Wall clock time and date at job start Tue Mar 31 2020 12:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99688 * 2 1 4 4 N 1.46501 * 109.46953 * 125.00411 * 3 2 1 5 5 C 1.46505 * 119.99618 * 269.99631 * 4 3 2 6 6 C 1.50697 * 109.47237 * 269.99867 * 5 4 3 7 7 H 1.07997 * 119.99758 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99911 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00105 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99920 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47095 * 90.00231 * 10 8 6 12 12 H 1.48497 * 109.47326 * 210.00290 * 10 8 6 13 13 H 1.48508 * 109.47145 * 330.00428 * 10 8 6 14 14 C 1.34774 * 120.00038 * 89.99757 * 4 3 2 15 15 O 1.21597 * 119.99605 * 180.02562 * 14 4 3 16 16 N 1.34772 * 120.00201 * 0.02562 * 14 4 3 17 17 C 1.40089 * 119.99976 * 185.29868 * 16 14 4 18 18 C 1.39090 * 119.94733 * 213.27516 * 17 16 14 19 19 C 1.38142 * 120.33378 * 179.97438 * 18 17 16 20 20 C 1.38286 * 120.21924 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.05395 * 179.97438 * 20 19 18 22 22 C 1.40097 * 119.88806 * 359.97438 * 20 19 18 23 23 C 1.46992 * 120.16155 * 180.02562 * 22 20 19 24 24 C 1.50697 * 120.00254 * 179.97438 * 23 22 20 25 25 O 1.21277 * 120.00145 * 0.27585 * 23 22 20 26 26 C 1.38385 * 119.94605 * 33.51263 * 17 16 14 27 27 H 1.08005 * 120.00458 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00330 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00330 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47410 * 4.99954 * 3 2 1 31 31 H 1.09007 * 109.47135 * 244.99667 * 3 2 1 32 32 H 1.09001 * 109.47117 * 30.00286 * 5 4 3 33 33 H 1.09000 * 109.46650 * 150.00085 * 5 4 3 34 34 H 0.97001 * 120.00231 * 179.97438 * 9 8 6 35 35 H 0.96995 * 119.99750 * 5.29844 * 16 14 4 36 36 H 1.08002 * 119.83221 * 359.97438 * 18 17 16 37 37 H 1.07995 * 119.88587 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.46997 * 0.02562 * 24 23 22 39 39 H 1.09005 * 109.47167 * 119.99571 * 24 23 22 40 40 H 1.08999 * 109.47441 * 240.00073 * 24 23 22 41 41 H 1.08002 * 120.11345 * 0.04762 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3436 2.4804 7 1 3.3032 3.8371 1.6365 8 6 2.5183 4.0667 3.6082 9 7 1.9589 3.4659 4.6356 10 14 2.8714 5.8997 3.6769 11 1 1.6984 6.6495 3.1599 12 1 3.1351 6.3008 5.0821 13 1 4.0615 6.2062 2.8430 14 6 4.2496 0.8662 0.9823 15 8 5.0216 0.8880 1.9215 16 7 4.6499 0.3763 -0.2077 17 6 5.9164 -0.2089 -0.3341 18 6 6.6203 -0.0898 -1.5278 19 6 7.8700 -0.6633 -1.6609 20 6 8.4316 -1.3607 -0.6071 21 9 9.6538 -1.9207 -0.7412 22 6 7.7312 -1.4855 0.5997 23 6 8.3227 -2.2250 1.7239 24 6 7.5663 -2.3565 3.0207 25 8 9.4219 -2.7246 1.6098 26 6 6.4629 -0.9089 0.7272 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4887 1.6966 2.5459 33 1 3.0989 1.3603 3.2259 34 1 1.7299 3.9745 5.4293 35 1 4.0610 0.4291 -0.9767 36 1 6.1878 0.4538 -2.3547 37 1 8.4101 -0.5667 -2.5912 38 1 6.6083 -1.8434 2.9361 39 1 7.3953 -3.4112 3.2362 40 1 8.1479 -1.9104 3.8275 41 1 5.9144 -1.0054 1.6526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455429096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:57 Heat of formation + Delta-G solvation = -48.286284 kcal Electronic energy + Delta-G solvation = -26535.113756 eV Core-core repulsion = 22524.069396 eV Total energy + Delta-G solvation = -4011.044360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.85305 -40.57930 -39.42723 -38.12290 -35.91740 -34.48949 -33.23724 -32.26111 -32.19054 -29.37755 -29.29800 -27.42777 -25.62531 -24.32605 -23.47225 -22.11338 -20.27337 -20.08259 -19.52934 -17.99221 -17.63575 -17.11432 -16.56199 -16.37178 -15.74998 -15.63943 -15.05021 -14.96444 -14.70918 -14.62157 -14.55823 -14.20873 -14.15005 -13.52925 -13.20237 -12.96622 -12.93642 -12.48927 -12.28223 -12.08807 -12.07846 -11.90959 -11.60689 -11.39249 -11.20271 -10.97221 -10.67701 -10.26284 -10.19737 -9.77712 -9.70714 -9.55472 -9.33237 -9.21171 -8.49983 -8.14308 -7.76291 -6.11224 -4.16222 0.44044 1.09519 2.25781 2.30209 2.99292 3.25600 3.33248 3.36344 3.40093 3.78599 3.90075 4.17124 4.25019 4.41370 4.53288 4.82120 5.04531 5.06778 5.12030 5.23263 5.24443 5.28291 5.33052 5.41156 5.43405 5.76037 5.82403 5.86052 5.94697 5.97864 6.02698 6.17040 6.38292 6.59595 6.67061 6.80930 6.89637 7.23457 7.36360 7.45370 7.51589 7.85476 8.14063 8.38013 8.83101 9.03910 9.49371 10.96686 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003612 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.641338 B = 7749.832146 C = 8628.189931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.599 5.599 5 C 0.262 3.738 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.698 3.302 15 O -0.566 6.566 16 N -0.695 5.695 17 C 0.162 3.838 18 C -0.096 4.096 19 C -0.146 4.146 20 C 0.126 3.874 21 F -0.123 7.123 22 C -0.188 4.188 23 C 0.398 3.602 24 C -0.202 4.202 25 O -0.454 6.454 26 C -0.051 4.051 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -9.961 -13.218 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.333 5.333 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.400 3.600 15 O -0.442 6.442 16 N -0.345 5.345 17 C 0.065 3.935 18 C -0.117 4.117 19 C -0.165 4.165 20 C 0.105 3.895 21 F -0.102 7.102 22 C -0.190 4.190 23 C 0.277 3.723 24 C -0.258 4.258 25 O -0.330 6.330 26 C -0.072 4.072 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.555 -10.123 -12.301 16.322 hybrid contribution -0.154 1.167 -0.382 1.238 sum 3.401 -8.956 -12.683 15.894 Atomic orbital electron populations 1.23846 0.95828 1.01909 0.99823 1.23414 0.96504 0.98838 1.00549 1.20555 0.93228 0.95871 0.89128 1.47623 1.08491 1.62824 1.14314 1.19273 0.95357 0.93667 0.77448 1.21427 1.40768 0.93312 1.01346 0.92465 1.24903 0.94970 0.98739 0.95281 1.69919 1.41879 1.36210 1.05189 0.86513 0.78598 0.84975 0.77429 1.20643 1.21048 1.19918 1.15948 0.83297 0.78599 0.82204 1.90916 1.52542 1.61698 1.39049 1.43042 1.15772 1.62803 1.12928 1.17432 0.86544 0.94832 0.94651 1.20942 0.93486 0.99567 0.97710 1.20842 0.96419 1.00435 0.98852 1.17829 0.81429 0.96264 0.93983 1.91551 1.39983 1.82576 1.96057 1.20523 0.97096 1.06064 0.95347 1.22349 0.85904 0.75530 0.88550 1.22240 1.02853 1.04656 0.96074 1.90571 1.19798 1.39046 1.83578 1.21580 0.93580 0.92125 0.99883 0.88670 0.88180 0.87718 0.88896 0.91527 0.94627 0.93614 0.92642 0.75806 0.84324 0.83952 0.89085 0.88772 0.88437 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 14.32 29.02 0.42 -1.57 16 2 C -0.17 -2.12 9.85 -36.02 -0.35 -2.47 16 3 C 0.14 1.91 5.66 -5.19 -0.03 1.88 16 4 N -0.60 -11.37 2.44 -182.18 -0.44 -11.81 16 5 C 0.26 6.34 5.16 -5.19 -0.03 6.32 16 6 C -0.53 -14.22 9.39 -34.44 -0.32 -14.55 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 10 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.70 13.08 8.01 -86.92 -0.70 12.38 16 15 O -0.57 -12.86 13.62 5.28 0.07 -12.79 16 16 N -0.70 -9.49 5.22 -14.25 -0.07 -9.56 16 17 C 0.16 2.14 6.27 -83.71 -0.53 1.62 16 18 C -0.10 -1.00 9.95 -39.30 -0.39 -1.39 16 19 C -0.15 -1.57 10.00 -39.60 -0.40 -1.96 16 20 C 0.13 1.71 7.29 -38.87 -0.28 1.43 16 21 F -0.12 -1.86 15.54 2.25 0.04 -1.82 16 22 C -0.19 -2.66 5.87 -105.03 -0.62 -3.28 16 23 C 0.40 5.72 7.22 -30.76 -0.22 5.49 16 24 C -0.20 -2.31 10.19 36.00 0.37 -1.95 16 25 O -0.45 -7.73 16.08 5.56 0.09 -7.64 16 26 C -0.05 -0.73 8.05 -38.91 -0.31 -1.04 16 27 H 0.09 0.92 8.06 -52.48 -0.42 0.50 16 28 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 29 H 0.10 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.09 1.38 7.72 -51.93 -0.40 0.98 16 31 H 0.07 0.72 6.29 -51.92 -0.33 0.40 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.40 4.18 6.51 -40.82 -0.27 3.92 16 36 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.09 1.06 5.60 -51.93 -0.29 0.77 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.16 2.45 4.28 -52.49 -0.22 2.23 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -33.19 358.11 -7.51 -40.70 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.81 Total: 3.57 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.49 Total: 2.56 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.22 Total: -46.14 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.16 Total: -20.43 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.19 -7.51 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455429096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.585 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds