Wall clock time and date at job start Tue Mar 31 2020 12:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99938 * 2 1 4 4 N 1.34778 * 120.00130 * 179.97438 * 2 1 3 5 5 C 1.40066 * 120.00280 * 185.75935 * 4 2 1 6 6 C 1.38469 * 120.01033 * 33.34671 * 5 4 2 7 7 C 1.39571 * 119.80908 * 180.02562 * 6 5 4 8 8 C 1.47734 * 120.09027 * 180.02562 * 7 6 5 9 9 O 1.21574 * 120.00260 * 5.17962 * 8 7 6 10 10 N 1.34776 * 120.00364 * 185.17987 * 8 7 6 11 11 C 1.46490 * 120.00406 * 185.08737 * 10 8 7 12 12 C 1.53003 * 109.47313 * 184.99405 * 11 10 8 13 13 C 1.50695 * 115.54864 * 54.08079 * 12 11 10 14 14 H 1.08002 * 120.00476 * 215.57969 * 13 12 11 15 15 C 1.37885 * 119.99915 * 35.31432 * 13 12 11 16 16 N 1.31514 * 119.99800 * 355.87812 * 15 13 12 17 17 Si 1.86794 * 120.00048 * 175.88686 * 15 13 12 18 18 H 1.48498 * 109.47419 * 59.99531 * 17 15 13 19 19 H 1.48503 * 109.47142 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47077 * 299.99165 * 17 15 13 21 21 C 1.53001 * 117.49996 * 199.75198 * 12 11 10 22 22 C 1.53005 * 117.49858 * 268.41319 * 12 11 10 23 23 C 1.39661 * 119.81919 * 0.27061 * 7 6 5 24 24 C 1.37897 * 120.01043 * 359.47372 * 23 7 6 25 25 C 1.38503 * 120.19979 * 0.51036 * 24 23 7 26 26 F 1.35098 * 119.91364 * 179.74381 * 25 24 23 27 27 H 1.08997 * 109.47356 * 239.99944 * 1 2 3 28 28 H 1.08996 * 109.47078 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46867 * 120.00050 * 1 2 3 30 30 H 0.97004 * 119.99485 * 5.75756 * 4 2 1 31 31 H 1.08004 * 120.09462 * 0.04411 * 6 5 4 32 32 H 0.96998 * 119.99511 * 5.08948 * 10 8 7 33 33 H 1.09001 * 109.47100 * 64.99848 * 11 10 8 34 34 H 1.09000 * 109.47591 * 304.99394 * 11 10 8 35 35 H 0.97002 * 119.99774 * 184.99935 * 16 15 13 36 36 H 1.09000 * 117.49961 * 215.00261 * 21 12 11 37 37 H 1.09001 * 117.49948 * 0.02562 * 21 12 11 38 38 H 1.08994 * 117.49797 * 359.97438 * 22 12 11 39 39 H 1.09001 * 117.49289 * 144.97309 * 22 12 11 40 40 H 1.07994 * 119.99000 * 179.70350 * 23 7 6 41 41 H 1.08000 * 119.90170 * 180.24952 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5763 -1.1702 0.1222 6 6 4.2068 -0.2041 0.8881 7 6 5.5975 -0.2108 1.0060 8 6 6.2766 0.8167 1.8219 9 8 5.6210 1.6116 2.4672 10 7 7.6228 0.8728 1.8511 11 6 8.2975 1.8174 2.7447 12 6 9.8061 1.7673 2.4949 13 6 10.2358 1.9816 1.0665 14 1 11.0847 1.4434 0.6713 15 6 9.5418 2.8607 0.2623 16 7 8.4574 3.4507 0.7157 17 14 10.1417 3.2135 -1.4712 18 1 10.1632 1.9517 -2.2539 19 1 9.2270 4.1846 -2.1235 20 1 11.5114 3.7843 -1.4144 21 6 10.7228 2.3032 3.5964 22 6 10.6307 0.7965 3.3426 23 6 6.3457 -1.1884 0.3465 24 6 5.7098 -2.1501 -0.4099 25 6 4.3298 -2.1443 -0.5272 26 9 3.7131 -3.0862 -1.2739 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6995 -2.0052 -0.0834 31 1 3.6240 0.5522 1.3929 32 1 8.1450 0.2878 1.2802 33 1 8.0916 1.5478 3.7806 34 1 7.9306 2.8255 2.5519 35 1 7.9288 4.0123 0.1274 36 1 11.6367 2.8109 3.2879 37 1 10.2511 2.6912 4.4993 38 1 10.0985 0.1938 4.0785 39 1 11.4838 0.3126 2.8669 40 1 7.4223 -1.1932 0.4320 41 1 6.2899 -2.9077 -0.9159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431158803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:52 Heat of formation + Delta-G solvation = -82.162221 kcal Electronic energy + Delta-G solvation = -26663.378115 eV Core-core repulsion = 22650.864784 eV Total energy + Delta-G solvation = -4012.513330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.08021 -41.68124 -40.68221 -39.11682 -38.30786 -36.06060 -34.83162 -34.11996 -32.07698 -31.84552 -29.64740 -27.90363 -27.25128 -24.57858 -24.34431 -22.94762 -21.79226 -21.30364 -21.12459 -19.62465 -18.62473 -18.24958 -18.08500 -17.58509 -17.07694 -16.74151 -16.71144 -16.36814 -16.18216 -15.90556 -15.56372 -15.30596 -14.84780 -14.70327 -14.37471 -14.28980 -13.85832 -13.76131 -13.50330 -13.41205 -13.31828 -13.06137 -12.86652 -12.61608 -12.59512 -12.30922 -12.01437 -11.71856 -11.54678 -11.09598 -10.98562 -10.82273 -10.63826 -10.15189 -10.04381 -9.65511 -9.34588 -7.92774 -6.19642 -0.43294 0.02381 1.40231 1.42735 1.46136 1.52622 1.83254 1.89274 2.40587 2.45295 2.72756 2.93245 3.08272 3.57190 3.64149 3.72313 3.84385 3.99944 4.07327 4.28328 4.34364 4.48393 4.55775 4.61916 4.70952 4.75671 4.81286 4.82717 4.98826 4.99291 5.04180 5.13926 5.15448 5.23087 5.34526 5.54920 5.61601 5.69666 5.86282 5.99810 6.25422 6.37656 6.77616 6.93989 7.01526 7.46079 7.48320 8.91954 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.003618 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.635989 B = 7736.812569 C = 7799.466695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.499 3.501 3 O -0.576 6.576 4 N -0.661 5.661 5 C 0.102 3.898 6 C -0.061 4.061 7 C -0.130 4.130 8 C 0.541 3.459 9 O -0.599 6.599 10 N -0.665 5.665 11 C 0.174 3.826 12 C 0.007 3.993 13 C -0.503 4.503 14 H 0.064 0.936 15 C 0.034 3.966 16 N -0.891 5.891 17 Si 0.945 3.055 18 H -0.262 1.262 19 H -0.300 1.300 20 H -0.273 1.273 21 C -0.202 4.202 22 C -0.181 4.181 23 C -0.068 4.068 24 C -0.123 4.123 25 C 0.097 3.903 26 F -0.124 7.124 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.433 0.567 31 H 0.122 0.878 32 H 0.405 0.595 33 H 0.020 0.980 34 H 0.078 0.922 35 H 0.253 0.747 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.158 0.842 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 -16.855 -3.543 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.290 3.710 3 O -0.454 6.454 4 N -0.309 5.309 5 C 0.007 3.993 6 C -0.082 4.082 7 C -0.134 4.134 8 C 0.329 3.671 9 O -0.482 6.482 10 N -0.312 5.312 11 C 0.050 3.950 12 C 0.006 3.994 13 C -0.540 4.540 14 H 0.082 0.918 15 C -0.167 4.167 16 N -0.528 5.528 17 Si 0.772 3.228 18 H -0.187 1.187 19 H -0.226 1.226 20 H -0.199 1.199 21 C -0.240 4.240 22 C -0.218 4.218 23 C -0.087 4.087 24 C -0.141 4.141 25 C 0.075 3.925 26 F -0.102 7.102 27 H 0.139 0.861 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.273 0.727 31 H 0.140 0.860 32 H 0.242 0.758 33 H 0.038 0.962 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.176 0.824 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.674 -15.395 -3.128 20.184 hybrid contribution 0.275 0.259 -1.023 1.091 sum -12.399 -15.136 -4.151 20.002 Atomic orbital electron populations 1.21964 0.85712 1.06751 1.07333 1.22192 0.93153 0.82126 0.73546 1.90840 1.72015 1.33266 1.49295 1.43484 1.03437 1.11244 1.72770 1.17529 0.85080 0.97587 0.99135 1.20898 0.93625 0.97747 0.95979 1.19958 0.93876 0.97890 1.01667 1.18515 0.82892 0.84011 0.81714 1.90681 1.66268 1.43564 1.47727 1.45406 1.04709 1.38975 1.42090 1.20785 0.91546 0.94541 0.88140 1.19248 0.88729 0.99700 0.91737 1.20695 1.14539 1.23859 0.94930 0.91820 1.25610 0.94814 0.94931 1.01365 1.70064 1.15550 1.31405 1.35766 0.85804 0.77857 0.78296 0.80859 1.18686 1.22608 1.19880 1.22965 1.03078 0.96716 1.01275 1.22965 1.03553 0.91451 1.03857 1.21434 1.01324 0.91979 0.93978 1.21261 0.91516 1.00920 1.00431 1.17580 0.91082 0.89462 0.94365 1.91508 1.82980 1.62106 1.73654 0.86116 0.89003 0.85880 0.72710 0.86000 0.75825 0.96192 0.90460 0.93695 0.90441 0.90762 0.89521 0.89370 0.82415 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 10.32 71.24 0.74 -1.00 16 2 C 0.50 11.83 7.67 87.66 0.67 12.50 16 3 O -0.58 -21.41 14.80 -3.04 -0.05 -21.45 16 4 N -0.66 -13.48 5.24 -303.43 -1.59 -15.07 16 5 C 0.10 2.79 6.28 38.12 0.24 3.03 16 6 C -0.06 -2.19 8.20 22.65 0.19 -2.01 16 7 C -0.13 -4.76 5.87 -20.10 -0.12 -4.87 16 8 C 0.54 24.81 7.76 86.75 0.67 25.48 16 9 O -0.60 -32.71 16.33 -3.95 -0.06 -32.77 16 10 N -0.67 -29.37 4.95 -466.09 -2.31 -31.67 16 11 C 0.17 8.47 4.62 86.38 0.40 8.87 16 12 C 0.01 0.30 2.04 -52.93 -0.11 0.19 16 13 C -0.50 -25.03 8.43 25.60 0.22 -24.82 16 14 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 15 C 0.03 1.78 5.31 84.66 0.45 2.23 16 16 N -0.89 -50.17 10.11 21.45 0.22 -49.95 16 17 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 C -0.20 -8.54 9.96 30.62 0.30 -8.24 16 22 C -0.18 -6.95 9.92 30.62 0.30 -6.65 16 23 C -0.07 -1.84 9.51 22.53 0.21 -1.63 16 24 C -0.12 -2.58 10.00 22.25 0.22 -2.36 16 25 C 0.10 2.20 7.31 22.57 0.17 2.37 16 26 F -0.12 -2.36 16.92 44.97 0.76 -1.60 16 27 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 1.18 8.12 -2.39 -0.02 1.17 16 29 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.43 4.94 8.63 -92.71 -0.80 4.14 16 31 H 0.12 5.21 6.03 -2.91 -0.02 5.19 16 32 H 0.41 16.06 6.20 -92.71 -0.57 15.48 16 33 H 0.02 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.08 4.48 5.90 -2.39 -0.01 4.46 16 35 H 0.25 14.42 8.32 -92.71 -0.77 13.64 16 36 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.16 3.75 6.46 -2.91 -0.02 3.73 16 41 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -75.45 354.87 3.28 -72.18 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.28 Total: 33.34 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.55 Total: 3.10 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -3.68 Total: -96.69 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.11 Total: -54.23 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.76 Total: -1.60 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -75.45 3.28 -72.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431158803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.985 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds