Wall clock time and date at job start Tue Mar 31 2020 13:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00320 * 2 1 4 4 H 1.48506 * 109.47098 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47164 * 29.99862 * 3 2 1 6 6 H 1.48502 * 109.47391 * 150.00113 * 3 2 1 7 7 C 1.37875 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00029 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00251 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.34782 * 119.99743 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00044 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00118 * 179.97438 * 11 10 9 14 14 H 1.09003 * 109.47363 * 39.99790 * 13 11 10 15 15 C 1.50701 * 109.47174 * 280.00366 * 13 11 10 16 16 C 1.38241 * 119.99977 * 196.26918 * 15 13 11 17 17 C 1.38232 * 119.99813 * 179.76630 * 16 15 13 18 18 C 1.38237 * 120.00051 * 0.50407 * 17 16 15 19 19 C 1.38230 * 120.00211 * 359.74915 * 18 17 16 20 20 C 1.38230 * 120.00302 * 16.54093 * 15 13 11 21 21 N 1.46895 * 109.47472 * 160.00243 * 13 11 10 22 22 C 1.46467 * 110.99830 * 299.98678 * 21 13 11 23 23 C 1.53248 * 109.86153 * 197.76265 * 22 21 13 24 24 S 1.81899 * 108.50828 * 297.99796 * 23 22 21 25 25 C 1.81902 * 101.90973 * 51.30473 * 24 23 22 26 26 C 1.46463 * 110.99993 * 65.96695 * 21 13 11 27 27 H 0.97005 * 120.00051 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47091 * 59.99731 * 9 7 2 29 29 H 1.08996 * 109.46940 * 299.99952 * 9 7 2 30 30 H 0.96998 * 120.00321 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.99819 * 359.97438 * 16 15 13 32 32 H 1.08006 * 120.00018 * 180.23162 * 17 16 15 33 33 H 1.08000 * 119.99628 * 179.72173 * 18 17 16 34 34 H 1.07997 * 120.00263 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.99824 * 0.02562 * 20 15 13 36 36 H 1.09005 * 109.40627 * 77.64683 * 22 21 13 37 37 H 1.08995 * 109.34407 * 317.84740 * 22 21 13 38 38 H 1.09003 * 109.63192 * 178.29345 * 23 22 21 39 39 H 1.09002 * 109.62826 * 57.70510 * 23 22 21 40 40 H 1.08995 * 109.63453 * 68.40433 * 25 24 23 41 41 H 1.09007 * 109.62784 * 188.99193 * 25 24 23 42 42 H 1.08997 * 109.41096 * 282.35488 * 26 21 13 43 43 H 1.09000 * 109.40618 * 42.19902 * 26 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5753 -0.0010 11 6 5.3248 -2.8217 -0.0020 12 8 6.1130 -1.8999 -0.0025 13 6 5.8271 -4.2425 -0.0013 14 1 5.2054 -4.8480 -0.6608 15 6 5.7631 -4.7972 1.3985 16 6 6.4688 -5.9412 1.7215 17 6 6.4140 -6.4473 3.0067 18 6 5.6451 -5.8154 3.9661 19 6 4.9353 -4.6744 3.6418 20 6 4.9944 -4.1654 2.3579 21 7 7.2170 -4.2708 -0.4761 22 6 7.3177 -3.7380 -1.8367 23 6 8.6445 -4.1721 -2.4689 24 16 10.0075 -3.4752 -1.4865 25 6 9.5595 -3.9941 0.1984 26 6 8.1067 -3.5845 0.4634 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6805 0.8888 29 1 3.8744 -0.6801 -0.8911 30 1 3.3694 -3.3126 -0.0002 31 1 7.0657 -6.4376 0.9706 32 1 6.9683 -7.3389 3.2601 33 1 5.5987 -6.2134 4.9690 34 1 4.3344 -4.1810 4.3912 35 1 4.4392 -3.2743 2.1043 36 1 7.2712 -2.6494 -1.8038 37 1 6.4898 -4.1178 -2.4354 38 1 8.7022 -3.7992 -3.4915 39 1 8.7117 -5.2600 -2.4685 40 1 9.6567 -5.0762 0.2864 41 1 10.2151 -3.5049 0.9188 42 1 8.0055 -2.5067 0.3366 43 1 7.8353 -3.8562 1.4835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427637053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:45 Heat of formation + Delta-G solvation = 4.640760 kcal Electronic energy + Delta-G solvation = -25396.160901 eV Core-core repulsion = 21953.624806 eV Total energy + Delta-G solvation = -3442.536095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73207 -38.56005 -37.21298 -34.43107 -32.98340 -32.28363 -31.58551 -30.85706 -29.51489 -28.25816 -25.65927 -23.67110 -22.87235 -22.20692 -21.54291 -20.88501 -19.84836 -17.68685 -17.11000 -16.83584 -16.15865 -15.90176 -15.49861 -15.04828 -14.83950 -14.60996 -14.53422 -14.21357 -14.02019 -13.71513 -13.36184 -13.28038 -13.10146 -12.74399 -12.53875 -12.45807 -12.36531 -12.14680 -11.97831 -11.57083 -11.13380 -11.04557 -10.97266 -10.80937 -10.72494 -10.08922 -9.97528 -9.74391 -9.56902 -8.90656 -8.85349 -8.74140 -8.30266 -8.19392 -7.68781 -6.28169 -4.31228 1.27564 1.41600 1.75535 2.48519 2.94694 3.20896 3.28102 3.35404 3.55781 3.74527 3.88043 4.26673 4.60435 4.78511 4.87247 4.95719 5.01581 5.07065 5.08501 5.11839 5.17038 5.19428 5.26440 5.32693 5.43251 5.54171 5.59168 5.63167 5.73556 5.92807 5.96251 6.05982 6.19623 6.43977 6.49412 6.53502 6.68558 6.77614 6.91583 6.95594 6.99214 7.07969 7.28731 8.00127 8.37826 8.63712 8.76093 9.31321 10.83632 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.004612 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.122383 B = 6069.756192 C = 7866.393233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.701 5.701 11 C 0.478 3.522 12 O -0.547 6.547 13 C 0.110 3.890 14 H 0.113 0.887 15 C -0.078 4.078 16 C -0.090 4.090 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.113 4.113 21 N -0.518 5.518 22 C 0.043 3.957 23 C -0.067 4.067 24 S -0.280 6.280 25 C -0.068 4.068 26 C 0.039 3.961 27 H 0.268 0.732 28 H 0.025 0.975 29 H 0.020 0.980 30 H 0.398 0.602 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.092 -13.768 2.331 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.350 5.350 11 C 0.261 3.739 12 O -0.427 6.427 13 C -0.002 4.002 14 H 0.131 0.869 15 C -0.079 4.079 16 C -0.109 4.109 17 C -0.146 4.146 18 C -0.137 4.137 19 C -0.135 4.135 20 C -0.132 4.132 21 N -0.241 5.241 22 C -0.086 4.086 23 C -0.216 4.216 24 S -0.054 6.054 25 C -0.217 4.217 26 C -0.090 4.090 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.232 0.768 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.525 -12.842 1.939 21.018 hybrid contribution -1.388 0.676 0.398 1.594 sum 15.137 -12.166 2.337 19.560 Atomic orbital electron populations 1.69873 1.06206 1.27484 1.49138 1.24779 0.94760 0.99104 0.93797 0.86844 0.80542 0.83366 0.79080 1.19839 1.20831 1.18606 1.21061 0.88388 0.95242 1.53626 0.90203 1.19510 0.95400 0.78546 0.96781 1.46448 1.05772 1.11269 1.71474 1.21445 0.83594 0.91496 0.77379 1.90622 1.54931 1.46172 1.50933 1.20729 0.90704 0.93493 0.95264 0.86895 1.19340 0.98938 0.96253 0.93392 1.20951 0.98298 0.95114 0.96521 1.21118 0.99844 1.00195 0.93448 1.21181 0.97243 0.95937 0.99338 1.21147 0.99473 0.96393 0.96452 1.21485 0.98334 1.00197 0.93168 1.61618 1.04289 1.55848 1.02390 1.22348 0.96726 1.00553 0.88982 1.23436 0.94214 1.03469 1.00485 1.86846 1.36797 1.75515 1.06249 1.23496 0.99372 1.04105 0.94716 1.22507 0.89704 1.00261 0.96491 0.92192 0.95713 0.96163 0.76822 0.85286 0.86187 0.86287 0.85873 0.84848 0.91086 0.89995 0.87649 0.89278 0.89583 0.87883 0.89591 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.55 -14.43 9.83 -34.44 -0.34 -14.77 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.79 16 9 C 0.22 5.15 4.50 -5.19 -0.02 5.13 16 10 N -0.70 -13.21 4.30 -61.48 -0.26 -13.48 16 11 C 0.48 8.33 4.99 -10.98 -0.05 8.28 16 12 O -0.55 -11.28 12.40 5.56 0.07 -11.21 16 13 C 0.11 1.47 2.54 -70.02 -0.18 1.30 16 14 H 0.11 1.34 8.07 -51.93 -0.42 0.92 16 15 C -0.08 -1.01 3.97 -104.62 -0.42 -1.42 16 16 C -0.09 -1.00 8.43 -39.58 -0.33 -1.33 16 17 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 18 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 19 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 20 C -0.11 -1.60 9.12 -39.58 -0.36 -1.96 16 21 N -0.52 -6.51 3.88 -229.85 -0.89 -7.40 16 22 C 0.04 0.54 4.71 -3.93 -0.02 0.53 16 23 C -0.07 -0.73 6.69 37.29 0.25 -0.48 16 24 S -0.28 -3.51 22.40 -107.50 -2.41 -5.92 16 25 C -0.07 -0.77 6.69 37.29 0.25 -0.53 16 26 C 0.04 0.52 4.33 -3.93 -0.02 0.51 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 29 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 30 H 0.40 6.76 8.32 -40.82 -0.34 6.42 16 31 H 0.13 1.30 7.84 -52.49 -0.41 0.89 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.13 2.17 5.76 -52.48 -0.30 1.87 16 36 H 0.07 1.13 6.47 -51.93 -0.34 0.79 16 37 H 0.08 0.94 7.91 -51.93 -0.41 0.53 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 42 H 0.09 1.45 5.75 -51.93 -0.30 1.15 16 43 H 0.08 1.15 5.82 -51.93 -0.30 0.85 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -30.11 350.15 -10.77 -40.88 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.12 Total: 8.43 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.53 Total: -7.83 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.38 Total: -46.01 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.41 Total: -5.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.11 -10.77 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427637053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.524 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds