Wall clock time and date at job start Tue Mar 31 2020 13:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00472 * 2 1 4 4 C 1.50696 * 109.47206 * 270.00311 * 3 2 1 5 5 N 1.30498 * 125.65039 * 270.02103 * 4 3 2 6 6 C 1.34129 * 109.25671 * 179.73373 * 5 4 3 7 7 C 1.34666 * 108.02165 * 0.40230 * 6 5 4 8 8 N 1.35047 * 125.65399 * 89.99641 * 4 3 2 9 9 C 1.46507 * 126.39328 * 0.02641 * 8 4 3 10 10 C 1.52992 * 109.47505 * 85.01935 * 9 8 4 11 11 F 1.39899 * 109.47348 * 59.99730 * 10 9 8 12 12 F 1.39893 * 109.47176 * 180.02562 * 10 9 8 13 13 F 1.39908 * 109.47280 * 300.00029 * 10 9 8 14 14 C 1.34777 * 119.99487 * 180.02562 * 2 1 3 15 15 O 1.21599 * 119.99800 * 179.97438 * 14 2 1 16 16 N 1.34774 * 120.00352 * 359.97438 * 14 2 1 17 17 C 1.46501 * 120.00093 * 180.02562 * 16 14 2 18 18 C 1.50693 * 109.47225 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00368 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00214 * 179.97438 * 18 17 16 21 21 N 1.31521 * 120.00175 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00070 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47294 * 89.99734 * 22 20 18 24 24 H 1.48493 * 109.47386 * 209.99700 * 22 20 18 25 25 H 1.48496 * 109.47285 * 330.00178 * 22 20 18 26 26 H 1.09000 * 109.47365 * 89.99106 * 1 2 3 27 27 H 1.08996 * 109.47834 * 209.99825 * 1 2 3 28 28 H 1.09007 * 109.46863 * 329.99785 * 1 2 3 29 29 H 1.09001 * 109.47072 * 149.99731 * 3 2 1 30 30 H 1.09000 * 109.46671 * 30.00246 * 3 2 1 31 31 H 1.08003 * 125.99108 * 180.25065 * 6 5 4 32 32 H 1.08002 * 126.59556 * 179.87817 * 7 6 5 33 33 H 1.09000 * 109.46583 * 205.02344 * 9 8 4 34 34 H 1.09008 * 109.46472 * 325.01713 * 9 8 4 35 35 H 0.96999 * 120.00104 * 359.97438 * 16 14 2 36 36 H 1.09009 * 109.46749 * 299.99518 * 17 16 14 37 37 H 1.08994 * 109.47541 * 59.99573 * 17 16 14 38 38 H 0.96999 * 120.00274 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 7 3.4936 1.3927 -2.1380 6 6 3.3775 1.9488 -3.3531 7 6 2.2209 2.6377 -3.3872 8 7 1.6296 2.4797 -2.1629 9 6 0.3476 3.0467 -1.7369 10 6 0.5927 4.3636 -0.9978 11 9 1.2402 5.2637 -1.8508 12 9 -0.6314 4.9046 -0.5905 13 9 1.3936 4.1264 0.1246 14 6 2.1387 -1.1673 -0.0005 15 8 3.3547 -1.1673 -0.0010 16 7 1.4648 -2.3344 -0.0005 17 6 2.1973 -3.6032 -0.0005 18 6 1.2180 -4.7486 0.0001 19 1 0.1562 -4.5512 0.0009 20 6 1.6775 -6.0485 -0.0003 21 7 0.8228 -7.0481 0.0008 22 14 3.5140 -6.3899 -0.0024 23 1 4.0023 -6.4803 1.3971 24 1 3.7782 -7.6725 -0.7025 25 1 4.2215 -5.2885 -0.7033 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 3.1500 1.1383 0.5139 30 1 1.6085 2.0283 0.5139 31 1 4.0883 1.8617 -4.1615 32 1 1.8321 3.2023 -4.2218 33 1 -0.2764 3.2314 -2.6113 34 1 -0.1568 2.3453 -1.0722 35 1 0.4948 -2.3344 0.0002 36 1 2.8239 -3.6609 -0.8906 37 1 2.8240 -3.6610 0.8894 38 1 1.1461 -7.9627 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426424041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:36 Heat of formation + Delta-G solvation = -100.013565 kcal Electronic energy + Delta-G solvation = -27640.343170 eV Core-core repulsion = 23105.118969 eV Total energy + Delta-G solvation = -4535.224201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.71279 -48.23561 -48.18419 -42.34892 -39.52955 -35.56711 -34.93089 -34.30233 -32.39137 -30.77958 -29.57940 -27.95434 -27.27331 -25.46752 -24.30651 -22.06501 -21.65839 -20.52644 -19.54621 -19.12178 -19.05209 -18.57591 -18.03781 -17.06545 -16.37258 -16.10708 -15.55228 -15.24755 -15.04829 -14.96238 -14.65392 -14.59204 -14.38735 -14.31951 -14.26932 -14.06874 -13.64044 -13.51457 -13.46261 -13.11784 -12.94078 -12.77802 -12.44082 -12.31780 -12.06685 -11.82116 -10.94618 -10.72612 -10.04915 -9.97598 -9.92451 -9.54881 -9.43015 -8.78008 -8.73400 -8.56748 -8.00842 -6.18832 -4.20609 1.43667 1.97685 2.26370 2.80508 3.06989 3.22475 3.30858 3.35483 3.39468 3.48482 3.58592 3.75895 4.05602 4.27330 4.32656 4.37419 4.43856 4.61585 4.92661 4.98754 5.17173 5.23636 5.30263 5.45810 5.53414 5.69902 5.90364 6.46000 6.54147 6.75435 6.80823 7.15465 7.23145 7.38133 7.48538 7.99560 8.26906 8.66306 8.80860 9.20712 9.42992 10.93054 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.003112 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.346880 B = 8996.406334 C = 9517.000125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.638 5.638 3 C 0.213 3.787 4 C 0.206 3.794 5 N -0.450 5.450 6 C -0.018 4.018 7 C -0.055 4.055 8 N -0.465 5.465 9 C 0.063 3.937 10 C 0.440 3.560 11 F -0.174 7.174 12 F -0.173 7.173 13 F -0.173 7.173 14 C 0.696 3.304 15 O -0.578 6.578 16 N -0.721 5.721 17 C 0.238 3.762 18 C -0.542 4.542 19 H 0.078 0.922 20 C 0.078 3.922 21 N -0.894 5.894 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.259 1.259 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.173 0.827 32 H 0.178 0.822 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.391 0.609 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 25.928 -4.066 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.377 5.377 3 C 0.087 3.913 4 C -0.057 4.057 5 N -0.167 5.167 6 C -0.165 4.165 7 C -0.185 4.185 8 N -0.152 5.152 9 C -0.064 4.064 10 C 0.384 3.616 11 F -0.156 7.156 12 F -0.155 7.155 13 F -0.154 7.154 14 C 0.397 3.603 15 O -0.455 6.455 16 N -0.375 5.375 17 C 0.115 3.885 18 C -0.580 4.580 19 H 0.096 0.904 20 C -0.126 4.126 21 N -0.532 5.532 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.183 1.183 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.191 0.809 32 H 0.195 0.805 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.225 0.775 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.016 25.227 -3.758 25.820 hybrid contribution -0.474 0.479 -0.422 0.795 sum -4.490 25.706 -4.180 26.428 Atomic orbital electron populations 1.21796 0.80416 1.03367 1.01321 1.47071 1.05746 1.04660 1.80265 1.19612 1.00333 0.84596 0.86750 1.24191 0.87967 0.95994 0.97559 1.70484 1.21399 1.21179 1.03619 1.22456 0.97598 1.00063 0.96393 1.22731 0.97986 1.08658 0.89131 1.45175 1.16718 1.40293 1.12997 1.22989 0.87265 0.92232 1.03879 1.20844 0.74632 0.87582 0.78508 1.93237 1.81897 1.70372 1.70075 1.93237 1.43622 1.87561 1.91040 1.93218 1.74280 1.94147 1.53755 1.16041 0.85574 0.80323 0.78334 1.90925 1.11327 1.85833 1.57378 1.45530 1.09767 1.04927 1.77264 1.19371 0.92880 0.79490 0.96739 1.21074 0.94295 0.89385 1.53197 0.90430 1.24771 0.98197 0.95762 0.93844 1.69881 1.34442 0.99189 1.49644 0.86816 0.85483 0.78340 0.79103 1.19820 1.20964 1.18310 0.93242 0.90137 0.91410 0.86300 0.89100 0.80945 0.80475 0.84226 0.84731 0.77454 0.95851 0.96285 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 9.14 59.84 0.55 1.28 16 2 N -0.64 -9.25 2.86 -188.74 -0.54 -9.79 16 3 C 0.21 2.79 5.48 -5.19 -0.03 2.76 16 4 C 0.21 2.83 7.13 -155.42 -1.11 1.72 16 5 N -0.45 -7.50 11.25 -10.82 -0.12 -7.62 16 6 C -0.02 -0.23 11.87 -17.81 -0.21 -0.44 16 7 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16 8 N -0.46 -4.61 2.64 -113.90 -0.30 -4.91 16 9 C 0.06 0.36 5.69 -4.04 -0.02 0.33 16 10 C 0.44 3.04 3.29 37.15 0.12 3.16 16 11 F -0.17 -1.45 17.24 2.25 0.04 -1.41 16 12 F -0.17 -1.12 17.32 2.25 0.04 -1.08 16 13 F -0.17 -1.49 14.74 2.25 0.03 -1.46 16 14 C 0.70 14.07 8.28 -86.92 -0.72 13.35 16 15 O -0.58 -14.07 15.92 5.28 0.08 -13.98 16 16 N -0.72 -15.12 5.41 -66.41 -0.36 -15.48 16 17 C 0.24 6.02 4.50 -5.20 -0.02 5.99 16 18 C -0.54 -14.98 9.83 -34.44 -0.34 -15.32 16 19 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 22 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 26 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.08 0.82 6.36 -51.93 -0.33 0.49 16 28 H 0.07 0.42 7.36 -51.92 -0.38 0.03 16 29 H 0.12 1.81 7.42 -51.93 -0.39 1.43 16 30 H 0.09 0.85 5.47 -51.93 -0.28 0.57 16 31 H 0.17 1.81 8.06 -52.48 -0.42 1.38 16 32 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.14 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.13 0.58 6.12 -51.92 -0.32 0.26 16 35 H 0.39 7.14 6.05 -40.82 -0.25 6.89 16 36 H 0.02 0.64 7.20 -51.92 -0.37 0.26 16 37 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -37.11 333.89 -6.05 -43.15 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.98 Total: 2.06 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: -2.07 Total: 14.21 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.55 Total: -63.68 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.11 Total: -3.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.11 -6.05 -43.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426424041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.860 kcal (2) G-P(sol) polarization free energy of solvation -37.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds