0.90644 0.97075 1.03085 1.84509 1.18634 1.52735 1.52567 1.20833 0.91106 1.01285 0.99126 1.17145 0.86741 0.95725 0.92041 1.91377 1.67278 1.84373 1.68046 0.90753 0.95510 0.95273 0.95477 0.95398 0.87573 0.92027 0.93529 0.93105 0.91916 0.84817 0.85545 0.79955 0.76900 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.80 10.44 -35.23 -0.37 -8.17 16 3 C 0.05 0.96 6.28 37.15 0.23 1.20 16 4 C 0.13 2.92 5.62 -4.05 -0.02 2.90 16 5 N -0.56 -13.27 2.39 -174.62 -0.42 -13.69 16 6 C -0.24 -6.27 9.27 -15.06 -0.14 -6.41 16 7 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 8 C 0.02 0.45 4.91 -17.43 -0.09 0.36 16 9 N -0.88 -25.12 11.35 55.49 0.63 -24.49 16 10 Si 0.90 21.86 29.61 -169.99 -5.03 16.83 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 C 0.17 3.36 5.53 -5.20 -0.03 3.33 16 15 C -0.08 -1.54 5.47 -104.47 -0.57 -2.11 16 16 C -0.09 -1.52 9.65 -39.65 -0.38 -1.91 16 17 C -0.09 -1.50 9.71 -39.18 -0.38 -1.88 16 18 C -0.03 -0.53 5.87 -104.99 -0.62 -1.15 16 19 C 0.26 4.19 7.90 -13.89 -0.11 4.08 16 20 N -0.48 -7.79 10.91 -11.73 -0.13 -7.92 16 21 C -0.04 -0.46 11.87 -17.84 -0.21 -0.68 16 22 C -0.09 -0.95 12.17 29.43 0.36 -0.59 16 23 O -0.20 -2.83 10.52 4.07 0.04 -2.79 16 24 C -0.10 -1.86 9.67 -39.11 -0.38 -2.24 16 25 C 0.10 2.00 7.24 -39.47 -0.29 1.71 16 26 F -0.13 -2.60 13.76 2.25 0.03 -2.57 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.11 2.87 5.35 -51.93 -0.28 2.60 16 33 H 0.06 1.39 4.90 -51.93 -0.25 1.13 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.05 0.94 7.99 -51.93 -0.41 0.52 16 36 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 37 H 0.13 2.04 7.99 -52.48 -0.42 1.62 16 38 H 0.13 1.73 7.90 -52.49 -0.41 1.32 16 39 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.14 2.39 7.83 -52.49 -0.41 1.98 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -31.60 355.33 -6.51 -38.11 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.11 Total: 1.10 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.08 Total: -46.09 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.32 Total: -10.96 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.03 Total: -2.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.60 -6.51 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411823508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.293 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds