Wall clock time and date at job start Tue Mar 31 2020 13:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00181 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99845 * 0.02562 * 13 12 11 15 15 N 1.34782 * 120.00074 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00016 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46810 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.26250 * 54.29797 * 17 16 15 19 19 C 1.54138 * 109.27130 * 294.79144 * 17 16 15 20 20 S 1.83297 * 101.09003 * 211.55984 * 19 17 16 21 21 C 1.77435 * 96.59872 * 24.87662 * 20 19 17 22 22 C 1.38814 * 130.57257 * 164.57307 * 21 20 19 23 23 C 1.38022 * 120.16307 * 180.20341 * 22 21 20 24 24 C 1.38320 * 119.29146 * 0.02662 * 23 22 21 25 25 C 1.37701 * 120.54578 * 359.87286 * 24 23 22 26 26 C 1.38778 * 108.25349 * 344.63615 * 21 20 19 27 27 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 29 29 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 30 30 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 31 31 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 32 32 H 1.09009 * 109.47216 * 299.99697 * 11 10 9 33 33 H 1.08998 * 109.47141 * 59.99668 * 11 10 9 34 34 H 0.97002 * 119.99778 * 359.97438 * 12 11 10 35 35 H 0.97002 * 119.99885 * 0.02562 * 15 13 12 36 36 H 1.08998 * 109.46965 * 300.00212 * 16 15 13 37 37 H 1.08994 * 109.46979 * 60.00162 * 16 15 13 38 38 H 1.09002 * 111.09504 * 329.51212 * 19 17 16 39 39 H 1.08991 * 111.09946 * 93.59908 * 19 17 16 40 40 H 1.08008 * 119.91997 * 0.22767 * 22 21 20 41 41 H 1.08007 * 120.35751 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.73298 * 179.85444 * 24 23 22 43 43 H 1.07996 * 119.47817 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 7 2.4325 -6.1005 0.0030 13 6 1.9833 -7.3712 0.0034 14 8 0.7879 -7.5934 0.0017 15 7 2.8592 -8.3956 0.0045 16 6 2.3709 -9.7769 0.0043 17 6 3.5610 -10.7384 0.0065 18 1 4.2168 -10.4970 0.8430 19 6 4.3421 -10.5841 -1.3133 20 16 4.9756 -12.2878 -1.5494 21 6 3.7176 -13.1061 -0.6028 22 6 3.3577 -14.4456 -0.5468 23 6 2.3261 -14.8528 0.2749 24 6 1.6578 -13.9127 1.0384 25 6 2.0162 -12.5843 0.9844 26 6 3.0582 -12.1526 0.1599 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6248 -2.5571 -0.8896 30 1 2.8727 -3.6046 -0.8877 31 1 2.8714 -3.6038 0.8922 32 1 0.8528 -5.0447 0.8906 33 1 0.8548 -5.0449 -0.8894 34 1 3.3862 -5.9232 0.0040 35 1 3.8129 -8.2183 0.0055 36 1 1.7644 -9.9479 0.8937 37 1 1.7664 -9.9484 -0.8862 38 1 3.6800 -10.2951 -2.1296 39 1 5.1606 -9.8727 -1.2039 40 1 3.8864 -15.1711 -1.1473 41 1 2.0437 -15.8942 0.3213 42 1 0.8480 -14.2231 1.6821 43 1 1.4829 -11.8650 1.5881 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454449855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:39 Heat of formation + Delta-G solvation = -24.272717 kcal Electronic energy + Delta-G solvation = -22898.800074 eV Core-core repulsion = 19455.010197 eV Total energy + Delta-G solvation = -3443.789877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34075 -39.64748 -36.81214 -35.47287 -33.79099 -33.44759 -31.41714 -31.05657 -29.90743 -27.48640 -25.95572 -23.73051 -23.16976 -22.70934 -21.12265 -20.94432 -20.68667 -18.49467 -17.91858 -16.97262 -16.66106 -16.12000 -15.82388 -15.67043 -15.31369 -15.15466 -14.48838 -14.23387 -14.13552 -13.81035 -13.73338 -13.49400 -13.42327 -12.97159 -12.93642 -12.63826 -12.22421 -11.85712 -11.82103 -11.63054 -11.41886 -10.89685 -10.80401 -10.63077 -10.31670 -10.13944 -10.13580 -10.02495 -9.82164 -9.36188 -9.29353 -8.73276 -8.58892 -8.34668 -7.88605 -6.37779 -4.07669 0.65809 0.83765 1.11122 1.76113 2.64195 3.16693 3.24908 3.42429 3.44371 3.63350 3.78807 4.00047 4.19617 4.33052 4.43154 4.53545 4.56358 4.62597 4.85113 4.91469 4.99780 5.06670 5.23820 5.33762 5.39341 5.49044 5.50597 5.59138 5.68279 5.76844 5.86768 6.01791 6.03820 6.24706 6.37972 6.38920 6.47226 6.66287 6.84757 6.92128 7.34857 7.47336 8.01509 8.17114 8.43499 8.62482 8.86060 9.64911 11.02918 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.032973 B = 0.001781 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.987418 B =15721.472788 C =16387.183885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.604 4.604 8 H 0.049 0.951 9 C 0.010 3.990 10 C -0.113 4.113 11 C 0.134 3.866 12 N -0.741 5.741 13 C 0.701 3.299 14 O -0.591 6.591 15 N -0.753 5.753 16 C 0.152 3.848 17 C -0.063 4.063 18 H 0.107 0.893 19 C -0.083 4.083 20 S -0.147 6.147 21 C -0.075 4.075 22 C -0.089 4.089 23 C -0.101 4.101 24 C -0.118 4.118 25 C -0.089 4.089 26 C -0.099 4.099 27 H 0.269 0.731 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.394 0.606 35 H 0.395 0.605 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.126 -30.932 0.315 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.067 0.933 9 C -0.027 4.027 10 C -0.151 4.151 11 C 0.011 3.989 12 N -0.395 5.395 13 C 0.401 3.599 14 O -0.469 6.469 15 N -0.410 5.410 16 C 0.026 3.974 17 C -0.083 4.083 18 H 0.125 0.875 19 C -0.231 4.231 20 S 0.096 5.904 21 C -0.188 4.188 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.108 4.108 26 C -0.105 4.105 27 H 0.080 0.920 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.228 0.772 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.892 -29.809 -0.409 31.410 hybrid contribution 0.120 -1.175 0.676 1.361 sum 10.012 -30.983 0.268 32.562 Atomic orbital electron populations 1.70780 1.06882 1.30698 1.46368 1.25870 0.96575 1.02785 0.93782 0.83533 0.74876 0.75346 0.76452 1.20740 1.21466 1.21472 1.22009 0.94225 0.91933 1.56063 0.93310 1.19158 0.94517 0.92630 0.96417 1.21751 0.99505 0.92798 1.01080 1.21513 0.91326 0.84205 1.01838 1.45350 1.10461 1.04398 1.79278 1.15972 0.85243 0.80733 0.77988 1.90933 1.14108 1.84111 1.57750 1.45082 1.08971 1.05105 1.81814 1.21176 0.94322 0.78619 1.03269 1.20787 0.97406 0.91917 0.98180 0.87514 1.24493 1.03002 0.95727 0.99856 1.86210 1.33762 1.03762 1.66663 1.21998 0.99237 0.96810 1.00720 1.20438 0.97819 0.93096 0.99927 1.21151 0.95269 0.99867 0.95774 1.21031 1.00270 0.92722 0.99795 1.20960 0.95596 0.96354 0.97908 1.20534 0.98109 0.93166 0.98660 0.92011 0.97139 0.97135 0.92581 0.92572 0.91989 0.91975 0.77244 0.77175 0.90850 0.90991 0.87661 0.86413 0.85447 0.84990 0.85294 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.02 13.65 55.43 0.76 -27.26 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 25.12 29.90 -169.99 -5.08 20.04 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.60 -17.04 9.11 -34.44 -0.31 -17.35 16 8 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 9 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 10 C -0.11 -2.20 5.27 -26.73 -0.14 -2.34 16 11 C 0.13 2.35 5.67 -4.05 -0.02 2.32 16 12 N -0.74 -10.26 5.56 -65.23 -0.36 -10.62 16 13 C 0.70 10.13 8.57 -86.91 -0.74 9.38 16 14 O -0.59 -11.25 16.34 5.29 0.09 -11.17 16 15 N -0.75 -7.17 5.36 -65.23 -0.35 -7.52 16 16 C 0.15 1.35 4.75 -4.04 -0.02 1.33 16 17 C -0.06 -0.44 2.64 -91.10 -0.24 -0.68 16 18 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 19 C -0.08 -0.53 6.58 37.75 0.25 -0.28 16 20 S -0.15 -1.23 23.08 -107.50 -2.48 -3.71 16 21 C -0.08 -0.65 6.48 -39.17 -0.25 -0.91 16 22 C -0.09 -0.67 10.05 -39.45 -0.40 -1.07 16 23 C -0.10 -0.64 10.08 -39.63 -0.40 -1.04 16 24 C -0.12 -0.78 10.00 -39.75 -0.40 -1.17 16 25 C -0.09 -0.67 9.44 -39.23 -0.37 -1.04 16 26 C -0.10 -0.81 5.56 -103.79 -0.58 -1.38 16 27 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 28 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 29 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.39 4.24 8.49 -40.82 -0.35 3.90 16 35 H 0.39 2.52 8.26 -40.82 -0.34 2.18 16 36 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 37 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.10 0.72 7.86 -51.93 -0.41 0.31 16 39 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 42 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.13 0.84 7.04 -52.49 -0.37 0.47 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -34.90 369.78 -12.08 -46.98 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.37 Total: 1.48 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -3.84 Total: -13.79 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.04 Total: -45.40 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.48 Total: -3.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.90 -12.08 -46.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454449855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.704 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds