Wall clock time and date at job start Tue Mar 31 2020 13:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00071 * 2 1 4 4 N 1.46499 * 109.47274 * 125.00229 * 3 2 1 5 5 C 1.46506 * 120.00195 * 266.86709 * 4 3 2 6 6 C 1.50702 * 109.46508 * 269.99373 * 5 4 3 7 7 H 1.07996 * 120.00366 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99644 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 119.99957 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47548 * 90.00052 * 10 8 6 12 12 H 1.48501 * 109.46829 * 210.00265 * 10 8 6 13 13 H 1.48499 * 109.47166 * 329.99852 * 10 8 6 14 14 C 1.34775 * 119.99697 * 86.86008 * 4 3 2 15 15 O 1.21519 * 119.99779 * 174.89946 * 14 4 3 16 16 C 1.48146 * 120.00466 * 354.89829 * 14 4 3 17 17 C 1.39135 * 119.68299 * 174.18833 * 16 14 4 18 18 C 1.38795 * 119.22390 * 179.97438 * 17 16 14 19 19 C 1.38287 * 118.58346 * 0.25741 * 18 17 16 20 20 N 1.48020 * 120.35442 * 179.72185 * 19 18 17 21 21 O 1.21800 * 120.00110 * 6.47473 * 20 19 18 22 22 O 1.21799 * 120.00094 * 186.46328 * 20 19 18 23 23 C 1.39462 * 119.29426 * 359.50048 * 19 18 17 24 24 N 1.38979 * 119.63836 * 180.22980 * 23 19 18 25 25 C 1.46506 * 119.99800 * 185.48590 * 24 23 19 26 26 N 1.32083 * 120.71978 * 0.50964 * 23 19 18 27 27 H 1.07994 * 119.99699 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99892 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00258 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46846 * 5.00804 * 3 2 1 31 31 H 1.08996 * 109.47929 * 245.00905 * 3 2 1 32 32 H 1.08998 * 109.47134 * 29.98940 * 5 4 3 33 33 H 1.08996 * 109.47039 * 150.00226 * 5 4 3 34 34 H 0.97003 * 119.99752 * 180.02562 * 9 8 6 35 35 H 1.07996 * 120.38718 * 0.02562 * 17 16 14 36 36 H 1.08003 * 120.70674 * 179.97438 * 18 17 16 37 37 H 0.97000 * 120.00253 * 5.48213 * 24 23 19 38 38 H 1.08998 * 109.47221 * 180.02562 * 25 24 23 39 39 H 1.09007 * 109.46654 * 300.00022 * 25 24 23 40 40 H 1.08994 * 109.47399 * 59.99240 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5815 1.9274 2.4049 6 6 2.9293 3.3937 2.4095 7 1 3.4090 3.8377 1.5498 8 6 2.6341 4.1688 3.5110 9 7 2.0495 3.6282 4.5578 10 14 3.0645 5.9864 3.5165 11 1 1.9246 6.7668 2.9719 12 1 3.3446 6.4245 4.9075 13 1 4.2667 6.2130 2.6747 14 6 4.2289 0.8085 1.0007 15 8 5.0320 0.9128 1.9067 16 6 4.6076 0.1061 -0.2475 17 6 5.9185 -0.3249 -0.4250 18 6 6.2628 -0.9825 -1.5978 19 6 5.2856 -1.1820 -2.5557 20 7 5.6109 -1.8732 -3.8235 21 8 6.7104 -2.3735 -3.9796 22 8 4.7791 -1.9420 -4.7105 23 6 3.9891 -0.7291 -2.3126 24 7 3.0004 -0.9301 -3.2683 25 6 1.6673 -0.3537 -3.0756 26 7 3.6920 -0.1064 -1.1863 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0897 31 1 2.6212 1.4028 -0.9314 32 1 1.5053 1.8089 2.5298 33 1 3.0997 1.4286 3.2238 34 1 1.8415 4.1735 5.3326 35 1 6.6594 -0.1506 0.3413 36 1 7.2733 -1.3269 -1.7607 37 1 3.1928 -1.4519 -4.0630 38 1 1.0322 -0.6161 -3.9216 39 1 1.2305 -0.7475 -2.1578 40 1 1.7474 0.7309 -3.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456058430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:08 Heat of formation + Delta-G solvation = 59.686944 kcal Electronic energy + Delta-G solvation = -27397.601900 eV Core-core repulsion = 23411.159573 eV Total energy + Delta-G solvation = -3986.442327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52011 -40.93442 -38.85127 -37.12419 -36.20317 -35.63475 -33.53464 -33.15103 -32.14281 -31.09513 -28.22801 -27.00256 -26.70539 -25.46645 -23.94734 -22.89123 -22.64002 -20.36994 -19.57079 -19.51545 -18.94883 -17.83626 -17.59705 -17.22037 -16.58505 -16.45739 -15.56715 -15.36328 -14.91803 -14.73777 -14.48871 -14.34098 -13.94452 -13.70360 -13.36437 -13.03331 -12.75072 -12.49341 -12.29462 -11.78761 -11.73320 -11.44761 -11.41052 -11.35026 -11.14394 -10.94164 -10.84304 -10.69160 -10.48107 -10.28644 -10.18645 -9.71439 -9.32784 -9.04958 -8.51960 -8.34293 -7.87905 -6.13101 -4.18459 -0.49782 0.85099 0.96348 1.17807 2.47039 2.64240 2.75829 3.25277 3.32377 3.35348 3.45415 3.67402 3.86014 4.11259 4.36619 4.45058 4.56907 4.83165 5.00556 5.21594 5.25795 5.30746 5.34436 5.44178 5.47396 5.64490 5.82195 5.83199 6.08568 6.11145 6.26314 6.52614 6.71273 6.84792 6.86351 6.98835 7.26469 7.35007 7.41263 7.57340 7.81800 8.09368 8.12619 8.60931 8.86518 9.46715 10.95055 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.003766 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.596392 B = 7432.716969 C = 8278.051790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C 0.134 3.866 4 N -0.561 5.561 5 C 0.245 3.755 6 C -0.529 4.529 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.546 3.454 15 O -0.515 6.515 16 C 0.204 3.796 17 C -0.182 4.182 18 C 0.030 3.970 19 C -0.167 4.167 20 N 0.057 4.943 21 O -0.157 6.157 22 O -0.202 6.202 23 C 0.457 3.543 24 N -0.697 5.697 25 C 0.078 3.922 26 N -0.496 5.496 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.425 0.575 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -9.992 -15.302 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.152 4.152 3 C 0.011 3.989 4 N -0.289 5.289 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.329 3.671 15 O -0.391 6.391 16 C 0.061 3.939 17 C -0.206 4.206 18 C 0.003 3.997 19 C -0.261 4.261 20 N 0.566 4.434 21 O -0.374 6.374 22 O -0.400 6.400 23 C 0.215 3.785 24 N -0.339 5.339 25 C -0.066 4.066 26 N -0.218 5.218 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.186 0.814 36 H 0.184 0.816 37 H 0.274 0.726 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.416 -9.210 -14.005 16.767 hybrid contribution 1.052 0.301 -0.722 1.311 sum 0.635 -8.909 -14.727 17.224 Atomic orbital electron populations 1.23778 0.95799 1.01544 1.02943 1.23215 0.95449 0.99077 0.97423 1.20997 0.92741 0.94833 0.90324 1.48235 1.11227 1.54230 1.15241 1.19462 0.96053 0.93234 0.78596 1.21371 1.40135 0.93407 1.01894 0.92301 1.24919 0.94908 0.98950 0.95135 1.69926 1.41506 1.36281 1.05401 0.86477 0.78787 0.84628 0.77434 1.20596 1.21017 1.19844 1.17703 0.83646 0.80728 0.85051 1.90823 1.49456 1.58988 1.39796 1.22085 0.89786 0.89668 0.92371 1.21924 0.97680 1.02333 0.98698 1.21282 0.99304 0.89629 0.89462 1.21641 0.96847 1.17446 0.90190 1.43321 1.00117 0.98312 1.01634 1.94536 1.09386 1.46982 1.86501 1.94167 1.43828 1.65982 1.36031 1.18288 0.84660 0.86984 0.88610 1.45660 1.10636 1.55223 1.22348 1.22000 0.81937 0.99450 1.03204 1.68502 1.34055 1.18717 1.00568 0.89072 0.88417 0.88101 0.90118 0.88175 0.94283 0.93631 0.92585 0.81401 0.81571 0.72624 0.90405 0.90498 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.44 13.85 29.01 0.40 -2.04 16 2 C -0.13 -1.81 6.09 -36.03 -0.22 -2.03 16 3 C 0.13 2.14 5.41 -5.19 -0.03 2.11 16 4 N -0.56 -11.28 2.45 -177.43 -0.43 -11.72 16 5 C 0.24 6.07 5.11 -5.19 -0.03 6.04 16 6 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 10 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 14 C 0.55 10.69 7.62 -12.19 -0.09 10.60 16 15 O -0.52 -11.84 15.96 5.35 0.09 -11.76 16 16 C 0.20 3.08 6.57 -83.03 -0.55 2.53 16 17 C -0.18 -2.28 9.62 -39.04 -0.38 -2.65 16 18 C 0.03 0.32 9.66 -39.36 -0.38 -0.06 16 19 C -0.17 -2.01 6.89 -79.47 -0.55 -2.56 16 20 N 0.06 0.72 4.45 34.19 0.15 0.87 16 21 O -0.16 -2.04 18.53 -29.46 -0.55 -2.58 16 22 O -0.20 -2.52 15.75 -29.46 -0.46 -2.98 16 23 C 0.46 5.58 7.47 -155.19 -1.16 4.42 16 24 N -0.70 -7.14 5.71 -67.19 -0.38 -7.52 16 25 C 0.08 0.66 10.35 59.85 0.62 1.28 16 26 N -0.50 -6.65 3.63 -9.00 -0.03 -6.68 16 27 H 0.09 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 29 H 0.10 1.42 7.22 -52.48 -0.38 1.04 16 30 H 0.08 1.33 7.70 -51.92 -0.40 0.93 16 31 H 0.10 1.48 5.34 -51.93 -0.28 1.20 16 32 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.05 1.27 7.50 -51.93 -0.39 0.88 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.17 1.98 7.64 -52.49 -0.40 1.58 16 36 H 0.17 1.34 7.70 -52.48 -0.40 0.93 16 37 H 0.42 4.17 5.33 -41.01 -0.22 3.95 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.70 5.19 -51.93 -0.27 0.43 16 40 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -30.68 343.89 -7.87 -38.54 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.37 Total: 2.71 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.77 Total: 4.62 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.04 Total: -49.89 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.92 Total: -17.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.68 -7.87 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456058430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.232 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds