Wall clock time and date at job start Tue Mar 31 2020 13:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00071 * 2 1 4 4 N 1.46499 * 109.47274 * 125.00229 * 3 2 1 5 5 C 1.46506 * 120.00195 * 266.86709 * 4 3 2 6 6 C 1.50702 * 109.46508 * 269.99373 * 5 4 3 7 7 H 1.07996 * 120.00366 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99644 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 119.99957 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47548 * 90.00052 * 10 8 6 12 12 H 1.48501 * 109.46829 * 210.00265 * 10 8 6 13 13 H 1.48499 * 109.47166 * 329.99852 * 10 8 6 14 14 C 1.34775 * 119.99697 * 86.86008 * 4 3 2 15 15 O 1.21519 * 119.99779 * 174.89946 * 14 4 3 16 16 C 1.48146 * 120.00466 * 354.89829 * 14 4 3 17 17 C 1.39135 * 119.68299 * 174.18833 * 16 14 4 18 18 C 1.38795 * 119.22390 * 179.97438 * 17 16 14 19 19 C 1.38287 * 118.58346 * 0.25741 * 18 17 16 20 20 N 1.48020 * 120.35442 * 179.72185 * 19 18 17 21 21 O 1.21800 * 120.00110 * 6.47473 * 20 19 18 22 22 O 1.21799 * 120.00094 * 186.46328 * 20 19 18 23 23 C 1.39462 * 119.29426 * 359.50048 * 19 18 17 24 24 N 1.38979 * 119.63836 * 180.22980 * 23 19 18 25 25 C 1.46506 * 119.99800 * 185.48590 * 24 23 19 26 26 N 1.32083 * 120.71978 * 0.50964 * 23 19 18 27 27 H 1.07994 * 119.99699 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99892 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00258 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46846 * 5.00804 * 3 2 1 31 31 H 1.08996 * 109.47929 * 245.00905 * 3 2 1 32 32 H 1.08998 * 109.47134 * 29.98940 * 5 4 3 33 33 H 1.08996 * 109.47039 * 150.00226 * 5 4 3 34 34 H 0.97003 * 119.99752 * 180.02562 * 9 8 6 35 35 H 1.07996 * 120.38718 * 0.02562 * 17 16 14 36 36 H 1.08003 * 120.70674 * 179.97438 * 18 17 16 37 37 H 0.97000 * 120.00253 * 5.48213 * 24 23 19 38 38 H 1.08998 * 109.47221 * 180.02562 * 25 24 23 39 39 H 1.09007 * 109.46654 * 300.00022 * 25 24 23 40 40 H 1.08994 * 109.47399 * 59.99240 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5815 1.9274 2.4049 6 6 2.9293 3.3937 2.4095 7 1 3.4090 3.8377 1.5498 8 6 2.6341 4.1688 3.5110 9 7 2.0495 3.6282 4.5578 10 14 3.0645 5.9864 3.5165 11 1 1.9246 6.7668 2.9719 12 1 3.3446 6.4245 4.9075 13 1 4.2667 6.2130 2.6747 14 6 4.2289 0.8085 1.0007 15 8 5.0320 0.9128 1.9067 16 6 4.6076 0.1061 -0.2475 17 6 5.9185 -0.3249 -0.4250 18 6 6.2628 -0.9825 -1.5978 19 6 5.2856 -1.1820 -2.5557 20 7 5.6109 -1.8732 -3.8235 21 8 6.7104 -2.3735 -3.9796 22 8 4.7791 -1.9420 -4.7105 23 6 3.9891 -0.7291 -2.3126 24 7 3.0004 -0.9301 -3.2683 25 6 1.6673 -0.3537 -3.0756 26 7 3.6920 -0.1064 -1.1863 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0897 31 1 2.6212 1.4028 -0.9314 32 1 1.5053 1.8089 2.5298 33 1 3.0997 1.4286 3.2238 34 1 1.8415 4.1735 5.3326 35 1 6.6594 -0.1506 0.3413 36 1 7.2733 -1.3269 -1.7607 37 1 3.1928 -1.4519 -4.0630 38 1 1.0322 -0.6161 -3.9216 39 1 1.2305 -0.7475 -2.1578 40 1 1.7474 0.7309 -3.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456058430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:07 Heat of formation + Delta-G solvation = 42.526367 kcal Electronic energy + Delta-G solvation = -27398.346038 eV Core-core repulsion = 23411.159573 eV Total energy + Delta-G solvation = -3987.186466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.50517 -42.06365 -40.27060 -38.10377 -37.52602 -36.69912 -35.23018 -34.27268 -33.73966 -32.06740 -29.93818 -28.19846 -27.63612 -26.82576 -25.43535 -24.10278 -23.75700 -21.70680 -20.72267 -20.51044 -19.96516 -18.93247 -18.77127 -18.63427 -18.25617 -17.56548 -17.10182 -16.58385 -16.26614 -16.02827 -15.72944 -15.53116 -15.22717 -14.69988 -14.47198 -14.39109 -14.09793 -14.00856 -13.35791 -13.19933 -13.01093 -12.90403 -12.70904 -12.58944 -12.42793 -12.33986 -12.25338 -12.21168 -11.74229 -11.72438 -11.52269 -11.48143 -10.65129 -10.64022 -10.14921 -9.59510 -9.21945 -8.23230 -6.37459 -1.53329 -0.13560 -0.03448 0.18966 1.36103 1.38517 1.40631 1.49440 1.53525 1.72904 2.10937 2.37788 2.44045 2.80191 3.07166 3.09711 3.42713 3.50216 3.80202 4.14947 4.28476 4.34446 4.41109 4.48728 4.60178 4.67167 4.84358 4.93825 4.99556 5.02120 5.12329 5.14950 5.18837 5.45579 5.63592 5.71072 5.78755 5.83264 5.99292 6.02169 6.40240 6.51614 6.67968 6.70035 7.08153 7.33841 8.84209 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.003766 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.596392 B = 7432.716969 C = 8278.051790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.138 3.862 4 N -0.569 5.569 5 C 0.263 3.737 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.542 3.458 15 O -0.561 6.561 16 C 0.190 3.810 17 C -0.178 4.178 18 C 0.051 3.949 19 C -0.168 4.168 20 N 0.057 4.943 21 O -0.164 6.164 22 O -0.197 6.197 23 C 0.451 3.549 24 N -0.688 5.688 25 C 0.073 3.927 26 N -0.497 5.497 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.029 0.971 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.173 0.827 36 H 0.199 0.801 37 H 0.428 0.572 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -10.256 -17.548 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.164 4.164 3 C 0.016 3.984 4 N -0.297 5.297 5 C 0.142 3.858 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.198 1.198 14 C 0.328 3.672 15 O -0.440 6.440 16 C 0.048 3.952 17 C -0.203 4.203 18 C 0.025 3.975 19 C -0.262 4.262 20 N 0.565 4.435 21 O -0.379 6.379 22 O -0.397 6.397 23 C 0.207 3.793 24 N -0.329 5.329 25 C -0.070 4.070 26 N -0.220 5.220 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.047 0.953 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.190 0.810 36 H 0.216 0.784 37 H 0.278 0.722 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.599 -9.494 -16.305 18.877 hybrid contribution 1.039 0.293 -0.130 1.087 sum 0.440 -9.201 -16.434 18.840 Atomic orbital electron populations 1.23967 0.95170 1.02694 1.00072 1.22947 0.95815 0.97669 0.99989 1.21139 0.92174 0.95936 0.89151 1.48195 1.12500 1.54202 1.14799 1.18888 0.94672 0.92234 0.80004 1.21631 1.40064 0.94630 1.01892 0.92851 1.25780 0.94653 1.03515 0.94681 1.70037 1.42381 1.38003 1.06011 0.85447 0.78820 0.79249 0.77498 1.18997 1.20611 1.19795 1.18259 0.82728 0.80064 0.86170 1.90778 1.50622 1.60689 1.41912 1.21356 0.91154 0.91382 0.91329 1.21930 0.96580 1.02245 0.99509 1.21540 1.00398 0.87692 0.87863 1.21783 0.97108 1.17071 0.90217 1.43345 1.00111 0.98324 1.01695 1.94543 1.09462 1.47299 1.86596 1.94168 1.43779 1.65711 1.36044 1.18358 0.85363 0.87057 0.88496 1.45763 1.10857 1.54542 1.21692 1.22156 0.81339 0.99106 1.04364 1.68298 1.33702 1.19236 1.00736 0.86850 0.88207 0.88303 0.91086 0.86936 0.95299 0.97637 0.92317 0.80992 0.78434 0.72223 0.87430 0.90982 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.07 13.85 67.78 0.94 -3.14 16 2 C -0.15 -3.87 6.09 25.65 0.16 -3.71 16 3 C 0.14 4.42 5.41 85.63 0.46 4.89 16 4 N -0.57 -23.82 2.45 -833.57 -2.04 -25.86 16 5 C 0.26 13.69 5.11 85.63 0.44 14.13 16 6 C -0.54 -30.41 9.39 25.60 0.24 -30.17 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.74 5.46 84.66 0.46 1.20 16 9 N -0.92 -54.29 13.29 21.45 0.28 -54.01 16 10 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 C 0.54 22.09 7.62 86.88 0.66 22.75 16 15 O -0.56 -27.17 15.96 -3.78 -0.06 -27.23 16 16 C 0.19 5.71 6.57 41.84 0.27 5.99 16 17 C -0.18 -4.28 9.62 22.62 0.22 -4.06 16 18 C 0.05 0.98 9.66 22.41 0.22 1.19 16 19 C -0.17 -3.65 6.89 36.68 0.25 -3.39 16 20 N 0.06 1.28 4.45 -45.73 -0.20 1.08 16 21 O -0.16 -3.83 18.53 18.89 0.35 -3.48 16 22 O -0.20 -4.41 15.75 18.89 0.30 -4.11 16 23 C 0.45 10.18 7.47 133.24 0.99 11.17 16 24 N -0.69 -12.46 5.71 -366.50 -2.09 -14.56 16 25 C 0.07 1.06 10.35 127.77 1.32 2.38 16 26 N -0.50 -12.88 3.63 -182.38 -0.66 -13.54 16 27 H 0.11 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.10 2.23 7.84 -2.91 -0.02 2.20 16 29 H 0.10 2.71 7.22 -2.91 -0.02 2.69 16 30 H 0.07 2.38 7.70 -2.38 -0.02 2.36 16 31 H 0.11 3.31 5.34 -2.39 -0.01 3.29 16 32 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 33 H 0.01 0.33 7.50 -2.39 -0.02 0.31 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.17 4.00 7.64 -2.91 -0.02 3.97 16 36 H 0.20 2.49 7.70 -2.91 -0.02 2.47 16 37 H 0.43 7.26 5.33 -95.66 -0.51 6.75 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.15 5.19 -2.38 -0.01 1.14 16 40 H 0.06 0.97 7.94 -2.39 -0.02 0.95 16 Total: -1.00 -68.20 343.89 5.13 -63.08 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.59 Total: 13.61 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 6.64 Total: 19.24 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -4.71 Total: -106.88 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: 0.59 Total: -34.83 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -68.20 5.13 -63.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456058430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.603 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds