Wall clock time and date at job start Tue Mar 31 2020 13:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99852 * 2 1 4 4 H 1.48496 * 109.47224 * 269.99790 * 3 2 1 5 5 H 1.48498 * 109.47108 * 30.00352 * 3 2 1 6 6 H 1.48502 * 109.47191 * 149.99993 * 3 2 1 7 7 C 1.37877 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99849 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47340 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.46911 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47387 * 304.99599 * 11 10 9 13 13 N 1.46896 * 109.47329 * 65.00334 * 11 10 9 14 14 C 1.50705 * 109.46991 * 185.00276 * 11 10 9 15 15 O 1.21284 * 119.99809 * 260.00041 * 14 11 10 16 16 N 1.34764 * 120.00405 * 79.99866 * 14 11 10 17 17 C 1.46498 * 120.00342 * 179.97438 * 16 14 11 18 18 H 1.08997 * 108.51266 * 327.01052 * 17 16 14 19 19 C 1.51880 * 108.67015 * 209.01260 * 17 16 14 20 20 C 1.53516 * 108.98329 * 178.38062 * 19 17 16 21 21 S 1.81608 * 107.32211 * 72.55531 * 20 19 17 22 22 C 1.76459 * 102.63420 * 313.56006 * 21 20 19 23 23 C 1.39626 * 117.72714 * 192.81565 * 22 21 20 24 24 C 1.37745 * 120.62178 * 181.30708 * 23 22 21 25 25 C 1.38338 * 119.51128 * 0.30013 * 24 23 22 26 26 C 1.37771 * 120.00988 * 359.11185 * 25 24 23 27 27 C 1.38173 * 122.29216 * 13.51665 * 22 21 20 28 28 H 0.96999 * 120.00125 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46791 * 59.99818 * 9 7 2 30 30 H 1.09001 * 109.47028 * 300.00599 * 9 7 2 31 31 H 1.09003 * 109.46907 * 60.00141 * 10 9 7 32 32 H 1.08998 * 109.46833 * 300.00489 * 10 9 7 33 33 H 1.00905 * 111.00447 * 59.99572 * 13 11 10 34 34 H 1.00906 * 111.00278 * 183.95258 * 13 11 10 35 35 H 0.97001 * 119.99854 * 359.97438 * 16 14 11 36 36 H 1.08993 * 109.55566 * 298.23843 * 19 17 16 37 37 H 1.09004 * 109.54615 * 58.53490 * 19 17 16 38 38 H 1.09001 * 109.88488 * 192.00682 * 20 19 17 39 39 H 1.08998 * 109.88745 * 313.02705 * 20 19 17 40 40 H 1.08001 * 119.68722 * 1.33049 * 23 22 21 41 41 H 1.08002 * 120.24007 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.99070 * 179.39835 * 25 24 23 43 43 H 1.08002 * 119.47482 * 180.29688 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7879 -5.0073 0.8404 13 7 0.7290 -5.1182 -1.2567 14 6 2.4549 -6.1299 0.1227 15 8 2.7870 -6.7532 -0.8633 16 7 2.9573 -6.4593 1.3290 17 6 3.9043 -7.5706 1.4495 18 1 3.6501 -8.3242 0.7042 19 6 3.7596 -8.1850 2.8310 20 6 4.7204 -9.3763 2.9508 21 16 6.4024 -8.7037 3.0790 22 6 6.4342 -7.4958 1.7930 23 6 7.6744 -6.9686 1.4274 24 6 7.7655 -6.0029 0.4495 25 6 6.6145 -5.5492 -0.1695 26 6 5.3905 -6.0760 0.1803 27 6 5.2851 -7.0581 1.1629 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8719 -3.6044 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 1.3491 -5.1022 -2.0526 34 1 0.1646 -5.9546 -1.2548 35 1 2.6920 -5.9606 2.1176 36 1 4.0049 -7.4409 3.5887 37 1 2.7345 -8.5274 2.9723 38 1 4.4836 -9.9553 3.8434 39 1 4.6391 -10.0085 2.0666 40 1 8.5706 -7.3217 1.9158 41 1 8.7280 -5.5996 0.1713 42 1 6.6760 -4.7852 -0.9304 43 1 4.4980 -5.7189 -0.3119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:22 Heat of formation + Delta-G solvation = -20.127079 kcal Electronic energy + Delta-G solvation = -24698.811899 eV Core-core repulsion = 21255.201791 eV Total energy + Delta-G solvation = -3443.610109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71298 -38.93146 -36.59586 -35.21866 -33.15547 -32.82428 -30.93118 -30.88307 -30.14773 -27.39363 -25.79171 -23.56703 -23.38745 -22.78086 -20.94499 -20.71857 -19.85154 -18.06507 -17.24450 -16.78648 -16.25132 -16.08912 -15.80114 -15.46130 -15.10582 -14.75438 -14.48252 -14.24643 -13.79579 -13.64405 -13.43082 -13.41339 -13.03034 -12.90721 -12.61270 -12.34723 -12.05664 -11.73934 -11.58866 -11.47785 -11.04668 -10.91667 -10.71697 -10.58215 -10.34571 -10.22573 -9.85427 -9.82070 -9.41907 -9.33524 -9.03211 -8.87644 -8.40578 -8.25040 -7.62246 -5.96061 -3.98292 1.03346 1.24191 1.31469 2.08498 2.60528 3.04647 3.33584 3.39985 3.42832 3.62052 4.17218 4.33675 4.43935 4.48622 4.69693 4.78613 4.86084 4.89220 5.02445 5.13497 5.17190 5.25663 5.34707 5.39504 5.44787 5.49482 5.57421 5.70420 5.75176 5.86853 6.11211 6.21472 6.35124 6.39416 6.51019 6.57799 6.80370 7.03490 7.27203 7.48064 7.71895 7.73892 7.92480 8.09734 8.16125 8.45486 9.09508 9.65106 11.14815 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.003355 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.347229 B = 8343.301871 C = 9239.700498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.096 4.096 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.484 3.516 15 O -0.548 6.548 16 N -0.724 5.724 17 C 0.181 3.819 18 H 0.098 0.902 19 C -0.130 4.130 20 C -0.100 4.100 21 S -0.128 6.128 22 C -0.071 4.071 23 C -0.108 4.108 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.088 4.088 27 C -0.099 4.099 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.348 0.652 34 H 0.334 0.666 35 H 0.406 0.594 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.474 -19.608 6.295 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.270 3.730 15 O -0.426 6.426 16 N -0.376 5.376 17 C 0.076 3.924 18 H 0.116 0.884 19 C -0.169 4.169 20 C -0.249 4.249 21 S 0.114 5.886 22 C -0.184 4.184 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.140 4.140 26 C -0.107 4.107 27 C -0.106 4.106 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.162 0.838 34 H 0.146 0.854 35 H 0.241 0.759 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.135 0.865 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.974 -19.653 6.625 23.464 hybrid contribution 0.056 0.686 -0.656 0.951 sum 11.030 -18.967 5.970 22.739 Atomic orbital electron populations 1.69972 1.05948 1.26443 1.50796 1.24983 0.94797 0.99050 0.95441 0.86659 0.79853 0.83769 0.78093 1.20707 1.21267 1.19983 1.21264 0.92885 0.91288 1.50661 0.92996 1.19008 0.93511 0.89785 0.98211 1.21679 0.98899 0.92156 1.00678 1.21878 0.93519 0.93092 0.95244 0.88284 1.58986 1.26862 1.44321 1.03190 1.22870 0.81843 0.85741 0.82536 1.90681 1.61080 1.53884 1.36912 1.46291 1.45749 1.34690 1.10830 1.19413 0.85649 0.89544 0.97808 0.88447 1.21867 1.00866 0.97283 0.96913 1.23690 0.94038 1.00093 1.07063 1.85480 1.18719 1.43215 1.41221 1.21249 0.95587 1.01326 1.00270 1.20823 0.95493 0.98250 0.98480 1.21072 0.98716 0.96474 0.95904 1.21187 0.92483 1.00064 1.00265 1.21617 0.98920 0.94846 0.95350 1.19891 0.93432 0.98832 0.98462 0.93083 0.94656 0.96879 0.92755 0.92862 0.83785 0.85391 0.75878 0.89388 0.88953 0.86490 0.88780 0.85664 0.85444 0.85563 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 10 C -0.10 -1.85 4.78 -26.73 -0.13 -1.98 16 11 C 0.08 1.23 3.15 -68.87 -0.22 1.02 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 N -0.81 -12.88 8.44 -5.66 -0.05 -12.93 16 14 C 0.48 6.95 5.18 -10.99 -0.06 6.89 16 15 O -0.55 -9.20 14.35 5.55 0.08 -9.12 16 16 N -0.72 -8.42 4.64 -55.80 -0.26 -8.68 16 17 C 0.18 2.00 2.37 -69.97 -0.17 1.84 16 18 H 0.10 1.21 7.45 -51.93 -0.39 0.82 16 19 C -0.13 -1.02 5.26 -27.03 -0.14 -1.17 16 20 C -0.10 -0.73 6.52 37.43 0.24 -0.49 16 21 S -0.13 -1.26 21.99 -107.50 -2.36 -3.63 16 22 C -0.07 -0.86 6.05 -39.09 -0.24 -1.10 16 23 C -0.11 -1.24 9.65 -39.24 -0.38 -1.62 16 24 C -0.10 -1.16 10.06 -39.72 -0.40 -1.56 16 25 C -0.12 -1.57 10.03 -39.72 -0.40 -1.97 16 26 C -0.09 -1.27 8.82 -39.35 -0.35 -1.62 16 27 C -0.10 -1.28 5.64 -104.56 -0.59 -1.87 16 28 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 29 H 0.04 0.96 7.75 -51.93 -0.40 0.55 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.35 5.66 8.58 -39.29 -0.34 5.32 16 34 H 0.33 4.60 9.06 -39.29 -0.36 4.24 16 35 H 0.41 4.05 8.61 -40.82 -0.35 3.70 16 36 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 40 H 0.13 1.21 8.05 -52.49 -0.42 0.79 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 43 H 0.13 2.15 4.27 -52.49 -0.22 1.92 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -32.28 361.42 -11.03 -43.31 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.24 Total: 11.21 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -3.36 Total: -16.26 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.43 Total: -47.53 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.36 Total: -3.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.28 -11.03 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.182 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds