Wall clock time and date at job start Tue Mar 31 2020 12:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47060 * 2 1 4 4 N 1.40072 * 126.06405 * 269.95728 * 3 2 1 5 5 C 1.30832 * 108.36827 * 180.02562 * 4 3 2 6 6 C 1.40235 * 108.34198 * 0.02562 * 5 4 3 7 7 N 1.40843 * 126.07930 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99691 * 0.02801 * 7 6 5 9 9 O 1.21606 * 120.00158 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00122 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99926 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00073 * 179.97438 * 10 8 7 13 13 C 1.50700 * 109.47284 * 90.00014 * 12 10 8 14 14 H 1.07997 * 119.99649 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00033 * 180.02562 * 13 12 10 16 16 N 1.31510 * 119.99957 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00029 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46557 * 90.00528 * 17 15 13 19 19 H 1.48498 * 109.47186 * 210.00385 * 17 15 13 20 20 H 1.48499 * 109.47135 * 330.00901 * 17 15 13 21 21 C 1.35735 * 107.84803 * 359.97438 * 6 5 4 22 22 C 1.50703 * 126.21650 * 179.73517 * 21 6 5 23 23 F 1.39900 * 109.47285 * 270.02721 * 22 21 6 24 24 F 1.39899 * 109.46993 * 30.03042 * 22 21 6 25 25 F 1.39902 * 109.46855 * 150.02844 * 22 21 6 26 26 H 1.09002 * 109.46805 * 60.00020 * 1 2 3 27 27 H 1.09000 * 109.46745 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47163 * 299.99608 * 1 2 3 29 29 H 1.09000 * 109.47163 * 240.00392 * 2 1 3 30 30 H 1.08999 * 109.47310 * 120.00546 * 2 1 3 31 31 H 1.07997 * 125.83298 * 180.02562 * 5 4 3 32 32 H 0.97000 * 120.00678 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46839 * 90.00492 * 11 10 8 34 34 H 1.08999 * 109.47305 * 210.00053 * 11 10 8 35 35 H 1.09000 * 109.47099 * 330.00580 * 11 10 8 36 36 H 1.09004 * 109.46946 * 209.99582 * 12 10 8 37 37 H 1.09001 * 109.47429 * 329.99473 * 12 10 8 38 38 H 0.97002 * 119.99958 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2940 2.1584 -1.1323 5 6 2.7097 3.3334 -0.7346 6 6 2.7149 3.3483 0.6677 7 7 3.0981 4.4301 1.4842 8 6 3.5069 5.5856 0.9238 9 8 3.5454 5.6941 -0.2868 10 7 3.8741 6.6206 1.7051 11 6 3.8283 6.4898 3.1635 12 6 4.3190 7.8764 1.0959 13 6 3.1325 8.7818 0.8876 14 1 2.1456 8.4543 1.1793 15 6 3.3066 10.0278 0.3235 16 7 2.2712 10.8181 0.1422 17 14 5.0136 10.5940 -0.1818 18 1 5.2710 10.1950 -1.5889 19 1 5.1005 12.0716 -0.0624 20 1 6.0261 9.9654 0.7041 21 6 2.2850 2.1350 1.0982 22 6 2.1370 1.7008 2.5337 23 9 3.3340 1.1246 2.9724 24 9 1.8355 2.8120 3.3283 25 9 1.1040 0.7625 2.6329 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.9994 4.1521 -1.3766 32 1 3.0677 4.3435 2.4499 33 1 4.7856 6.1140 3.5248 34 1 3.6287 7.4640 3.6096 35 1 3.0367 5.7938 3.4412 36 1 5.0376 8.3650 1.7541 37 1 4.7899 7.6676 0.1353 38 1 2.3937 11.6945 -0.2550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439936498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:06 Heat of formation + Delta-G solvation = -79.302631 kcal Electronic energy + Delta-G solvation = -27997.183377 eV Core-core repulsion = 23462.857269 eV Total energy + Delta-G solvation = -4534.326108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -50.54969 -48.10821 -47.99953 -41.59252 -39.56513 -35.55257 -34.83898 -34.01861 -32.48745 -31.24981 -29.21986 -28.20400 -26.33405 -25.72642 -23.97707 -22.92301 -21.46644 -21.17416 -19.34645 -18.94641 -18.68221 -18.52434 -17.30528 -16.98967 -16.68164 -15.68439 -15.47211 -15.12190 -14.95105 -14.81002 -14.64614 -14.47137 -14.41648 -14.17261 -14.16385 -13.91231 -13.63951 -13.38191 -13.07110 -12.66519 -12.45117 -12.43230 -12.34175 -12.10859 -11.67319 -11.51932 -11.05532 -10.99972 -10.71779 -10.53575 -10.16998 -9.71276 -9.62862 -9.45076 -8.59892 -8.08579 -7.63819 -6.09408 -4.08798 1.19466 1.82628 2.40679 2.57176 2.92103 3.29345 3.32739 3.35432 3.37540 3.66483 3.73885 4.02512 4.25868 4.30169 4.38803 4.68325 4.80841 4.88880 5.16647 5.21578 5.26497 5.29189 5.40805 5.56774 5.72671 5.81047 6.03681 6.18586 6.44955 6.58613 6.79453 6.81328 7.14252 7.30294 7.45938 7.58669 8.31212 8.45374 8.92864 9.00604 9.50054 11.03916 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.003552 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.769149 B = 7881.092888 C = 8465.857113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.131 3.869 3 N -0.351 5.351 4 N -0.242 5.242 5 C 0.052 3.948 6 C 0.125 3.875 7 N -0.669 5.669 8 C 0.706 3.294 9 O -0.567 6.567 10 N -0.603 5.603 11 C 0.080 3.920 12 C 0.230 3.770 13 C -0.532 4.532 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C -0.092 4.092 22 C 0.547 3.453 23 F -0.169 7.169 24 F -0.165 7.165 25 F -0.172 7.172 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.223 0.777 32 H 0.405 0.595 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 -22.602 6.534 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.140 5.140 4 N -0.064 5.064 5 C -0.135 4.135 6 C 0.015 3.985 7 N -0.320 5.320 8 C 0.408 3.592 9 O -0.443 6.443 10 N -0.338 5.338 11 C -0.064 4.064 12 C 0.110 3.890 13 C -0.570 4.570 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.220 4.220 22 C 0.491 3.509 23 F -0.151 7.151 24 F -0.147 7.147 25 F -0.153 7.153 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.239 0.761 32 H 0.244 0.756 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.146 -23.072 4.683 23.543 hybrid contribution 0.768 0.852 1.313 1.743 sum 0.623 -22.221 5.995 23.024 Atomic orbital electron populations 1.22254 0.93818 1.03266 1.03753 1.21792 0.95735 0.76791 1.04650 1.48230 1.52521 1.11977 1.01284 1.77451 1.18259 1.03629 1.07079 1.24759 0.99729 0.96076 0.92916 1.17277 1.02986 0.86477 0.91717 1.42610 1.68913 1.11236 1.09234 1.15713 0.78578 0.79330 0.85568 1.90768 1.59930 1.81695 1.11944 1.47104 1.67812 1.13521 1.05326 1.21681 0.99949 1.03415 0.81364 1.19666 0.95958 0.79266 0.94125 1.21341 0.94664 0.99352 1.41670 0.90703 1.24845 0.96823 0.96341 0.94932 1.69896 1.29837 1.09644 1.44087 0.86852 0.84885 0.77989 0.79940 1.19818 1.21102 1.19035 1.19785 1.18903 0.95223 0.88088 1.17149 0.74155 0.74868 0.84720 1.93266 1.46179 1.84813 1.90791 1.93182 1.92976 1.52785 1.75708 1.93193 1.59367 1.66084 1.96668 0.91313 0.90312 0.91515 0.88000 0.89085 0.76099 0.75632 0.93253 0.89708 0.92803 0.94816 0.94149 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.05 37.16 0.37 -0.95 16 2 C 0.13 1.12 6.34 -4.04 -0.03 1.09 16 3 N -0.35 -4.45 3.64 -56.82 -0.21 -4.66 16 4 N -0.24 -3.67 12.57 30.70 0.39 -3.28 16 5 C 0.05 0.87 10.84 -17.23 -0.19 0.69 16 6 C 0.12 1.98 6.76 -83.86 -0.57 1.42 16 7 N -0.67 -10.91 5.24 -14.39 -0.08 -10.99 16 8 C 0.71 14.34 8.25 -86.92 -0.72 13.62 16 9 O -0.57 -13.24 13.08 5.27 0.07 -13.17 16 10 N -0.60 -12.13 2.86 -188.73 -0.54 -12.67 16 11 C 0.08 1.18 10.20 59.85 0.61 1.79 16 12 C 0.23 5.45 4.23 -5.19 -0.02 5.43 16 13 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 14 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 17 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 21 C -0.09 -1.23 6.43 -81.71 -0.53 -1.76 16 22 C 0.55 6.15 3.32 36.01 0.12 6.27 16 23 F -0.17 -1.84 17.30 2.25 0.04 -1.80 16 24 F -0.17 -1.89 15.16 2.25 0.03 -1.85 16 25 F -0.17 -1.71 13.79 2.25 0.03 -1.68 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.58 6.77 -51.93 -0.35 0.23 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.64 7.02 -51.93 -0.36 0.27 16 31 H 0.22 4.01 5.91 -52.49 -0.31 3.70 16 32 H 0.41 5.58 4.57 -40.82 -0.19 5.40 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 35 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 36 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 37 H 0.04 1.01 6.85 -51.93 -0.36 0.66 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -33.03 329.26 -4.54 -37.57 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.97 Total: 3.41 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -1.38 Total: 14.29 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.34 Total: -58.17 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.10 Total: -5.33 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.03 -4.54 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439936498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.733 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds