Wall clock time and date at job start Tue Mar 31 2020 13:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48499 * 109.47268 * 240.00534 * 3 2 1 5 5 H 1.48503 * 109.47013 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46768 * 120.00298 * 3 2 1 7 7 C 1.37873 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46925 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47148 * 304.99656 * 11 10 9 13 13 N 1.46891 * 109.47554 * 64.99706 * 11 10 9 14 14 C 1.50696 * 109.46884 * 185.00114 * 11 10 9 15 15 O 1.21289 * 119.99987 * 259.99292 * 14 11 10 16 16 N 1.34777 * 120.00637 * 79.99887 * 14 11 10 17 17 C 1.46501 * 120.00421 * 180.02562 * 16 14 11 18 18 H 1.08997 * 108.62100 * 33.05716 * 17 16 14 19 19 C 1.51891 * 108.56209 * 151.05877 * 17 16 14 20 20 C 1.53532 * 108.96251 * 181.55357 * 19 17 16 21 21 S 1.81610 * 107.31846 * 287.41641 * 20 19 17 22 22 C 1.76450 * 102.63096 * 46.40932 * 21 20 19 23 23 C 1.39635 * 117.72600 * 166.65719 * 22 21 20 24 24 C 1.37743 * 120.62456 * 179.52491 * 23 22 21 25 25 C 1.38341 * 119.51665 * 359.82946 * 24 23 22 26 26 C 1.37769 * 120.00542 * 0.33069 * 25 24 23 27 27 C 1.38171 * 122.30718 * 346.60611 * 22 21 20 28 28 H 0.97005 * 120.00396 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46960 * 59.99465 * 9 7 2 30 30 H 1.09001 * 109.46745 * 300.00065 * 9 7 2 31 31 H 1.08998 * 109.47113 * 60.00075 * 10 9 7 32 32 H 1.08996 * 109.46980 * 299.99589 * 10 9 7 33 33 H 1.00900 * 111.00578 * 296.04520 * 13 11 10 34 34 H 1.00901 * 111.00179 * 59.99786 * 13 11 10 35 35 H 0.97005 * 119.99245 * 359.97438 * 16 14 11 36 36 H 1.08997 * 109.56643 * 61.70455 * 19 17 16 37 37 H 1.09002 * 109.55099 * 301.38969 * 19 17 16 38 38 H 1.09000 * 109.87989 * 167.96460 * 20 19 17 39 39 H 1.09000 * 109.88438 * 46.87080 * 20 19 17 40 40 H 1.07999 * 119.68691 * 359.49525 * 23 22 21 41 41 H 1.07996 * 120.23922 * 179.81803 * 24 23 22 42 42 H 1.07994 * 119.99488 * 180.35507 * 25 24 23 43 43 H 1.08004 * 119.47043 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0046 12 1 0.7878 -5.0080 0.8370 13 7 0.7289 -5.1170 -1.2601 14 6 2.4548 -6.1299 0.1183 15 8 2.7869 -6.7524 -0.8683 16 7 2.9573 -6.4605 1.3243 17 6 3.9052 -7.5711 1.4436 18 1 4.5095 -7.6119 0.5374 19 6 4.8196 -7.3015 2.6261 20 6 5.8423 -8.4414 2.7360 21 16 4.9576 -9.9042 3.3489 22 6 3.5090 -9.9291 2.3418 23 6 2.7323 -11.0895 2.3495 24 6 1.5839 -11.1703 1.5931 25 6 1.1978 -10.0881 0.8226 26 6 1.9636 -8.9430 0.8101 27 6 3.1321 -8.8515 1.5635 28 1 -0.4851 0.8401 0.0004 29 1 0.6246 -2.5562 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 2.8719 -3.6051 0.8873 32 1 2.8718 -3.6035 -0.8927 33 1 0.0240 -4.3990 -1.3358 34 1 1.3489 -5.1004 -2.0559 35 1 2.6919 -5.9624 2.1133 36 1 4.2288 -7.2521 3.5407 37 1 5.3415 -6.3565 2.4756 38 1 6.6314 -8.1652 3.4353 39 1 6.2708 -8.6508 1.7558 40 1 3.0351 -11.9318 2.9538 41 1 0.9895 -12.0718 1.6015 42 1 0.2958 -10.1410 0.2311 43 1 1.6539 -8.1032 0.2058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424077387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:24 Heat of formation + Delta-G solvation = -40.977132 kcal Electronic energy + Delta-G solvation = -24420.166416 eV Core-core repulsion = 20975.652181 eV Total energy + Delta-G solvation = -3444.514235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68840 -39.91006 -37.57294 -36.88378 -34.84641 -34.01047 -31.84185 -31.71314 -31.68853 -28.69588 -27.21076 -25.29489 -24.20028 -23.66751 -22.47375 -21.72504 -21.13553 -18.95289 -18.82179 -18.12781 -17.65635 -17.01770 -16.61256 -16.51116 -16.10074 -15.97361 -15.85366 -15.47044 -14.91335 -14.75914 -14.55658 -14.32334 -14.19687 -14.05349 -13.79859 -13.63253 -13.47705 -13.32241 -12.93823 -12.68687 -12.55698 -12.44176 -12.34356 -11.82194 -11.80955 -11.71348 -11.32252 -11.10085 -10.82490 -10.63598 -10.56078 -10.32719 -9.78440 -9.65910 -8.39696 -8.21714 -6.32220 0.14751 0.32373 0.58956 1.36161 1.39923 1.41253 1.49085 1.53564 2.00068 2.39685 2.70301 3.12086 3.41979 3.57580 3.68386 3.73255 3.83803 3.97370 4.10918 4.12050 4.17286 4.23801 4.35567 4.40668 4.50136 4.63259 4.65932 4.73260 4.81744 4.82865 4.95548 4.98898 5.08403 5.21726 5.30904 5.45236 5.46227 5.58230 5.65142 5.80287 5.91762 6.04692 6.20604 6.44391 6.46054 6.83426 7.14960 7.37057 8.88825 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.002845 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.399895 B = 9839.122636 C =10829.760463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.107 0.893 13 N -0.829 5.829 14 C 0.532 3.468 15 O -0.561 6.561 16 N -0.713 5.713 17 C 0.186 3.814 18 H 0.081 0.919 19 C -0.124 4.124 20 C -0.095 4.095 21 S -0.129 6.129 22 C -0.082 4.082 23 C -0.114 4.114 24 C -0.100 4.100 25 C -0.134 4.134 26 C -0.114 4.114 27 C -0.110 4.110 28 H 0.264 0.736 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.353 0.647 34 H 0.344 0.656 35 H 0.415 0.585 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.133 0.867 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -20.877 8.258 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.034 4.034 12 H 0.125 0.875 13 N -0.361 5.361 14 C 0.319 3.681 15 O -0.439 6.439 16 N -0.365 5.365 17 C 0.081 3.919 18 H 0.099 0.901 19 C -0.163 4.163 20 C -0.243 4.243 21 S 0.113 5.887 22 C -0.195 4.195 23 C -0.136 4.136 24 C -0.119 4.119 25 C -0.154 4.154 26 C -0.134 4.134 27 C -0.118 4.118 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.252 0.748 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.163 0.837 39 H 0.115 0.885 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.151 0.849 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.030 -22.618 8.751 25.878 hybrid contribution -0.220 3.098 -1.245 3.346 sum 8.810 -19.520 7.506 22.694 Atomic orbital electron populations 1.70054 1.07515 1.27830 1.51292 1.25864 0.95712 1.02981 0.94756 0.85606 0.78380 0.78650 0.79059 1.19641 1.20942 1.19118 1.21602 0.93397 0.92437 1.50931 0.92584 1.18962 0.94040 0.92031 0.95672 1.22124 0.98760 0.93528 1.01550 1.21406 0.94706 0.91326 0.95965 0.87512 1.58758 1.18363 1.55695 1.03271 1.20678 0.80648 0.83773 0.82977 1.90659 1.60660 1.54401 1.38199 1.45972 1.46481 1.34208 1.09843 1.19474 0.89134 0.82850 1.00445 0.90094 1.21869 0.96566 1.00146 0.97765 1.23827 1.00213 0.93587 1.06712 1.85438 1.17738 1.38519 1.47009 1.21524 1.00199 0.96608 1.01138 1.21176 0.95454 0.96443 1.00562 1.21381 0.96149 0.99112 0.95264 1.21354 1.00442 0.93558 1.00064 1.21664 0.94802 0.99127 0.97811 1.20013 0.97249 0.95424 0.99075 0.92743 0.98026 0.98026 0.91307 0.93632 0.83210 0.84283 0.74802 0.88901 0.87246 0.83729 0.88538 0.83828 0.82640 0.84884 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.55 -29.42 9.11 25.60 0.23 -29.19 16 8 H 0.06 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.44 4.74 29.85 0.14 1.58 16 10 C -0.12 -4.47 4.78 30.59 0.15 -4.33 16 11 C 0.08 2.61 3.21 44.17 0.14 2.75 16 12 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 13 N -0.83 -27.68 8.93 -171.82 -1.54 -29.21 16 14 C 0.53 16.26 5.22 87.66 0.46 16.72 16 15 O -0.56 -20.52 14.31 -3.06 -0.04 -20.56 16 16 N -0.71 -16.89 4.65 -448.83 -2.09 -18.98 16 17 C 0.19 4.11 2.36 43.68 0.10 4.21 16 18 H 0.08 2.11 7.46 -2.39 -0.02 2.10 16 19 C -0.12 -1.84 5.25 30.41 0.16 -1.68 16 20 C -0.09 -1.23 6.52 72.16 0.47 -0.76 16 21 S -0.13 -2.25 21.99 -56.49 -1.24 -3.49 16 22 C -0.08 -1.80 6.05 22.59 0.14 -1.66 16 23 C -0.11 -2.25 9.65 22.49 0.22 -2.03 16 24 C -0.10 -1.89 10.06 22.18 0.22 -1.67 16 25 C -0.13 -3.13 10.03 22.18 0.22 -2.91 16 26 C -0.11 -3.15 8.83 22.42 0.20 -2.95 16 27 C -0.11 -2.72 5.63 -19.82 -0.11 -2.83 16 28 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 29 H 0.00 0.07 6.87 -2.39 -0.02 0.06 16 30 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.35 12.03 7.55 -89.69 -0.68 11.36 16 34 H 0.34 11.73 8.58 -89.69 -0.77 10.96 16 35 H 0.42 8.08 8.60 -92.70 -0.80 7.28 16 36 H 0.09 1.32 8.03 -2.39 -0.02 1.30 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.27 8.08 -2.39 -0.02 1.25 16 40 H 0.14 2.24 8.05 -2.91 -0.02 2.21 16 41 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.12 3.67 4.26 -2.91 -0.01 3.66 16 Total: -1.00 -66.67 359.44 -0.59 -67.25 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -1.19 Total: 37.82 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 3.20 Total: -23.98 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.34 Total: -101.82 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.04 Total: -20.56 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -1.24 Total: -3.49 kcal Total: -66.67 -0.59 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.275 kcal (2) G-P(sol) polarization free energy of solvation -66.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds