Wall clock time and date at job start Tue Mar 31 2020 13:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00181 * 2 1 4 4 C 1.52991 * 109.47243 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47526 * 65.00163 * 4 3 2 6 6 C 1.36939 * 120.00150 * 264.53429 * 5 4 3 7 7 H 1.07999 * 120.00384 * 146.14414 * 6 5 4 8 8 C 1.38810 * 119.99862 * 326.14742 * 6 5 4 9 9 N 1.31629 * 120.00066 * 337.55833 * 8 6 5 10 10 Si 1.86800 * 120.00463 * 157.55645 * 8 6 5 11 11 H 1.48501 * 109.46712 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47412 * 119.99502 * 10 8 6 13 13 H 1.48498 * 109.47401 * 240.00398 * 10 8 6 14 14 C 1.46504 * 120.00132 * 84.53246 * 5 4 3 15 15 C 1.50692 * 109.46952 * 90.00397 * 14 5 4 16 16 C 1.38332 * 119.86943 * 105.00277 * 15 14 5 17 17 C 1.37952 * 120.17699 * 180.29177 * 16 15 14 18 18 C 1.39595 * 119.90231 * 359.47695 * 17 16 15 19 19 C 1.47829 * 120.13213 * 180.22562 * 18 17 16 20 20 N 1.31220 * 125.72273 * 179.97438 * 19 18 17 21 21 C 1.34160 * 108.64710 * 179.83994 * 20 19 18 22 22 C 1.34552 * 107.83754 * 0.41640 * 21 20 19 23 23 O 1.34418 * 125.72735 * 0.29330 * 19 18 17 24 24 C 1.39524 * 119.73499 * 0.52001 * 18 17 16 25 25 C 1.38211 * 119.82654 * 359.73055 * 24 18 17 26 26 F 1.35101 * 119.95439 * 180.02562 * 25 24 18 27 27 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47025 * 299.99945 * 1 2 3 29 29 H 1.09000 * 109.46908 * 60.00322 * 1 2 3 30 30 H 1.08997 * 109.47192 * 59.99849 * 3 2 1 31 31 H 1.09007 * 109.47315 * 300.00145 * 3 2 1 32 32 H 1.08998 * 109.47351 * 304.99976 * 4 3 2 33 33 H 1.09007 * 109.47337 * 185.00110 * 4 3 2 34 34 H 0.96996 * 119.99950 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.46968 * 330.00126 * 14 5 4 36 36 H 1.09001 * 109.46964 * 210.00545 * 14 5 4 37 37 H 1.08005 * 119.91376 * 0.02562 * 16 15 14 38 38 H 1.07995 * 120.05320 * 179.72277 * 17 16 15 39 39 H 1.07992 * 126.08650 * 180.14714 * 21 20 19 40 40 H 1.07999 * 126.36888 * 179.77991 * 22 21 20 41 41 H 1.07995 * 120.08661 * 179.71033 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2047 -0.7847 -1.3051 7 1 3.9927 -1.3337 -2.2107 8 6 4.7092 -1.4467 -0.1942 9 7 5.3714 -0.7779 0.7260 10 14 4.4483 -3.2867 -0.0050 11 1 3.6792 -3.7996 -1.1672 12 1 5.7655 -3.9697 0.0565 13 1 3.6933 -3.5536 1.2455 14 6 4.1711 1.3875 -2.4488 15 6 5.5929 1.8852 -2.4893 16 6 6.4960 1.3192 -3.3711 17 6 7.8007 1.7658 -3.4093 18 6 8.2076 2.7991 -2.5634 19 6 9.6032 3.2850 -2.6036 20 7 10.1017 4.2456 -1.8616 21 6 11.3964 4.4027 -2.1761 22 6 11.6954 3.5182 -3.1449 23 8 10.5729 2.8211 -3.4106 24 6 7.2935 3.3672 -1.6756 25 6 5.9904 2.9077 -1.6429 26 9 5.1030 3.4562 -0.7846 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8464 -0.8900 32 1 3.8515 0.5682 0.8409 33 1 3.9786 2.1765 0.0889 34 1 5.7242 -1.2405 1.5020 35 1 3.4892 2.2374 -2.4203 36 1 3.9698 0.7899 -3.3379 37 1 6.1801 0.5226 -4.0284 38 1 8.5053 1.3195 -4.0953 39 1 12.0765 5.1155 -1.7337 40 1 12.6563 3.3904 -3.6210 41 1 7.6034 4.1637 -1.0153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411823508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:43 Heat of formation + Delta-G solvation = -28.395997 kcal Electronic energy + Delta-G solvation = -26897.366890 eV Core-core repulsion = 22887.185038 eV Total energy + Delta-G solvation = -4010.181852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.86540 -44.25386 -40.03636 -38.76948 -37.09398 -35.81116 -34.12360 -32.83347 -31.54691 -30.92933 -29.77197 -27.44909 -27.05853 -25.11202 -24.32070 -23.79297 -22.86142 -22.40485 -21.47704 -19.29299 -18.65514 -17.67546 -17.62781 -17.45200 -17.20156 -16.95079 -16.67567 -16.49378 -16.28451 -15.81901 -15.51690 -15.39404 -15.17896 -14.96965 -14.49642 -14.21527 -14.08695 -13.60997 -13.46628 -13.34890 -12.84551 -12.75811 -12.73303 -12.47804 -12.34191 -12.30008 -12.01487 -11.89498 -11.83037 -11.60759 -11.46208 -10.55506 -10.44660 -10.32873 -9.76835 -9.14752 -8.55763 -7.76405 -5.28213 -0.40567 0.28341 0.84748 1.47314 1.52436 1.60106 1.64068 1.75328 2.56096 2.70157 2.99986 3.21944 3.37945 3.43398 3.77804 3.81801 3.97717 4.05889 4.08645 4.19922 4.35889 4.43766 4.55009 4.60253 4.63293 4.69250 4.73807 4.81093 4.84719 4.87910 4.92331 5.02747 5.08802 5.15156 5.19840 5.23126 5.39871 5.53659 5.74170 5.82952 5.93248 6.45487 6.66560 6.69534 7.21889 7.91151 8.41169 9.22710 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003740 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.558704 B = 7484.808809 C = 8367.050890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.055 3.945 4 C 0.126 3.874 5 N -0.574 5.574 6 C -0.234 4.234 7 H 0.061 0.939 8 C -0.030 4.030 9 N -0.917 5.917 10 Si 0.949 3.051 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.299 1.299 14 C 0.172 3.828 15 C -0.099 4.099 16 C -0.086 4.086 17 C -0.091 4.091 18 C -0.022 4.022 19 C 0.220 3.780 20 N -0.505 5.505 21 C -0.062 4.062 22 C -0.058 4.058 23 O -0.204 6.204 24 C -0.115 4.115 25 C 0.088 3.912 26 F -0.140 7.140 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.245 0.755 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.216 0.784 40 H 0.267 0.733 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 8.888 -9.302 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.023 4.023 4 C 0.000 4.000 5 N -0.293 5.293 6 C -0.365 4.365 7 H 0.079 0.921 8 C -0.227 4.227 9 N -0.562 5.562 10 Si 0.779 3.221 11 H -0.191 1.191 12 H -0.224 1.224 13 H -0.226 1.226 14 C 0.046 3.954 15 C -0.104 4.104 16 C -0.105 4.105 17 C -0.110 4.110 18 C -0.024 4.024 19 C 0.018 3.982 20 N -0.235 5.235 21 C -0.201 4.201 22 C -0.128 4.128 23 O -0.089 6.089 24 C -0.135 4.135 25 C 0.068 3.932 26 F -0.119 7.119 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.232 0.768 40 H 0.283 0.717 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.535 8.971 -8.718 13.679 hybrid contribution 0.152 -0.848 0.535 1.014 sum 5.686 8.123 -8.183 12.856 Atomic orbital electron populations 1.22833 0.81510 1.02728 1.00046 1.88120 1.19694 1.28675 1.95194 1.23200 0.96715 0.84000 0.98393 1.21271 0.89654 0.97649 0.91388 1.44004 1.74600 1.03642 1.07024 1.19172 1.34335 0.83627 0.99340 0.92130 1.25555 0.97275 1.00561 0.99291 1.70132 1.37099 1.36277 1.12702 0.85501 0.76657 0.82466 0.77497 1.19118 1.22396 1.22610 1.20182 0.88823 0.94566 0.91780 1.21455 1.01902 0.92737 0.94314 1.21027 0.91960 0.99129 0.98334 1.21399 0.96693 0.94781 0.98163 1.16925 0.85878 0.99330 1.00277 1.23637 0.90908 0.93344 0.90360 1.70633 1.11284 1.16558 1.25016 1.24001 0.92081 1.03876 1.00148 1.26151 0.90903 0.94450 1.01256 1.84509 1.19250 1.53061 1.52128 1.20889 0.91001 1.01757 0.99870 1.17390 0.87215 0.96339 0.92230 1.91343 1.67602 1.84526 1.68411 0.89734 0.93770 0.93692 0.93829 0.94023 0.91409 0.92075 0.94529 0.92003 0.90687 0.82849 0.82746 0.76766 0.71704 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -17.23 10.44 -148.98 -1.55 -18.79 16 3 C 0.06 2.24 6.28 71.98 0.45 2.69 16 4 C 0.13 6.04 5.62 86.38 0.49 6.52 16 5 N -0.57 -27.54 2.39 -706.36 -1.69 -29.23 16 6 C -0.23 -12.43 9.27 84.03 0.78 -11.65 16 7 H 0.06 3.17 7.92 -2.91 -0.02 3.15 16 8 C -0.03 -1.68 4.91 84.86 0.42 -1.26 16 9 N -0.92 -54.29 11.35 21.65 0.25 -54.04 16 10 Si 0.95 45.89 29.61 68.60 2.03 47.92 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 13 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 14 C 0.17 6.77 5.53 85.63 0.47 7.24 16 15 C -0.10 -3.78 5.47 -19.77 -0.11 -3.89 16 16 C -0.09 -2.82 9.65 22.22 0.21 -2.61 16 17 C -0.09 -2.78 9.71 22.53 0.22 -2.56 16 18 C -0.02 -0.75 5.87 -20.10 -0.12 -0.86 16 19 C 0.22 6.87 7.90 87.32 0.69 7.56 16 20 N -0.50 -15.55 10.91 -305.09 -3.33 -18.88 16 21 C -0.06 -1.31 11.87 83.49 0.99 -0.32 16 22 C -0.06 -1.01 12.17 66.98 0.82 -0.19 16 23 O -0.20 -5.23 10.52 -8.34 -0.09 -5.32 16 24 C -0.12 -4.20 9.67 22.57 0.22 -3.98 16 25 C 0.09 3.45 7.24 22.34 0.16 3.61 16 26 F -0.14 -5.68 13.76 44.97 0.62 -5.06 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.54 8.12 -2.38 -0.02 1.53 16 32 H 0.07 3.84 5.35 -2.39 -0.01 3.82 16 33 H 0.06 2.85 4.90 -2.38 -0.01 2.84 16 34 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 35 H 0.06 2.25 7.99 -2.39 -0.02 2.23 16 36 H 0.07 2.71 7.84 -2.39 -0.02 2.69 16 37 H 0.15 4.37 7.99 -2.91 -0.02 4.35 16 38 H 0.15 3.80 7.90 -2.91 -0.02 3.77 16 39 H 0.22 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.27 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.14 4.93 7.83 -2.91 -0.02 4.91 16 Total: -1.00 -71.09 355.33 4.22 -66.87 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.05 Total: 14.17 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.94 Total: 2.36 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -4.77 Total: -102.15 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -1.64 Total: -24.11 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.62 Total: -5.06 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.09 4.22 -66.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411823508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.473 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds