Wall clock time and date at job start Tue Mar 31 2020 13:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34424 * 124.35275 * 2 1 4 4 O 1.21277 * 124.93647 * 0.46013 * 3 2 1 5 5 C 1.51278 * 110.11729 * 180.42359 * 3 2 1 6 6 C 1.54628 * 104.19659 * 16.25170 * 5 3 2 7 7 H 1.09002 * 110.96971 * 217.08346 * 6 5 3 8 8 C 1.50705 * 111.00093 * 93.33209 * 6 5 3 9 9 O 1.21280 * 119.99981 * 244.51196 * 8 6 5 10 10 N 1.34779 * 119.99843 * 64.51454 * 8 6 5 11 11 C 1.46502 * 120.00113 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.47072 * 180.02562 * 11 10 8 13 13 H 1.08001 * 120.00235 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99687 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00202 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99960 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46841 * 60.00044 * 16 14 12 18 18 H 1.48494 * 109.47292 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47281 * 300.00243 * 16 14 12 20 20 C 1.46770 * 124.34963 * 180.02562 * 2 1 3 21 21 H 1.09005 * 110.24126 * 43.96807 * 20 2 1 22 22 C 1.50696 * 110.24630 * 281.96997 * 20 2 1 23 23 C 1.38251 * 119.97490 * 323.67315 * 22 20 2 24 24 C 1.38197 * 120.02275 * 179.72665 * 23 22 20 25 25 C 1.38460 * 119.97542 * 0.57544 * 24 23 22 26 26 F 1.35102 * 120.02192 * 179.68420 * 25 24 23 27 27 C 1.38455 * 119.94765 * 359.69823 * 25 24 23 28 28 C 1.38201 * 119.97710 * 0.02562 * 27 25 24 29 29 H 1.08998 * 109.47592 * 269.98178 * 1 2 3 30 30 H 1.09000 * 109.47016 * 29.98521 * 1 2 3 31 31 H 1.09000 * 109.46810 * 149.97517 * 1 2 3 32 32 H 1.08995 * 110.48939 * 257.57237 * 5 3 2 33 33 H 1.08999 * 110.48546 * 134.93122 * 5 3 2 34 34 H 0.96999 * 119.99735 * 359.97438 * 10 8 6 35 35 H 1.08997 * 109.46975 * 300.00636 * 11 10 8 36 36 H 1.09000 * 109.46332 * 60.00179 * 11 10 8 37 37 H 0.97002 * 119.99753 * 180.02562 * 15 14 12 38 38 H 1.07999 * 119.98145 * 359.97438 * 23 22 20 39 39 H 1.07998 * 120.00781 * 180.29700 * 24 23 22 40 40 H 1.08001 * 120.01274 * 179.97438 * 27 25 24 41 41 H 1.07996 * 119.98825 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 0.0080 5 6 3.6898 0.7378 -0.0105 6 6 3.7009 -0.7487 -0.4363 7 1 4.4754 -1.3011 0.0958 8 6 3.8748 -0.8821 -1.9273 9 8 2.9872 -1.3608 -2.6009 10 7 5.0169 -0.4695 -2.5121 11 6 5.1863 -0.5997 -3.9615 12 6 6.5399 -0.0698 -4.3586 13 1 7.2075 0.3241 -3.6066 14 6 6.9261 -0.0879 -5.6821 15 7 6.1129 -0.5672 -6.5979 16 14 8.6038 0.5696 -6.1746 17 1 9.6628 -0.2070 -5.4812 18 1 8.7755 0.4375 -7.6437 19 1 8.7071 2.0003 -5.7903 20 6 2.2931 -1.2117 -0.0005 21 1 1.8982 -1.9381 -0.7109 22 6 2.3453 -1.8084 1.3823 23 6 2.3742 -0.9822 2.4904 24 6 2.4164 -1.5283 3.7592 25 6 2.4416 -2.9033 3.9200 26 9 2.4892 -3.4381 5.1598 27 6 2.4183 -3.7296 2.8093 28 6 2.3704 -3.1814 1.5416 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 4.1197 0.8528 0.9845 33 1 4.2325 1.3460 -0.7342 34 1 5.7267 -0.0864 -1.9734 35 1 5.1105 -1.6499 -4.2432 36 1 4.4089 -0.0300 -4.4706 37 1 6.3848 -0.5803 -7.5289 38 1 2.3599 0.0904 2.3644 39 1 2.4341 -0.8827 4.6248 40 1 2.4384 -4.8023 2.9336 41 1 2.3526 -3.8257 0.6752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427624345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:54 Heat of formation + Delta-G solvation = -89.926501 kcal Electronic energy + Delta-G solvation = -26609.807481 eV Core-core repulsion = 22596.957466 eV Total energy + Delta-G solvation = -4012.850015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.18176 -41.34722 -39.02626 -38.62165 -36.28109 -34.33149 -33.12484 -32.29322 -31.54541 -31.10107 -27.90528 -27.07146 -26.52088 -23.90313 -23.35179 -22.43222 -21.45453 -19.76381 -19.53393 -18.14671 -17.69895 -16.99839 -16.63527 -16.18968 -15.87869 -15.63477 -15.40488 -15.31818 -15.00143 -14.59731 -14.34475 -14.05269 -13.83737 -13.75863 -13.41491 -13.38408 -13.07500 -12.66405 -12.61192 -12.33324 -12.20592 -12.04331 -11.77324 -11.63107 -11.52259 -11.29111 -11.04029 -10.90952 -10.36742 -9.87677 -9.48257 -9.44683 -9.30348 -8.95471 -8.80562 -8.79246 -8.01973 -6.21728 -4.29287 0.74605 0.89747 2.51579 2.86837 3.08699 3.20395 3.22648 3.27929 3.29000 3.77056 3.94228 4.20780 4.26686 4.28773 4.43956 4.46061 4.57106 4.74250 4.93582 4.99716 5.12053 5.14836 5.22590 5.32727 5.37371 5.49299 5.53865 5.61327 5.65637 5.67679 5.72325 5.79082 5.91261 6.08677 6.45307 6.53347 6.99370 7.19974 7.27529 7.42788 7.57603 7.90019 8.09514 8.47341 8.67403 8.92803 9.37391 10.88321 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.003030 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.110733 B = 9239.627462 C = 9936.086520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.609 5.609 3 C 0.520 3.480 4 O -0.529 6.529 5 C -0.149 4.149 6 C -0.117 4.117 7 H 0.123 0.877 8 C 0.506 3.494 9 O -0.547 6.547 10 N -0.705 5.705 11 C 0.250 3.750 12 C -0.546 4.546 13 H 0.063 0.937 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.188 3.812 21 H 0.120 0.880 22 C -0.106 4.106 23 C -0.074 4.074 24 C -0.153 4.153 25 C 0.098 3.902 26 F -0.141 7.141 27 C -0.151 4.151 28 C -0.074 4.074 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.392 0.608 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 -4.289 20.454 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.342 5.342 3 C 0.308 3.692 4 O -0.406 6.406 5 C -0.190 4.190 6 C -0.139 4.139 7 H 0.141 0.859 8 C 0.290 3.710 9 O -0.426 6.426 10 N -0.353 5.353 11 C 0.130 3.870 12 C -0.584 4.584 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.083 3.917 21 H 0.137 0.863 22 C -0.107 4.107 23 C -0.092 4.092 24 C -0.171 4.171 25 C 0.078 3.922 26 F -0.120 7.120 27 C -0.170 4.170 28 C -0.092 4.092 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.225 0.775 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.239 -4.066 19.748 21.781 hybrid contribution 1.275 0.309 0.169 1.322 sum -6.965 -3.757 19.918 21.432 Atomic orbital electron populations 1.21533 0.77696 1.03528 1.01519 1.48067 1.06563 1.06475 1.73054 1.20792 0.89122 0.84359 0.74969 1.90727 1.78603 1.20912 1.50323 1.22433 0.95599 0.95641 1.05302 1.22379 0.97966 0.97371 0.96227 0.85900 1.19936 0.83371 0.79442 0.88283 1.90670 1.41421 1.45768 1.64772 1.46437 1.16182 1.60700 1.11954 1.19146 0.97007 0.97706 0.73147 1.21167 1.00740 1.43107 0.93430 0.91857 1.24943 0.97820 0.94946 0.96203 1.69958 1.36110 1.44467 1.01680 0.86468 0.83389 0.79476 0.77558 1.20023 1.21058 1.20002 1.20377 0.90279 0.87983 0.93050 0.86258 1.20192 1.01617 0.93731 0.95180 1.20849 0.97206 1.00222 0.90911 1.21130 1.03951 0.93229 0.98820 1.17766 1.02796 0.91910 0.79688 1.91504 1.93814 1.86735 1.39936 1.21146 1.03770 1.00532 0.91551 1.20931 0.97116 0.94159 0.97008 0.92738 0.90568 0.90750 0.86884 0.86845 0.77496 0.95346 0.95427 0.92322 0.85386 0.84708 0.84479 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 10.95 59.85 0.66 1.70 16 2 N -0.61 -7.59 2.43 -174.02 -0.42 -8.01 16 3 C 0.52 7.49 6.90 -10.86 -0.07 7.41 16 4 O -0.53 -9.49 17.59 5.56 0.10 -9.39 16 5 C -0.15 -1.73 5.89 -26.74 -0.16 -1.89 16 6 C -0.12 -1.41 3.05 -90.14 -0.28 -1.69 16 7 H 0.12 1.15 7.89 -51.93 -0.41 0.74 16 8 C 0.51 8.93 7.12 -10.98 -0.08 8.85 16 9 O -0.55 -11.77 15.51 5.56 0.09 -11.69 16 10 N -0.71 -13.55 5.36 -61.47 -0.33 -13.88 16 11 C 0.25 6.31 5.43 -5.20 -0.03 6.28 16 12 C -0.55 -14.27 9.28 -34.44 -0.32 -14.59 16 13 H 0.06 1.53 7.60 -52.49 -0.40 1.14 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 16 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.19 2.12 2.70 -68.16 -0.18 1.94 16 21 H 0.12 1.49 6.89 -51.93 -0.36 1.14 16 22 C -0.11 -0.98 4.89 -104.62 -0.51 -1.49 16 23 C -0.07 -0.65 9.04 -39.59 -0.36 -1.01 16 24 C -0.15 -1.30 10.03 -39.51 -0.40 -1.69 16 25 C 0.10 0.89 7.30 -39.42 -0.29 0.60 16 26 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 27 C -0.15 -1.24 10.03 -39.52 -0.40 -1.63 16 28 C -0.07 -0.61 9.68 -39.59 -0.38 -1.00 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.11 0.95 8.02 -51.93 -0.42 0.54 16 33 H 0.11 1.42 7.76 -51.93 -0.40 1.02 16 34 H 0.39 6.34 8.32 -40.82 -0.34 6.00 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.13 1.15 6.36 -52.49 -0.33 0.82 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -33.38 355.87 -7.51 -40.89 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.16 Total: 4.02 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.89 Total: 3.46 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.02 Total: -46.65 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.18 Total: -21.08 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.38 -7.51 -40.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427624345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.040 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds