Wall clock time and date at job start Tue Mar 31 2020 13:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48499 * 109.47268 * 240.00534 * 3 2 1 5 5 H 1.48503 * 109.47013 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46768 * 120.00298 * 3 2 1 7 7 C 1.37873 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46925 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47148 * 304.99656 * 11 10 9 13 13 N 1.46891 * 109.47554 * 64.99706 * 11 10 9 14 14 C 1.50696 * 109.46884 * 185.00114 * 11 10 9 15 15 O 1.21289 * 119.99987 * 259.99292 * 14 11 10 16 16 N 1.34777 * 120.00637 * 79.99887 * 14 11 10 17 17 C 1.46501 * 120.00421 * 180.02562 * 16 14 11 18 18 H 1.08997 * 108.62100 * 33.05716 * 17 16 14 19 19 C 1.51891 * 108.56209 * 151.05877 * 17 16 14 20 20 C 1.53532 * 108.96251 * 181.55357 * 19 17 16 21 21 S 1.81610 * 107.31846 * 287.41641 * 20 19 17 22 22 C 1.76450 * 102.63096 * 46.40932 * 21 20 19 23 23 C 1.39635 * 117.72600 * 166.65719 * 22 21 20 24 24 C 1.37743 * 120.62456 * 179.52491 * 23 22 21 25 25 C 1.38341 * 119.51665 * 359.82946 * 24 23 22 26 26 C 1.37769 * 120.00542 * 0.33069 * 25 24 23 27 27 C 1.38171 * 122.30718 * 346.60611 * 22 21 20 28 28 H 0.97005 * 120.00396 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46960 * 59.99465 * 9 7 2 30 30 H 1.09001 * 109.46745 * 300.00065 * 9 7 2 31 31 H 1.08998 * 109.47113 * 60.00075 * 10 9 7 32 32 H 1.08996 * 109.46980 * 299.99589 * 10 9 7 33 33 H 1.00900 * 111.00578 * 296.04520 * 13 11 10 34 34 H 1.00901 * 111.00179 * 59.99786 * 13 11 10 35 35 H 0.97005 * 119.99245 * 359.97438 * 16 14 11 36 36 H 1.08997 * 109.56643 * 61.70455 * 19 17 16 37 37 H 1.09002 * 109.55099 * 301.38969 * 19 17 16 38 38 H 1.09000 * 109.87989 * 167.96460 * 20 19 17 39 39 H 1.09000 * 109.88438 * 46.87080 * 20 19 17 40 40 H 1.07999 * 119.68691 * 359.49525 * 23 22 21 41 41 H 1.07996 * 120.23922 * 179.81803 * 24 23 22 42 42 H 1.07994 * 119.99488 * 180.35507 * 25 24 23 43 43 H 1.08004 * 119.47043 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0046 12 1 0.7878 -5.0080 0.8370 13 7 0.7289 -5.1170 -1.2601 14 6 2.4548 -6.1299 0.1183 15 8 2.7869 -6.7524 -0.8683 16 7 2.9573 -6.4605 1.3243 17 6 3.9052 -7.5711 1.4436 18 1 4.5095 -7.6119 0.5374 19 6 4.8196 -7.3015 2.6261 20 6 5.8423 -8.4414 2.7360 21 16 4.9576 -9.9042 3.3489 22 6 3.5090 -9.9291 2.3418 23 6 2.7323 -11.0895 2.3495 24 6 1.5839 -11.1703 1.5931 25 6 1.1978 -10.0881 0.8226 26 6 1.9636 -8.9430 0.8101 27 6 3.1321 -8.8515 1.5635 28 1 -0.4851 0.8401 0.0004 29 1 0.6246 -2.5562 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 2.8719 -3.6051 0.8873 32 1 2.8718 -3.6035 -0.8927 33 1 0.0240 -4.3990 -1.3358 34 1 1.3489 -5.1004 -2.0559 35 1 2.6919 -5.9624 2.1133 36 1 4.2288 -7.2521 3.5407 37 1 5.3415 -6.3565 2.4756 38 1 6.6314 -8.1652 3.4353 39 1 6.2708 -8.6508 1.7558 40 1 3.0351 -11.9318 2.9538 41 1 0.9895 -12.0718 1.6015 42 1 0.2958 -10.1410 0.2311 43 1 1.6539 -8.1032 0.2058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:25 Heat of formation + Delta-G solvation = -21.412379 kcal Electronic energy + Delta-G solvation = -24419.318025 eV Core-core repulsion = 20975.652181 eV Total energy + Delta-G solvation = -3443.665844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61779 -38.88138 -36.56016 -35.45055 -33.08548 -32.87311 -30.95462 -30.89159 -29.94235 -27.45695 -25.82524 -23.72197 -23.40543 -22.79662 -20.96325 -20.74153 -19.85624 -18.02241 -17.44593 -16.68029 -16.26729 -16.16116 -15.74339 -15.11306 -14.92291 -14.64219 -14.50983 -14.22841 -13.81771 -13.58814 -13.43079 -13.30627 -13.17451 -12.92070 -12.70097 -12.57824 -12.19913 -11.77805 -11.66113 -11.48076 -11.14733 -11.01997 -10.94752 -10.74557 -10.32906 -10.04424 -10.00662 -9.83198 -9.38659 -9.29846 -9.23076 -8.88121 -8.47794 -8.26368 -7.62500 -6.12292 -4.15825 1.01067 1.21592 1.33020 2.09706 2.76330 3.05053 3.25482 3.30738 3.32761 3.59857 4.21068 4.35480 4.37994 4.48787 4.74450 4.82018 4.86168 5.00628 5.10479 5.16453 5.22232 5.23725 5.24082 5.38053 5.49129 5.52223 5.59314 5.68716 5.73129 5.85501 6.10498 6.21420 6.23929 6.36472 6.44919 6.50236 6.78136 6.81227 7.33349 7.46248 7.54211 7.59962 7.83197 7.84757 8.26097 8.31032 8.89850 9.49304 10.98526 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.002845 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.399895 B = 9839.122636 C =10829.760463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.532 6.532 16 N -0.727 5.727 17 C 0.184 3.816 18 H 0.100 0.900 19 C -0.131 4.131 20 C -0.099 4.099 21 S -0.129 6.129 22 C -0.071 4.071 23 C -0.108 4.108 24 C -0.104 4.104 25 C -0.123 4.123 26 C -0.089 4.089 27 C -0.098 4.098 28 H 0.263 0.737 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.355 0.645 34 H 0.346 0.654 35 H 0.405 0.595 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.171 -20.219 6.817 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.408 6.408 16 N -0.380 5.380 17 C 0.079 3.921 18 H 0.118 0.882 19 C -0.170 4.170 20 C -0.248 4.248 21 S 0.112 5.888 22 C -0.184 4.184 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.109 4.109 27 C -0.105 4.105 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.240 0.760 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.136 0.864 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.477 -21.948 7.275 24.301 hybrid contribution 0.268 2.964 -0.811 3.085 sum 7.746 -18.984 6.464 21.498 Atomic orbital electron populations 1.69935 1.06023 1.26957 1.50230 1.25008 0.94871 0.99309 0.95069 0.86642 0.79605 0.83014 0.78668 1.20216 1.21185 1.20205 1.21132 0.92968 0.90903 1.51403 0.92784 1.19095 0.93690 0.91066 0.97379 1.22381 0.99893 0.93894 1.01500 1.21490 0.94633 0.92181 0.95769 0.88463 1.58752 1.18437 1.55984 1.03110 1.20974 0.80965 0.84212 0.82431 1.90670 1.59718 1.53425 1.36967 1.46106 1.47127 1.34280 1.10510 1.19389 0.89383 0.83524 0.99837 0.88242 1.21886 0.96871 0.99164 0.99112 1.23713 1.00190 0.95022 1.05900 1.85465 1.18541 1.37196 1.47557 1.21279 0.99203 0.96667 1.01202 1.20824 0.95544 0.96145 1.00596 1.21059 0.96153 0.98716 0.96437 1.21153 1.00151 0.93469 0.99491 1.21698 0.93399 0.98907 0.96860 1.19944 0.97288 0.94634 0.98633 0.92776 0.96395 0.96312 0.92518 0.92650 0.82902 0.84094 0.76017 0.89456 0.88677 0.86436 0.88675 0.85700 0.85553 0.85722 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.56 4.78 -26.73 -0.13 -2.69 16 11 C 0.07 1.19 3.21 -68.87 -0.22 0.97 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 13 N -0.83 -13.56 8.93 -5.66 -0.05 -13.61 16 14 C 0.53 8.02 5.22 -10.99 -0.06 7.96 16 15 O -0.53 -9.54 14.31 5.55 0.08 -9.46 16 16 N -0.73 -8.82 4.65 -55.80 -0.26 -9.08 16 17 C 0.18 2.10 2.36 -69.96 -0.17 1.93 16 18 H 0.10 1.30 7.46 -51.93 -0.39 0.91 16 19 C -0.13 -1.11 5.25 -27.02 -0.14 -1.25 16 20 C -0.10 -0.77 6.52 37.43 0.24 -0.52 16 21 S -0.13 -1.26 21.99 -107.50 -2.36 -3.63 16 22 C -0.07 -0.82 6.05 -39.08 -0.24 -1.06 16 23 C -0.11 -1.16 9.65 -39.24 -0.38 -1.54 16 24 C -0.10 -1.07 10.06 -39.72 -0.40 -1.47 16 25 C -0.12 -1.45 10.03 -39.72 -0.40 -1.85 16 26 C -0.09 -1.21 8.83 -39.35 -0.35 -1.56 16 27 C -0.10 -1.23 5.63 -104.56 -0.59 -1.81 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.36 5.88 7.55 -39.29 -0.30 5.58 16 34 H 0.35 5.74 8.58 -39.29 -0.34 5.41 16 35 H 0.40 4.18 8.60 -40.82 -0.35 3.83 16 36 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 40 H 0.13 1.12 8.05 -52.49 -0.42 0.70 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.14 2.12 4.26 -52.48 -0.22 1.90 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -30.84 359.44 -10.96 -41.80 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.13 Total: 12.91 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -3.36 Total: -15.37 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.43 Total: -47.63 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.36 Total: -3.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.84 -10.96 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.389 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds