Wall clock time and date at job start Tue Mar 31 2020 13:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99857 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00266 * 3 2 1 5 5 H 1.48504 * 109.47582 * 30.00204 * 3 2 1 6 6 H 1.48503 * 109.47030 * 150.00269 * 3 2 1 7 7 C 1.37870 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00294 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47213 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46935 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47768 * 55.00109 * 11 10 9 13 13 N 1.46899 * 109.47452 * 295.00001 * 11 10 9 14 14 C 1.50696 * 109.47059 * 175.00015 * 11 10 9 15 15 O 1.21288 * 120.00310 * 100.00178 * 14 11 10 16 16 N 1.34778 * 120.00319 * 280.00035 * 14 11 10 17 17 C 1.46495 * 120.00523 * 179.97438 * 16 14 11 18 18 H 1.09008 * 108.62257 * 36.94897 * 17 16 14 19 19 C 1.51880 * 108.66847 * 154.99580 * 17 16 14 20 20 C 1.53525 * 108.96527 * 181.55744 * 19 17 16 21 21 S 1.81611 * 107.30918 * 287.38196 * 20 19 17 22 22 C 1.76466 * 102.62717 * 46.40413 * 21 20 19 23 23 C 1.39626 * 117.72305 * 167.21305 * 22 21 20 24 24 C 1.37740 * 120.62316 * 179.36101 * 23 22 21 25 25 C 1.38346 * 119.51487 * 359.73176 * 24 23 22 26 26 C 1.37758 * 120.00764 * 0.56819 * 25 24 23 27 27 C 1.38179 * 122.29578 * 346.77394 * 22 21 20 28 28 H 0.97005 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47543 * 59.99898 * 9 7 2 30 30 H 1.09002 * 109.47132 * 300.00063 * 9 7 2 31 31 H 1.08996 * 109.47384 * 60.00305 * 10 9 7 32 32 H 1.08996 * 109.46860 * 299.99680 * 10 9 7 33 33 H 1.00905 * 110.99805 * 300.00650 * 13 11 10 34 34 H 1.00901 * 111.00218 * 63.95198 * 13 11 10 35 35 H 0.96998 * 119.99542 * 359.97438 * 16 14 11 36 36 H 1.09009 * 109.55273 * 61.71526 * 19 17 16 37 37 H 1.08994 * 109.64388 * 301.45658 * 19 17 16 38 38 H 1.09001 * 109.88830 * 167.93326 * 20 19 17 39 39 H 1.08993 * 109.89201 * 46.83203 * 20 19 17 40 40 H 1.07991 * 119.69095 * 359.37896 * 23 22 21 41 41 H 1.08007 * 120.24436 * 179.75970 * 24 23 22 42 42 H 1.08002 * 119.99404 * 180.28387 * 25 24 23 43 43 H 1.08002 * 119.47086 * 179.86679 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 1 0.7884 -5.0068 -0.8432 13 7 0.7281 -5.1189 1.2537 14 6 2.4549 -6.1297 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9583 -6.4585 -1.3313 17 6 3.9061 -7.5690 -1.4516 18 1 3.6117 -8.3549 -0.7560 19 6 3.8334 -8.1192 -2.8654 20 6 4.7961 -9.3088 -2.9879 21 16 6.4842 -8.6391 -2.9978 22 6 6.4508 -7.4891 -1.6597 23 6 7.6711 -6.9838 -1.2069 24 6 7.7136 -6.0727 -0.1747 25 6 6.5336 -5.6526 0.4126 26 6 5.3283 -6.1539 -0.0276 27 6 5.2713 -7.0787 -1.0683 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6044 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 1.3477 -5.1033 2.0500 34 1 0.0233 -4.4008 1.3300 35 1 2.6929 -5.9598 -2.1198 36 1 4.1209 -7.3426 -3.5743 37 1 2.8167 -8.4492 -3.0783 38 1 4.6050 -9.8463 -3.9168 39 1 4.6679 -9.9787 -2.1378 40 1 8.5902 -7.3101 -1.6705 41 1 8.6613 -5.6888 0.1733 42 1 6.5577 -4.9351 1.2195 43 1 4.4125 -5.8215 0.4386 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:30 Heat of formation + Delta-G solvation = -17.706621 kcal Electronic energy + Delta-G solvation = -24732.295502 eV Core-core repulsion = 21288.790352 eV Total energy + Delta-G solvation = -3443.505150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67221 -38.80931 -36.56190 -35.45776 -33.08254 -32.87104 -30.88673 -30.84016 -29.94344 -27.46482 -25.79700 -23.74307 -23.38272 -22.74101 -20.97062 -20.70092 -19.84715 -18.02380 -17.43253 -16.67727 -16.26438 -16.10132 -15.75329 -15.06635 -14.91831 -14.70562 -14.48647 -14.21065 -13.80450 -13.59231 -13.38317 -13.29780 -13.14704 -12.88803 -12.73921 -12.46967 -12.19931 -11.79651 -11.65246 -11.42502 -11.11073 -10.98616 -10.93087 -10.71789 -10.29556 -10.04607 -10.00454 -9.78310 -9.36653 -9.27545 -9.21068 -8.82011 -8.47255 -8.26419 -7.58202 -6.11703 -4.14924 1.07808 1.29183 1.35902 2.12489 2.74795 3.05217 3.25099 3.32118 3.35282 3.66983 4.21625 4.36736 4.37615 4.48901 4.76308 4.84023 4.90181 5.04492 5.10852 5.17436 5.21192 5.24679 5.29721 5.39934 5.49943 5.54071 5.62564 5.67635 5.75813 5.91960 6.16591 6.22175 6.27719 6.41766 6.44515 6.56861 6.81043 6.86129 7.32991 7.46786 7.54018 7.59814 7.83056 7.85395 8.26567 8.29892 8.90926 9.50326 10.99157 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.003351 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.971620 B = 8353.433901 C = 9165.123738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.138 4.138 11 C 0.074 3.926 12 H 0.098 0.902 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.530 6.530 16 N -0.727 5.727 17 C 0.186 3.814 18 H 0.097 0.903 19 C -0.130 4.130 20 C -0.099 4.099 21 S -0.130 6.130 22 C -0.071 4.071 23 C -0.109 4.109 24 C -0.103 4.103 25 C -0.121 4.121 26 C -0.093 4.093 27 C -0.099 4.099 28 H 0.262 0.738 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.345 0.655 34 H 0.355 0.645 35 H 0.405 0.595 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 -17.556 -6.067 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.041 4.041 12 H 0.116 0.884 13 N -0.362 5.362 14 C 0.315 3.685 15 O -0.407 6.407 16 N -0.380 5.380 17 C 0.080 3.920 18 H 0.115 0.885 19 C -0.170 4.170 20 C -0.248 4.248 21 S 0.112 5.888 22 C -0.184 4.184 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.142 4.142 26 C -0.112 4.112 27 C -0.106 4.106 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.240 0.760 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.135 0.865 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.956 -18.990 -6.440 22.850 hybrid contribution -0.190 2.600 0.683 2.695 sum 10.766 -16.390 -5.757 20.437 Atomic orbital electron populations 1.69948 1.06017 1.26817 1.50396 1.25001 0.94862 0.99303 0.95082 0.86592 0.79880 0.83364 0.78188 1.20590 1.21128 1.19864 1.21165 0.93017 0.90859 1.51187 0.92718 1.19095 0.93664 0.91072 0.97370 1.22401 0.99919 0.93924 1.01531 1.21497 0.94682 0.92085 0.95824 0.88412 1.58751 1.18427 1.55964 1.03096 1.20959 0.80668 0.84445 0.82478 1.90661 1.60031 1.53002 1.36972 1.46119 1.46172 1.35079 1.10596 1.19374 0.85683 0.89689 0.97207 0.88482 1.21862 1.01054 0.97619 0.96417 1.23692 0.93914 1.00107 1.07112 1.85465 1.17385 1.47080 1.38899 1.21253 0.95485 1.01755 0.99911 1.20804 0.95788 0.98734 0.97834 1.21068 0.98480 0.96835 0.95847 1.21184 0.92478 1.00127 1.00365 1.21903 0.99691 0.94909 0.94723 1.19927 0.93217 0.99298 0.98172 0.92859 0.96322 0.96384 0.92664 0.92463 0.84131 0.82908 0.76012 0.89408 0.88834 0.86488 0.88712 0.85732 0.85545 0.85703 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 11 C 0.07 1.19 3.21 -68.87 -0.22 0.97 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 N -0.83 -13.59 8.94 -5.66 -0.05 -13.64 16 14 C 0.53 8.02 5.24 -10.99 -0.06 7.96 16 15 O -0.53 -9.48 13.93 5.55 0.08 -9.40 16 16 N -0.73 -8.83 4.77 -55.81 -0.27 -9.09 16 17 C 0.19 2.12 2.36 -69.97 -0.16 1.96 16 18 H 0.10 1.24 7.59 -51.92 -0.39 0.85 16 19 C -0.13 -1.06 5.23 -27.03 -0.14 -1.20 16 20 C -0.10 -0.75 6.52 37.43 0.24 -0.50 16 21 S -0.13 -1.31 21.99 -107.50 -2.36 -3.68 16 22 C -0.07 -0.88 6.05 -39.09 -0.24 -1.12 16 23 C -0.11 -1.28 9.65 -39.25 -0.38 -1.66 16 24 C -0.10 -1.20 10.06 -39.72 -0.40 -1.60 16 25 C -0.12 -1.63 10.03 -39.72 -0.40 -2.03 16 26 C -0.09 -1.38 8.71 -39.35 -0.34 -1.72 16 27 C -0.10 -1.31 5.63 -104.55 -0.59 -1.90 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.35 5.73 8.58 -39.29 -0.34 5.39 16 34 H 0.36 5.88 7.55 -39.29 -0.30 5.58 16 35 H 0.40 4.16 8.57 -40.82 -0.35 3.81 16 36 H 0.09 0.73 8.03 -51.92 -0.42 0.31 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.12 1.24 8.05 -52.49 -0.42 0.82 16 41 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.14 2.32 3.83 -52.49 -0.20 2.12 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -31.08 358.72 -10.96 -42.04 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.12 Total: 13.27 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -3.36 Total: -16.02 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.42 Total: -47.69 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.36 Total: -3.68 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.08 -10.96 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.334 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds