Wall clock time and date at job start Tue Mar 31 2020 13:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99679 * 2 1 4 4 C 1.53000 * 109.47085 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47091 * 64.99817 * 4 3 2 6 6 C 1.36935 * 120.00369 * 270.00208 * 5 4 3 7 7 H 1.08000 * 120.00070 * 141.16156 * 6 5 4 8 8 C 1.38807 * 120.00054 * 321.16561 * 6 5 4 9 9 N 1.31618 * 119.99861 * 339.61888 * 8 6 5 10 10 Si 1.86802 * 120.00266 * 159.62741 * 8 6 5 11 11 H 1.48495 * 109.47036 * 89.99299 * 10 8 6 12 12 H 1.48498 * 109.46860 * 209.99796 * 10 8 6 13 13 H 1.48506 * 109.46599 * 329.99715 * 10 8 6 14 14 C 1.46502 * 119.99489 * 90.00370 * 5 4 3 15 15 C 1.50703 * 109.46993 * 265.34576 * 14 5 4 16 16 N 1.30119 * 124.94938 * 275.26803 * 15 14 5 17 17 C 1.35785 * 109.64148 * 180.15018 * 16 15 14 18 18 C 1.39734 * 133.59729 * 179.97438 * 17 16 15 19 19 C 1.36604 * 119.88826 * 179.70802 * 18 17 16 20 20 C 1.38777 * 120.66615 * 359.94226 * 19 18 17 21 21 N 1.48018 * 119.77534 * 180.02562 * 20 19 18 22 22 O 1.21798 * 119.99762 * 180.02562 * 21 20 19 23 23 O 1.21799 * 119.99840 * 0.02562 * 21 20 19 24 24 C 1.37860 * 120.45130 * 0.05738 * 20 19 18 25 25 C 1.38835 * 119.69280 * 359.96843 * 24 20 19 26 26 N 1.36031 * 124.95455 * 95.00246 * 15 14 5 27 27 H 0.97001 * 126.34358 * 359.97438 * 26 15 14 28 28 H 1.08994 * 109.46844 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46674 * 299.99780 * 1 2 3 30 30 H 1.09005 * 109.47036 * 59.99631 * 1 2 3 31 31 H 1.09004 * 109.47311 * 60.00616 * 3 2 1 32 32 H 1.08995 * 109.47877 * 300.00020 * 3 2 1 33 33 H 1.08997 * 109.47353 * 305.00335 * 4 3 2 34 34 H 1.08998 * 109.47511 * 185.00024 * 4 3 2 35 35 H 0.96999 * 120.00029 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.47019 * 145.34820 * 14 5 4 37 37 H 1.09002 * 109.47253 * 25.34472 * 14 5 4 38 38 H 1.08001 * 120.05897 * 359.65006 * 18 17 16 39 39 H 1.07997 * 119.66657 * 179.97438 * 19 18 17 40 40 H 1.07997 * 120.15520 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.0968 -0.7969 -1.3370 7 1 3.8023 -1.3104 -2.2403 8 6 4.5980 -1.5170 -0.2613 9 7 5.3171 -0.9101 0.6590 10 14 4.2523 -3.3473 -0.1201 11 1 5.3247 -4.1082 -0.8100 12 1 4.2139 -3.7345 1.3130 13 1 2.9434 -3.6538 -0.7510 14 6 4.2863 1.4008 -2.4148 15 6 3.0718 1.4999 -3.3015 16 7 2.7408 0.6312 -4.2120 17 6 1.5965 1.0274 -4.8263 18 6 0.8158 0.4861 -5.8510 19 6 -0.3159 1.1334 -6.2589 20 6 -0.7020 2.3266 -5.6646 21 7 -1.9323 3.0111 -6.1217 22 8 -2.2747 4.0587 -5.6034 23 8 -2.6022 2.5266 -7.0162 24 6 0.0528 2.8792 -4.6520 25 6 1.2064 2.2358 -4.2246 26 7 2.1590 2.5077 -3.2632 27 1 2.1748 3.2754 -2.6706 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8515 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 5.6670 -1.4132 1.4109 36 1 5.1090 0.9549 -2.9738 37 1 4.5732 2.3973 -2.0790 38 1 1.1070 -0.4419 -6.3203 39 1 -0.9165 0.7121 -7.0514 40 1 -0.2519 3.8081 -4.1932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459534753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:59 Heat of formation + Delta-G solvation = 34.276872 kcal Electronic energy + Delta-G solvation = -27194.732789 eV Core-core repulsion = 23207.188598 eV Total energy + Delta-G solvation = -3987.544191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.57422 -43.03654 -39.12952 -38.60201 -37.67790 -37.05709 -34.49202 -33.58535 -31.98962 -31.53678 -30.56339 -28.46512 -27.26647 -26.71999 -25.11353 -23.85630 -23.20484 -22.67700 -21.75036 -20.53501 -19.80050 -18.98391 -18.62244 -18.35947 -17.92514 -17.51610 -16.85989 -16.56306 -16.34320 -16.09334 -15.75244 -15.46595 -15.32491 -15.12044 -14.82939 -14.36978 -13.52416 -13.46508 -13.27157 -13.10266 -12.81961 -12.74880 -12.69444 -12.65596 -12.44758 -12.33539 -12.29378 -12.06088 -11.99984 -11.96654 -11.61080 -11.15833 -10.53546 -10.44371 -9.80611 -9.64176 -8.63332 -7.84015 -5.43034 -1.31744 -0.12700 0.26051 0.29196 1.43813 1.48273 1.51104 1.59487 1.74354 2.40836 2.56879 2.97785 3.10789 3.27280 3.37663 3.55254 3.65191 3.70277 3.84469 4.02440 4.20659 4.27297 4.38483 4.44385 4.47225 4.61526 4.61878 4.68608 4.69088 4.76526 4.88505 4.91322 4.99858 5.03183 5.22813 5.44217 5.71559 5.81022 6.20976 6.40959 6.52168 6.60695 6.76225 7.18792 7.80686 8.27579 9.15372 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.003667 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.157698 B = 7634.806370 C = 7777.513856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.049 3.951 4 C 0.136 3.864 5 N -0.569 5.569 6 C -0.238 4.238 7 H 0.044 0.956 8 C -0.013 4.013 9 N -0.911 5.911 10 Si 0.940 3.060 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.287 1.287 14 C 0.202 3.798 15 C 0.328 3.672 16 N -0.525 5.525 17 C 0.079 3.921 18 C -0.067 4.067 19 C -0.069 4.069 20 C -0.054 4.054 21 N 0.040 4.960 22 O -0.185 6.185 23 O -0.172 6.172 24 C -0.016 4.016 25 C 0.025 3.975 26 N -0.575 5.575 27 H 0.440 0.560 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.175 0.825 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 9.965 -6.980 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C -0.029 4.029 4 C 0.011 3.989 5 N -0.287 5.287 6 C -0.369 4.369 7 H 0.062 0.938 8 C -0.211 4.211 9 N -0.555 5.555 10 Si 0.770 3.230 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.213 1.213 14 C 0.073 3.927 15 C 0.058 3.942 16 N -0.245 5.245 17 C -0.043 4.043 18 C -0.087 4.087 19 C -0.091 4.091 20 C -0.140 4.140 21 N 0.555 4.445 22 O -0.397 6.397 23 O -0.386 6.386 24 C -0.037 4.037 25 C -0.087 4.087 26 N -0.187 5.187 27 H 0.282 0.718 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.182 0.818 39 H 0.192 0.808 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.922 8.671 -6.776 13.000 hybrid contribution -1.233 0.218 0.670 1.420 sum -8.154 8.890 -6.105 13.520 Atomic orbital electron populations 1.22734 0.81990 1.02356 0.99529 1.88168 1.19091 1.29007 1.95114 1.23346 0.97209 0.83984 0.98390 1.21187 0.89164 0.97454 0.91143 1.43740 1.75021 1.02520 1.07436 1.18810 1.34762 0.82791 1.00514 0.93824 1.25442 0.96603 1.00023 0.99007 1.70027 1.34953 1.36406 1.14097 0.85724 0.77706 0.83225 0.76303 1.21121 1.21917 1.21272 1.19829 0.87889 0.97785 0.87232 1.26158 0.93546 0.81799 0.92660 1.70692 1.14258 1.27853 1.11731 1.20005 0.93967 0.92994 0.97363 1.20141 0.92478 1.01087 0.94995 1.20499 0.96613 0.91772 1.00237 1.20575 0.89862 0.98813 1.04727 1.43612 1.01856 1.00038 0.99004 1.94512 1.75211 1.11378 1.58556 1.94514 1.52758 1.68526 1.22840 1.19631 0.90161 1.00159 0.93791 1.18436 0.94617 0.98988 0.96610 1.43234 1.20117 1.23982 1.31370 0.71771 0.90380 0.92997 0.95227 0.93139 0.94623 0.91167 0.90655 0.94047 0.89916 0.87630 0.81818 0.80776 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.20 16 2 O -0.40 -16.16 10.18 -148.98 -1.52 -17.68 16 3 C 0.05 1.67 6.28 71.98 0.45 2.12 16 4 C 0.14 5.28 5.76 86.38 0.50 5.78 16 5 N -0.57 -23.96 2.39 -706.33 -1.69 -25.65 16 6 C -0.24 -12.17 8.95 84.03 0.75 -11.42 16 7 H 0.04 2.41 7.91 -2.91 -0.02 2.39 16 8 C -0.01 -0.69 4.97 84.86 0.42 -0.27 16 9 N -0.91 -49.39 11.50 21.65 0.25 -49.14 16 10 Si 0.94 44.88 29.60 68.60 2.03 46.91 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 C 0.20 6.67 6.34 85.63 0.54 7.21 16 15 C 0.33 10.25 7.33 137.92 1.01 11.26 16 16 N -0.52 -18.75 11.27 -179.96 -2.03 -20.78 16 17 C 0.08 2.39 7.23 39.45 0.29 2.68 16 18 C -0.07 -1.63 10.05 22.25 0.22 -1.41 16 19 C -0.07 -1.49 9.47 22.02 0.21 -1.29 16 20 C -0.05 -1.29 6.85 36.41 0.25 -1.04 16 21 N 0.04 1.05 4.45 -46.37 -0.21 0.85 16 22 O -0.19 -5.04 18.43 18.89 0.35 -4.70 16 23 O -0.17 -4.65 18.42 18.89 0.35 -4.30 16 24 C -0.02 -0.35 9.57 22.32 0.21 -0.14 16 25 C 0.03 0.64 7.31 38.86 0.28 0.93 16 26 N -0.57 -13.64 5.31 -179.23 -0.95 -14.59 16 27 H 0.44 7.19 8.86 -92.71 -0.82 6.37 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.04 1.07 6.76 -2.39 -0.02 1.06 16 33 H 0.07 3.38 5.57 -2.39 -0.01 3.36 16 34 H 0.08 2.40 7.86 -2.39 -0.02 2.38 16 35 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 36 H 0.08 2.94 8.08 -2.39 -0.02 2.92 16 37 H 0.11 2.59 7.84 -2.39 -0.02 2.57 16 38 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.17 2.96 7.58 -2.91 -0.02 2.93 16 40 H 0.17 2.97 7.59 -2.91 -0.02 2.95 16 Total: -1.00 -65.94 350.98 3.25 -62.69 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.27 Total: 9.77 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.39 Total: 16.62 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.63 Total: -109.31 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.82 Total: -26.68 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.94 3.25 -62.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459534753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.968 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds