Wall clock time and date at job start Tue Mar 31 2020 13:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99498 * 2 1 4 4 C 1.53004 * 109.46696 * 184.95052 * 3 2 1 5 5 N 1.46497 * 109.47152 * 62.86954 * 4 3 2 6 6 C 1.36945 * 120.00069 * 84.60760 * 5 4 3 7 7 H 1.07997 * 120.00015 * 169.90288 * 6 5 4 8 8 C 1.38809 * 119.99805 * 349.89805 * 6 5 4 9 9 N 1.31614 * 120.00317 * 0.67841 * 8 6 5 10 10 Si 1.86795 * 119.99819 * 180.67303 * 8 6 5 11 11 H 1.48504 * 109.47285 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47332 * 120.00212 * 10 8 6 13 13 H 1.48506 * 109.47546 * 240.00370 * 10 8 6 14 14 C 1.46502 * 120.00004 * 264.60605 * 5 4 3 15 15 C 1.50701 * 109.47243 * 265.08554 * 14 5 4 16 16 C 1.34549 * 126.07807 * 93.16032 * 15 14 5 17 17 O 1.34778 * 107.26834 * 179.88138 * 16 15 14 18 18 C 1.34423 * 107.69220 * 0.38370 * 17 16 15 19 19 C 1.47840 * 125.72247 * 179.75666 * 18 17 16 20 20 C 1.39592 * 120.12751 * 184.81770 * 19 18 17 21 21 C 1.37958 * 119.90015 * 179.74747 * 20 19 18 22 22 C 1.38336 * 120.17063 * 0.53281 * 21 20 19 23 23 C 1.38551 * 120.26876 * 359.74416 * 22 21 20 24 24 F 1.35094 * 119.95148 * 179.97438 * 23 22 21 25 25 C 1.38208 * 120.08996 * 359.97438 * 23 22 21 26 26 N 1.31218 * 108.55072 * 359.76449 * 18 17 16 27 27 H 1.08999 * 109.47254 * 64.95088 * 1 2 3 28 28 H 1.09007 * 109.46517 * 184.95373 * 1 2 3 29 29 H 1.08995 * 109.46913 * 304.94663 * 1 2 3 30 30 H 1.09001 * 109.47369 * 64.95406 * 3 2 1 31 31 H 1.09004 * 109.47513 * 304.94741 * 3 2 1 32 32 H 1.08994 * 109.47222 * 302.86421 * 4 3 2 33 33 H 1.09004 * 109.46573 * 182.86556 * 4 3 2 34 34 H 0.97002 * 120.00319 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.47033 * 25.08403 * 14 5 4 36 36 H 1.09000 * 109.47082 * 145.08373 * 14 5 4 37 37 H 1.08000 * 126.36356 * 0.03075 * 16 15 14 38 38 H 1.08004 * 120.05323 * 0.02562 * 20 19 18 39 39 H 1.08005 * 119.91023 * 180.27721 * 21 20 19 40 40 H 1.08004 * 119.86320 * 179.71379 * 22 21 20 41 41 H 1.08004 * 120.08660 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5305 1.1869 -0.1245 5 7 3.8684 0.5647 -1.4070 6 6 3.9596 1.3321 -2.5375 7 1 4.3647 0.9102 -3.4453 8 6 3.5314 2.6523 -2.5165 9 7 3.0500 3.1705 -1.4065 10 14 3.6384 3.6936 -4.0636 11 1 4.2113 2.8823 -5.1677 12 1 2.2795 4.1566 -4.4438 13 1 4.5090 4.8696 -3.8097 14 6 4.1087 -0.8787 -1.4801 15 6 5.5871 -1.1481 -1.3671 16 6 6.2587 -1.4192 -0.2332 17 8 7.5521 -1.5983 -0.5674 18 6 7.6582 -1.4268 -1.8964 19 6 8.9059 -1.5280 -2.6829 20 6 8.9009 -1.2288 -4.0464 21 6 10.0690 -1.3197 -4.7747 22 6 11.2426 -1.7171 -4.1597 23 6 11.2545 -2.0213 -2.8081 24 9 12.4041 -2.4093 -2.2141 25 6 10.0918 -1.9284 -2.0667 26 7 6.4685 -1.1545 -2.3785 27 1 -0.3634 0.4351 -0.9310 28 1 -0.3632 -1.0239 0.0887 29 1 -0.3633 0.5886 0.8423 30 1 1.7605 1.8144 0.9310 31 1 1.6201 1.8769 -0.8424 32 1 3.9149 0.5729 0.6898 33 1 3.9777 2.1797 -0.0733 34 1 2.7504 4.0930 -1.3920 35 1 3.5854 -1.3759 -0.6635 36 1 3.7415 -1.2603 -2.4328 37 1 5.8390 -1.4839 0.7598 38 1 7.9848 -0.9222 -4.5295 39 1 10.0662 -1.0839 -5.8287 40 1 12.1533 -1.7911 -4.7357 41 1 10.1012 -2.1652 -1.0129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459541309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:50 Heat of formation + Delta-G solvation = -0.498023 kcal Electronic energy + Delta-G solvation = -26328.233330 eV Core-core repulsion = 22319.261225 eV Total energy + Delta-G solvation = -4008.972105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.06612 -42.82113 -38.99167 -37.14262 -35.62609 -34.22508 -32.51973 -31.27913 -30.65675 -29.25561 -28.37913 -25.84191 -25.51388 -23.97468 -23.15227 -22.71766 -21.11819 -20.78550 -20.00602 -18.00998 -16.82333 -16.42506 -16.32074 -16.28692 -16.22336 -15.73360 -15.36007 -14.93885 -14.74936 -14.45412 -14.14105 -13.92293 -13.77401 -13.44623 -13.27573 -13.15337 -12.63345 -12.44638 -11.98695 -11.59829 -11.50487 -11.38533 -10.98910 -10.87106 -10.73637 -10.71006 -10.50789 -10.08936 -9.94156 -9.83822 -9.71993 -9.53279 -8.99733 -8.86315 -8.25534 -7.99882 -6.86944 -5.66431 -3.15561 0.55347 1.00282 2.06413 2.93645 3.09202 3.38165 3.45657 3.48189 3.63864 3.86176 4.30040 4.50897 4.64347 4.74983 4.93786 4.99539 5.11671 5.28953 5.38565 5.45955 5.55307 5.69343 5.77861 5.85718 5.92261 5.99753 6.03718 6.11883 6.19532 6.21882 6.32792 6.52941 6.62164 6.63760 6.68449 6.75706 6.82287 7.09687 7.58607 7.74676 7.86438 8.18036 8.30860 8.43615 9.26984 9.83523 10.26520 11.28123 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.003427 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.513004 B = 8168.017347 C = 9489.887613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.405 6.405 3 C 0.058 3.942 4 C 0.179 3.821 5 N -0.583 5.583 6 C -0.216 4.216 7 H 0.079 0.921 8 C -0.018 4.018 9 N -0.924 5.924 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.293 1.293 14 C 0.223 3.777 15 C 0.002 3.998 16 C -0.077 4.077 17 O -0.205 6.205 18 C 0.194 3.806 19 C 0.033 3.967 20 C -0.084 4.084 21 C -0.090 4.090 22 C -0.145 4.145 23 C 0.096 3.904 24 F -0.139 7.139 25 C -0.133 4.133 26 N -0.437 5.437 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.024 0.976 30 H 0.010 0.990 31 H 0.092 0.908 32 H 0.004 0.996 33 H 0.116 0.884 34 H 0.249 0.751 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.213 0.787 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 -9.522 -0.543 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.324 6.324 3 C -0.019 4.019 4 C 0.054 3.946 5 N -0.302 5.302 6 C -0.345 4.345 7 H 0.097 0.903 8 C -0.211 4.211 9 N -0.575 5.575 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.220 1.220 14 C 0.094 3.906 15 C -0.123 4.123 16 C -0.148 4.148 17 O -0.092 6.092 18 C -0.009 4.009 19 C 0.032 3.968 20 C -0.103 4.103 21 C -0.108 4.108 22 C -0.165 4.165 23 C 0.077 3.923 24 F -0.117 7.117 25 C -0.154 4.154 26 N -0.167 5.167 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.109 0.891 32 H 0.023 0.977 33 H 0.133 0.867 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.229 0.771 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.383 -9.412 -1.126 13.338 hybrid contribution 0.057 0.821 0.353 0.896 sum 9.441 -8.591 -0.773 12.788 Atomic orbital electron populations 1.22457 0.84004 1.00352 0.98874 1.87805 1.17262 1.32054 1.95297 1.24055 0.97049 0.81314 0.99462 1.21164 0.91033 0.98853 0.83599 1.44091 1.79121 1.01022 1.06012 1.19561 1.32061 0.92975 0.89943 0.90304 1.24779 1.01054 0.97665 0.97602 1.70068 1.48952 1.13849 1.24679 0.86003 0.77084 0.80127 0.82383 1.20482 1.21892 1.21979 1.19179 0.83662 0.86571 1.01191 1.23672 1.01053 0.99974 0.87598 1.24937 0.79725 1.08399 1.01705 1.84397 1.30112 1.68879 1.25799 1.23508 0.94383 1.04113 0.78922 1.17012 0.87102 1.00641 0.92088 1.21362 0.99724 0.97324 0.91905 1.20976 0.91110 0.98170 1.00561 1.21283 1.00184 1.01974 0.93029 1.17406 0.81838 1.01555 0.91490 1.91505 1.47417 1.88697 1.84120 1.21150 0.90870 1.02131 1.01215 1.70578 0.98255 1.14813 1.33046 0.95097 0.91590 0.95732 0.97201 0.89077 0.97745 0.86683 0.94002 0.91075 0.92072 0.77092 0.83401 0.84102 0.84441 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 11.01 101.05 1.11 1.81 16 2 O -0.40 -8.60 10.14 -35.23 -0.36 -8.95 16 3 C 0.06 1.33 5.47 37.16 0.20 1.54 16 4 C 0.18 4.21 5.35 -4.04 -0.02 4.19 16 5 N -0.58 -14.11 2.45 -174.61 -0.43 -14.54 16 6 C -0.22 -5.74 9.77 -15.06 -0.15 -5.89 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 8 C -0.02 -0.47 5.27 -17.43 -0.09 -0.57 16 9 N -0.92 -24.78 7.24 55.49 0.40 -24.38 16 10 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 C 0.22 4.64 6.03 -5.19 -0.03 4.61 16 15 C 0.00 0.05 6.65 -82.88 -0.55 -0.50 16 16 C -0.08 -1.31 12.08 29.43 0.36 -0.95 16 17 O -0.21 -3.51 10.53 4.07 0.04 -3.47 16 18 C 0.19 3.40 7.89 -13.89 -0.11 3.29 16 19 C 0.03 0.48 5.87 -104.99 -0.62 -0.14 16 20 C -0.08 -1.08 9.69 -39.18 -0.38 -1.46 16 21 C -0.09 -0.89 10.03 -39.65 -0.40 -1.29 16 22 C -0.15 -1.41 10.02 -39.43 -0.40 -1.81 16 23 C 0.10 1.11 7.29 -39.48 -0.29 0.82 16 24 F -0.14 -1.62 17.26 2.25 0.04 -1.59 16 25 C -0.13 -1.69 9.69 -39.12 -0.38 -2.07 16 26 N -0.44 -8.70 10.92 -7.97 -0.09 -8.79 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 2.37 5.99 -51.93 -0.31 2.06 16 32 H 0.00 0.09 8.03 -51.93 -0.42 -0.32 16 33 H 0.12 3.02 5.90 -51.93 -0.31 2.72 16 34 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.07 1.37 7.71 -51.93 -0.40 0.97 16 36 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 37 H 0.21 2.83 8.06 -52.49 -0.42 2.41 16 38 H 0.15 1.99 7.84 -52.48 -0.41 1.58 16 39 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.14 1.68 7.91 -52.48 -0.42 1.27 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -29.50 355.87 -6.97 -36.47 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.19 Total: 1.62 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.74 Total: 1.59 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.11 Total: -47.71 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.31 Total: -12.43 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.50 -6.97 -36.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459541309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.971 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds