Wall clock time and date at job start Tue Mar 31 2020 12:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46650 * 2 1 4 4 C 1.50694 * 109.47186 * 120.00449 * 2 1 3 5 5 H 1.07996 * 120.00130 * 119.99828 * 4 2 1 6 6 C 1.37877 * 120.00175 * 299.99986 * 4 2 1 7 7 N 1.31519 * 119.99698 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00270 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47217 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46963 * 120.00022 * 8 6 4 11 11 H 1.48496 * 109.47289 * 240.00049 * 8 6 4 12 12 N 1.46501 * 109.47068 * 240.00441 * 2 1 3 13 13 C 1.34780 * 120.00006 * 84.99971 * 12 2 1 14 14 O 1.21841 * 120.00152 * 359.97438 * 13 12 2 15 15 N 1.33828 * 120.00103 * 179.97438 * 13 12 2 16 16 C 1.32939 * 120.00263 * 179.97438 * 15 13 12 17 17 C 1.41205 * 126.37409 * 359.97438 * 16 15 13 18 18 C 1.34964 * 108.24132 * 180.02562 * 17 16 15 19 19 N 1.36453 * 108.94829 * 0.02562 * 18 17 16 20 20 C 1.46495 * 125.85252 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47516 * 85.02084 * 20 19 18 22 22 C 1.53002 * 109.47334 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.46878 * 60.00199 * 22 21 20 24 24 F 1.39901 * 109.46937 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.46920 * 300.00413 * 22 21 20 26 26 N 1.37418 * 126.38306 * 180.02562 * 16 15 13 27 27 H 0.97005 * 126.35836 * 359.96579 * 26 16 15 28 28 H 1.09004 * 109.47110 * 59.99697 * 1 2 3 29 29 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47234 * 299.99535 * 1 2 3 31 31 H 0.96998 * 119.99557 * 180.02562 * 7 6 4 32 32 H 0.96996 * 119.99974 * 264.99928 * 12 2 1 33 33 H 1.08002 * 125.88082 * 0.05500 * 17 16 15 34 34 H 1.07999 * 125.52317 * 179.74257 * 18 17 16 35 35 H 1.08997 * 109.46982 * 205.02317 * 20 19 18 36 36 H 1.09004 * 109.47194 * 325.01878 * 20 19 18 37 37 H 1.08998 * 109.46981 * 300.00620 * 21 20 19 38 38 H 1.08998 * 109.46631 * 59.99848 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1465 -2.2872 3.6036 10 1 3.1466 -0.1877 4.8164 11 1 1.1661 -1.5870 4.8159 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3572 14 8 1.8569 1.1640 -2.4119 15 7 2.5936 -0.6487 -3.4498 16 6 2.7201 0.0144 -4.5951 17 6 2.4237 1.3781 -4.8103 18 6 2.6841 1.6683 -6.1024 19 7 3.1364 0.5425 -6.7268 20 6 3.5275 0.4406 -8.1349 21 6 4.9862 0.8747 -8.2919 22 6 5.3948 0.7677 -9.7625 23 9 4.5756 1.5975 -10.5355 24 9 6.7288 1.1640 -9.9058 25 9 5.2536 -0.5567 -10.1905 26 7 3.1627 -0.4998 -5.7901 27 1 3.4414 -1.4142 -5.9547 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 0.7088 1.1610 3.4844 32 1 2.2490 -1.6316 -1.1527 33 1 2.0529 2.0700 -4.0685 34 1 2.5513 2.6337 -6.5678 35 1 3.4174 -0.5911 -8.4689 36 1 2.8892 1.0874 -8.7370 37 1 5.0963 1.9063 -7.9579 38 1 5.6244 0.2279 -7.6899 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425695448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:45 Heat of formation + Delta-G solvation = -72.278847 kcal Electronic energy + Delta-G solvation = -25989.166515 eV Core-core repulsion = 21455.144981 eV Total energy + Delta-G solvation = -4534.021534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.76716 -48.25343 -48.24733 -41.38808 -38.62045 -35.78277 -34.60364 -32.89525 -32.10095 -31.55168 -30.04278 -28.38010 -25.76147 -25.07623 -23.23544 -22.41429 -21.87436 -20.60567 -19.46304 -19.22322 -18.96325 -18.27710 -17.69640 -16.86868 -15.89461 -15.51183 -15.44131 -15.37337 -15.07319 -14.97945 -14.68235 -14.61557 -14.49407 -14.37331 -14.34316 -14.05583 -13.70292 -13.24747 -13.13848 -12.84569 -12.56360 -12.30827 -12.18930 -11.55407 -10.95324 -10.88851 -10.64956 -10.41134 -10.13877 -10.07111 -9.64694 -9.58283 -8.83982 -8.44488 -8.28929 -7.73991 -7.15894 -5.97782 -4.04952 1.10660 1.22604 2.09682 2.83356 3.05241 3.21818 3.31829 3.33302 3.40280 3.44468 3.50407 3.95351 3.99203 4.35760 4.38371 4.49164 4.59723 4.68687 4.85537 4.86268 5.34245 5.38347 5.51578 6.04669 6.24585 6.78316 7.01199 7.10653 7.21207 7.33314 7.40188 7.74567 7.87900 7.96682 8.16635 8.23103 8.36929 8.97179 9.16366 9.57720 9.94645 11.08566 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.035583 B = 0.002027 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.709697 B =13808.767485 C =14091.436844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.276 3.724 3 H 0.046 0.954 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.697 5.697 13 C 0.673 3.327 14 O -0.626 6.626 15 N -0.669 5.669 16 C 0.488 3.512 17 C -0.273 4.273 18 C 0.124 3.876 19 N -0.405 5.405 20 C 0.143 3.857 21 C -0.197 4.197 22 C 0.460 3.540 23 F -0.181 7.181 24 F -0.179 7.179 25 F -0.182 7.182 26 N -0.495 5.495 27 H 0.444 0.556 28 H 0.014 0.986 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.262 0.738 32 H 0.389 0.611 33 H 0.194 0.806 34 H 0.189 0.811 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 0.497 -29.367 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.173 3.827 3 H 0.064 0.936 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.345 5.345 13 C 0.371 3.629 14 O -0.508 6.508 15 N -0.424 5.424 16 C 0.226 3.774 17 C -0.305 4.305 18 C -0.008 4.008 19 N -0.199 5.199 20 C 0.020 3.980 21 C -0.237 4.237 22 C 0.405 3.595 23 F -0.162 7.162 24 F -0.160 7.160 25 F -0.163 7.163 26 N -0.226 5.226 27 H 0.291 0.709 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.221 0.779 33 H 0.211 0.789 34 H 0.206 0.794 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.698 0.553 -29.176 30.180 hybrid contribution 0.563 -0.729 0.478 1.038 sum 8.260 -0.176 -28.698 29.864 Atomic orbital electron populations 1.22075 0.98799 0.98909 1.00629 1.18622 0.90722 0.93769 0.79541 0.93566 1.21320 1.31799 1.12984 0.90376 0.92063 1.24890 0.95008 0.95054 0.98958 1.69933 1.36313 1.22678 1.23478 0.86400 0.78525 0.79539 0.82660 1.19768 1.20999 1.20980 1.45505 1.66798 1.13423 1.08736 1.16725 0.78542 0.84196 0.83400 1.90682 1.57101 1.17067 1.85954 1.68244 1.37087 1.39087 0.97988 1.18794 0.84900 0.88848 0.84829 1.22928 1.13074 0.97641 0.96812 1.22691 0.94739 0.89746 0.93613 1.45970 1.66047 1.03070 1.04827 1.21562 0.93245 1.05428 0.77730 1.23527 1.00548 1.08680 0.90903 1.20288 0.75149 0.73741 0.90316 1.93217 1.72476 1.72269 1.78281 1.93232 1.35513 1.90690 1.96597 1.93216 1.95455 1.35914 1.91764 1.44051 1.68576 1.06604 1.03336 0.70850 0.96710 0.95684 0.89343 0.92835 0.77853 0.78903 0.79366 0.87819 0.86679 0.85921 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.26 37.16 0.34 -3.59 16 2 C 0.28 7.73 2.56 -69.08 -0.18 7.56 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -15.03 8.73 -34.44 -0.30 -15.33 16 5 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.70 -17.34 5.07 -60.01 -0.30 -17.64 16 13 C 0.67 16.27 8.44 -87.76 -0.74 15.53 16 14 O -0.63 -16.29 12.92 5.06 0.07 -16.23 16 15 N -0.67 -13.44 10.59 -15.79 -0.17 -13.60 16 16 C 0.49 7.71 8.07 -155.29 -1.25 6.45 16 17 C -0.27 -3.92 9.52 -39.62 -0.38 -4.29 16 18 C 0.12 1.02 11.45 -16.66 -0.19 0.83 16 19 N -0.40 -2.74 3.65 -61.07 -0.22 -2.97 16 20 C 0.14 0.38 6.20 -4.04 -0.03 0.36 16 21 C -0.20 -0.48 5.58 -26.73 -0.15 -0.63 16 22 C 0.46 1.86 3.16 37.16 0.12 1.97 16 23 F -0.18 -0.84 16.80 2.25 0.04 -0.80 16 24 F -0.18 -1.05 17.32 2.25 0.04 -1.02 16 25 F -0.18 -0.91 16.80 2.25 0.04 -0.88 16 26 N -0.49 -4.92 7.38 31.33 0.23 -4.68 16 27 H 0.44 3.33 8.96 -182.55 -1.64 1.69 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.39 8.96 8.64 -40.82 -0.35 8.61 16 33 H 0.19 3.43 5.77 -52.49 -0.30 3.12 16 34 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.10 0.18 7.80 -51.93 -0.41 -0.22 16 36 H 0.12 0.11 7.80 -51.93 -0.41 -0.30 16 37 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -37.36 340.27 -7.86 -45.22 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.47 Total: 5.75 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -2.85 Total: 10.55 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 0.16 Total: -64.38 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.07 Total: -16.23 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.11 Total: -2.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.36 -7.86 -45.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425695448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.055 kcal (2) G-P(sol) polarization free energy of solvation -37.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds