Wall clock time and date at job start Tue Mar 31 2020 13:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00181 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99845 * 0.02562 * 13 12 11 15 15 N 1.34782 * 120.00074 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00016 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46810 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.26250 * 54.29797 * 17 16 15 19 19 C 1.54138 * 109.27130 * 294.79144 * 17 16 15 20 20 S 1.83297 * 101.09003 * 211.55984 * 19 17 16 21 21 C 1.77435 * 96.59872 * 24.87662 * 20 19 17 22 22 C 1.38814 * 130.57257 * 164.57307 * 21 20 19 23 23 C 1.38022 * 120.16307 * 180.20341 * 22 21 20 24 24 C 1.38320 * 119.29146 * 0.02662 * 23 22 21 25 25 C 1.37701 * 120.54578 * 359.87286 * 24 23 22 26 26 C 1.38778 * 108.25349 * 344.63615 * 21 20 19 27 27 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 29 29 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 30 30 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 31 31 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 32 32 H 1.09009 * 109.47216 * 299.99697 * 11 10 9 33 33 H 1.08998 * 109.47141 * 59.99668 * 11 10 9 34 34 H 0.97002 * 119.99778 * 359.97438 * 12 11 10 35 35 H 0.97002 * 119.99885 * 0.02562 * 15 13 12 36 36 H 1.08998 * 109.46965 * 300.00212 * 16 15 13 37 37 H 1.08994 * 109.46979 * 60.00162 * 16 15 13 38 38 H 1.09002 * 111.09504 * 329.51212 * 19 17 16 39 39 H 1.08991 * 111.09946 * 93.59908 * 19 17 16 40 40 H 1.08008 * 119.91997 * 0.22767 * 22 21 20 41 41 H 1.08007 * 120.35751 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.73298 * 179.85444 * 24 23 22 43 43 H 1.07996 * 119.47817 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 7 2.4325 -6.1005 0.0030 13 6 1.9833 -7.3712 0.0034 14 8 0.7879 -7.5934 0.0017 15 7 2.8592 -8.3956 0.0045 16 6 2.3709 -9.7769 0.0043 17 6 3.5610 -10.7384 0.0065 18 1 4.2168 -10.4970 0.8430 19 6 4.3421 -10.5841 -1.3133 20 16 4.9756 -12.2878 -1.5494 21 6 3.7176 -13.1061 -0.6028 22 6 3.3577 -14.4456 -0.5468 23 6 2.3261 -14.8528 0.2749 24 6 1.6578 -13.9127 1.0384 25 6 2.0162 -12.5843 0.9844 26 6 3.0582 -12.1526 0.1599 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6248 -2.5571 -0.8896 30 1 2.8727 -3.6046 -0.8877 31 1 2.8714 -3.6038 0.8922 32 1 0.8528 -5.0447 0.8906 33 1 0.8548 -5.0449 -0.8894 34 1 3.3862 -5.9232 0.0040 35 1 3.8129 -8.2183 0.0055 36 1 1.7644 -9.9479 0.8937 37 1 1.7664 -9.9484 -0.8862 38 1 3.6800 -10.2951 -2.1296 39 1 5.1606 -9.8727 -1.2039 40 1 3.8864 -15.1711 -1.1473 41 1 2.0437 -15.8942 0.3213 42 1 0.8480 -14.2231 1.6821 43 1 1.4829 -11.8650 1.5881 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454449855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:38 Heat of formation + Delta-G solvation = -46.279880 kcal Electronic energy + Delta-G solvation = -22899.754376 eV Core-core repulsion = 19455.010197 eV Total energy + Delta-G solvation = -3444.744179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26053 -40.42752 -37.68091 -36.92211 -35.44315 -34.54911 -32.78316 -31.90280 -30.52186 -28.63809 -27.36216 -25.00296 -24.12385 -23.57836 -22.52966 -22.03633 -21.60772 -19.46255 -18.92967 -18.62897 -17.64824 -17.09622 -16.64813 -16.39254 -16.15033 -15.87337 -15.67332 -15.62110 -15.45702 -15.15314 -14.88723 -14.51473 -14.24582 -14.00227 -13.71235 -13.59278 -13.50711 -13.15943 -12.77473 -12.57345 -12.56680 -12.37141 -12.05709 -11.99278 -11.86580 -11.77894 -11.42644 -11.21762 -10.70017 -10.68823 -10.53360 -10.47549 -9.85798 -9.82922 -8.67573 -8.49045 -6.38756 0.11330 0.29246 0.54997 1.19295 1.54469 1.60530 1.63330 1.82217 2.08207 2.59040 2.63163 3.17456 3.19080 3.24387 3.57377 3.61374 3.90953 4.04610 4.06644 4.12631 4.14322 4.32823 4.40224 4.43168 4.44768 4.53330 4.66045 4.71745 4.80872 4.82525 4.89418 4.97609 4.98158 5.22311 5.33637 5.35945 5.37508 5.45079 5.49033 5.50544 5.88805 5.92914 5.99905 6.19865 6.57523 7.04757 7.44233 7.51406 8.73210 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.032973 B = 0.001781 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.987418 B =15721.472788 C =16387.183885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.044 4.044 3 Si 1.120 2.880 4 H -0.287 1.287 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.617 4.617 8 H 0.058 0.942 9 C 0.006 3.994 10 C -0.094 4.094 11 C 0.150 3.850 12 N -0.729 5.729 13 C 0.699 3.301 14 O -0.640 6.640 15 N -0.728 5.728 16 C 0.157 3.843 17 C -0.051 4.051 18 H 0.122 0.878 19 C -0.075 4.075 20 S -0.175 6.175 21 C -0.094 4.094 22 C -0.102 4.102 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.102 4.102 26 C -0.112 4.112 27 H 0.254 0.746 28 H -0.011 1.011 29 H -0.011 1.011 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.413 0.587 35 H 0.414 0.586 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.149 0.851 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.363 -31.566 0.669 33.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.941 3.059 4 H -0.213 1.213 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.655 4.655 8 H 0.077 0.923 9 C -0.032 4.032 10 C -0.132 4.132 11 C 0.025 3.975 12 N -0.385 5.385 13 C 0.399 3.601 14 O -0.521 6.521 15 N -0.386 5.386 16 C 0.031 3.969 17 C -0.070 4.070 18 H 0.140 0.860 19 C -0.223 4.223 20 S 0.067 5.933 21 C -0.206 4.206 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.142 4.142 25 C -0.122 4.122 26 C -0.118 4.118 27 H 0.064 0.936 28 H 0.008 0.992 29 H 0.007 0.993 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.250 0.750 35 H 0.252 0.748 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.167 0.833 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.210 -30.494 -0.054 32.848 hybrid contribution -0.612 -1.097 0.571 1.379 sum 11.598 -31.591 0.517 33.657 Atomic orbital electron populations 1.70921 1.08122 1.29861 1.48839 1.27514 0.96609 1.07150 0.92813 0.82905 0.74059 0.70838 0.78132 1.21274 1.19183 1.19217 1.22485 0.94969 0.93092 1.54958 0.92343 1.19130 0.95202 0.94433 0.94391 1.21466 0.98159 0.91360 1.02230 1.21051 0.91373 0.84598 1.00474 1.44972 1.10856 1.03474 1.79164 1.16116 0.85009 0.81349 0.77671 1.90908 1.16532 1.84821 1.59879 1.44830 1.09423 1.04303 1.80020 1.21147 0.95111 0.78313 1.02283 1.20700 0.96557 0.90715 0.99018 0.86006 1.24582 1.03525 0.94863 0.99320 1.86242 1.34359 1.05496 1.67192 1.22174 0.99658 0.97515 1.01261 1.20726 0.98352 0.93039 1.00391 1.21487 0.94460 1.01164 0.94848 1.21360 1.00595 0.92425 0.99805 1.21174 0.95731 0.97147 0.98155 1.20711 0.98502 0.93637 0.98970 0.93613 0.99228 0.99251 0.91327 0.91300 0.93480 0.93516 0.75020 0.74842 0.91462 0.92503 0.88098 0.83923 0.84538 0.82449 0.83281 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.90 13.65 21.45 0.29 -58.60 16 2 C -0.04 -2.54 5.46 84.65 0.46 -2.07 16 3 Si 1.12 49.54 29.90 68.60 2.05 51.60 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.62 -34.59 9.11 25.60 0.23 -34.36 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.01 0.31 4.28 29.85 0.13 0.44 16 10 C -0.09 -3.56 5.27 30.59 0.16 -3.40 16 11 C 0.15 5.18 5.67 86.38 0.49 5.67 16 12 N -0.73 -18.96 5.56 -478.54 -2.66 -21.62 16 13 C 0.70 19.38 8.57 179.05 1.53 20.92 16 14 O -0.64 -24.44 16.34 -3.99 -0.07 -24.50 16 15 N -0.73 -12.45 5.36 -478.54 -2.56 -15.01 16 16 C 0.16 2.61 4.75 86.38 0.41 3.02 16 17 C -0.05 -0.62 2.64 -11.10 -0.03 -0.64 16 18 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 19 C -0.08 -0.83 6.58 72.37 0.48 -0.36 16 20 S -0.18 -2.79 23.08 -56.49 -1.30 -4.09 16 21 C -0.09 -1.57 6.48 22.54 0.15 -1.43 16 22 C -0.10 -1.44 10.05 22.36 0.22 -1.22 16 23 C -0.10 -1.10 10.08 22.24 0.22 -0.88 16 24 C -0.12 -1.43 10.00 22.16 0.22 -1.21 16 25 C -0.10 -1.46 9.44 22.50 0.21 -1.25 16 26 C -0.11 -1.74 5.56 -19.33 -0.11 -1.85 16 27 H 0.25 16.21 7.22 -92.70 -0.67 15.54 16 28 H -0.01 -0.58 8.01 -2.39 -0.02 -0.60 16 29 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.41 7.65 8.49 -92.71 -0.79 6.86 16 35 H 0.41 3.97 8.26 -92.71 -0.77 3.20 16 36 H 0.07 1.25 6.91 -2.39 -0.02 1.23 16 37 H 0.06 1.15 8.04 -2.39 -0.02 1.14 16 38 H 0.10 1.24 7.86 -2.39 -0.02 1.22 16 39 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 42 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 43 H 0.13 1.66 7.04 -2.91 -0.02 1.64 16 Total: -1.00 -76.99 369.78 0.11 -76.87 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.42 Total: 13.96 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.79 Total: -18.61 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -4.93 Total: -95.23 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.07 Total: -24.50 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.05 Total: 51.60 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -1.30 Total: -4.09 kcal Total: -76.99 0.11 -76.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454449855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.595 kcal (2) G-P(sol) polarization free energy of solvation -76.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds