Wall clock time and date at job start Tue Mar 31 2020 13:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99498 * 2 1 4 4 C 1.53004 * 109.46696 * 184.95052 * 3 2 1 5 5 N 1.46497 * 109.47152 * 62.86954 * 4 3 2 6 6 C 1.36945 * 120.00069 * 84.60760 * 5 4 3 7 7 H 1.07997 * 120.00015 * 169.90288 * 6 5 4 8 8 C 1.38809 * 119.99805 * 349.89805 * 6 5 4 9 9 N 1.31614 * 120.00317 * 0.67841 * 8 6 5 10 10 Si 1.86795 * 119.99819 * 180.67303 * 8 6 5 11 11 H 1.48504 * 109.47285 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47332 * 120.00212 * 10 8 6 13 13 H 1.48506 * 109.47546 * 240.00370 * 10 8 6 14 14 C 1.46502 * 120.00004 * 264.60605 * 5 4 3 15 15 C 1.50701 * 109.47243 * 265.08554 * 14 5 4 16 16 C 1.34549 * 126.07807 * 93.16032 * 15 14 5 17 17 O 1.34778 * 107.26834 * 179.88138 * 16 15 14 18 18 C 1.34423 * 107.69220 * 0.38370 * 17 16 15 19 19 C 1.47840 * 125.72247 * 179.75666 * 18 17 16 20 20 C 1.39592 * 120.12751 * 184.81770 * 19 18 17 21 21 C 1.37958 * 119.90015 * 179.74747 * 20 19 18 22 22 C 1.38336 * 120.17063 * 0.53281 * 21 20 19 23 23 C 1.38551 * 120.26876 * 359.74416 * 22 21 20 24 24 F 1.35094 * 119.95148 * 179.97438 * 23 22 21 25 25 C 1.38208 * 120.08996 * 359.97438 * 23 22 21 26 26 N 1.31218 * 108.55072 * 359.76449 * 18 17 16 27 27 H 1.08999 * 109.47254 * 64.95088 * 1 2 3 28 28 H 1.09007 * 109.46517 * 184.95373 * 1 2 3 29 29 H 1.08995 * 109.46913 * 304.94663 * 1 2 3 30 30 H 1.09001 * 109.47369 * 64.95406 * 3 2 1 31 31 H 1.09004 * 109.47513 * 304.94741 * 3 2 1 32 32 H 1.08994 * 109.47222 * 302.86421 * 4 3 2 33 33 H 1.09004 * 109.46573 * 182.86556 * 4 3 2 34 34 H 0.97002 * 120.00319 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.47033 * 25.08403 * 14 5 4 36 36 H 1.09000 * 109.47082 * 145.08373 * 14 5 4 37 37 H 1.08000 * 126.36356 * 0.03075 * 16 15 14 38 38 H 1.08004 * 120.05323 * 0.02562 * 20 19 18 39 39 H 1.08005 * 119.91023 * 180.27721 * 21 20 19 40 40 H 1.08004 * 119.86320 * 179.71379 * 22 21 20 41 41 H 1.08004 * 120.08660 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5305 1.1869 -0.1245 5 7 3.8684 0.5647 -1.4070 6 6 3.9596 1.3321 -2.5375 7 1 4.3647 0.9102 -3.4453 8 6 3.5314 2.6523 -2.5165 9 7 3.0500 3.1705 -1.4065 10 14 3.6384 3.6936 -4.0636 11 1 4.2113 2.8823 -5.1677 12 1 2.2795 4.1566 -4.4438 13 1 4.5090 4.8696 -3.8097 14 6 4.1087 -0.8787 -1.4801 15 6 5.5871 -1.1481 -1.3671 16 6 6.2587 -1.4192 -0.2332 17 8 7.5521 -1.5983 -0.5674 18 6 7.6582 -1.4268 -1.8964 19 6 8.9059 -1.5280 -2.6829 20 6 8.9009 -1.2288 -4.0464 21 6 10.0690 -1.3197 -4.7747 22 6 11.2426 -1.7171 -4.1597 23 6 11.2545 -2.0213 -2.8081 24 9 12.4041 -2.4093 -2.2141 25 6 10.0918 -1.9284 -2.0667 26 7 6.4685 -1.1545 -2.3785 27 1 -0.3634 0.4351 -0.9310 28 1 -0.3632 -1.0239 0.0887 29 1 -0.3633 0.5886 0.8423 30 1 1.7605 1.8144 0.9310 31 1 1.6201 1.8769 -0.8424 32 1 3.9149 0.5729 0.6898 33 1 3.9777 2.1797 -0.0733 34 1 2.7504 4.0930 -1.3920 35 1 3.5854 -1.3759 -0.6635 36 1 3.7415 -1.2603 -2.4328 37 1 5.8390 -1.4839 0.7598 38 1 7.9848 -0.9222 -4.5295 39 1 10.0662 -1.0839 -5.8287 40 1 12.1533 -1.7911 -4.7357 41 1 10.1012 -2.1652 -1.0129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459541309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:49 Heat of formation + Delta-G solvation = -18.385846 kcal Electronic energy + Delta-G solvation = -26329.009005 eV Core-core repulsion = 22319.261225 eV Total energy + Delta-G solvation = -4009.747779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.96569 -44.18985 -39.92289 -38.87234 -37.30578 -35.74286 -33.81218 -32.86199 -31.68993 -30.80931 -29.93084 -27.50225 -27.05434 -25.08147 -24.80816 -23.86023 -22.60289 -22.12670 -21.60196 -19.18409 -18.61353 -17.69697 -17.64571 -17.26867 -17.20412 -17.11691 -16.65610 -16.60722 -16.22240 -15.86886 -15.68297 -15.28885 -15.20999 -14.91417 -14.73794 -14.24289 -13.97531 -13.60254 -13.35970 -13.19681 -12.91216 -12.81859 -12.57557 -12.41441 -12.37168 -12.30953 -12.16366 -11.84395 -11.74695 -11.53915 -11.42756 -10.73654 -10.66791 -10.04866 -9.93292 -9.25832 -8.77604 -7.67504 -5.17109 -0.47372 0.09425 0.81960 1.46292 1.48911 1.57608 1.68845 1.77280 2.54722 2.60894 2.76095 3.27279 3.35946 3.38529 3.72149 3.79711 3.90710 4.02572 4.05455 4.13248 4.26064 4.50192 4.57332 4.66532 4.70254 4.78384 4.83013 4.86879 4.88948 4.95659 5.00284 5.01031 5.08596 5.20344 5.28212 5.33131 5.38496 5.60150 5.75684 5.80078 5.91130 6.38790 6.69999 6.80068 7.26747 7.91722 8.30039 9.23829 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.003427 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.513004 B = 8168.017347 C = 9489.887613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.417 6.417 3 C 0.074 3.926 4 C 0.183 3.817 5 N -0.595 5.595 6 C -0.225 4.225 7 H 0.065 0.935 8 C -0.059 4.059 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.296 1.296 14 C 0.231 3.769 15 C -0.030 4.030 16 C -0.063 4.063 17 O -0.205 6.205 18 C 0.198 3.802 19 C 0.003 3.997 20 C -0.093 4.093 21 C -0.078 4.078 22 C -0.126 4.126 23 C 0.090 3.910 24 F -0.139 7.139 25 C -0.134 4.134 26 N -0.474 5.474 27 H 0.022 0.978 28 H 0.096 0.904 29 H 0.040 0.960 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.247 0.753 38 H 0.134 0.866 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.850 -10.400 -0.825 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.336 6.336 3 C -0.003 4.003 4 C 0.058 3.942 5 N -0.315 5.315 6 C -0.355 4.355 7 H 0.082 0.918 8 C -0.251 4.251 9 N -0.584 5.584 10 Si 0.794 3.206 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.223 1.223 14 C 0.104 3.896 15 C -0.154 4.154 16 C -0.133 4.133 17 O -0.091 6.091 18 C -0.005 4.005 19 C 0.001 3.999 20 C -0.113 4.113 21 C -0.096 4.096 22 C -0.145 4.145 23 C 0.071 3.929 24 F -0.118 7.118 25 C -0.155 4.155 26 N -0.204 5.204 27 H 0.040 0.960 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.263 0.737 38 H 0.152 0.848 39 H 0.193 0.807 40 H 0.190 0.810 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.835 -10.317 -1.403 15.027 hybrid contribution -0.320 1.002 0.407 1.128 sum 10.514 -9.315 -0.997 14.082 Atomic orbital electron populations 1.22683 0.81741 1.02630 0.99093 1.87754 1.19689 1.30837 1.95353 1.23612 0.96594 0.81790 0.98353 1.20952 0.91540 0.97676 0.84021 1.44176 1.79630 1.02184 1.05508 1.19567 1.32000 0.93518 0.90417 0.91753 1.25337 1.01455 0.98513 0.99755 1.70252 1.49190 1.13527 1.25431 0.85212 0.76651 0.78592 0.80096 1.20281 1.21944 1.22297 1.19090 0.84783 0.84830 1.00930 1.23402 1.00529 1.02606 0.88827 1.25449 0.79318 1.06311 1.02256 1.84422 1.30124 1.68826 1.25765 1.24106 0.94814 1.02498 0.79089 1.17132 0.86575 1.03482 0.92683 1.21433 1.00577 0.97729 0.91539 1.21319 0.89780 0.96612 1.01892 1.21685 1.01301 0.99241 0.92261 1.17526 0.81353 1.01808 0.92236 1.91509 1.47250 1.88735 1.84300 1.21156 0.90826 1.01970 1.01514 1.70502 0.99344 1.16681 1.33909 0.95961 0.88517 0.94184 0.96416 0.92349 0.95727 0.89634 0.94554 0.89536 0.93620 0.73693 0.84828 0.80670 0.80964 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 11.01 113.37 1.25 2.40 16 2 O -0.42 -17.31 10.14 -148.98 -1.51 -18.82 16 3 C 0.07 3.40 5.47 71.98 0.39 3.79 16 4 C 0.18 8.70 5.35 86.38 0.46 9.16 16 5 N -0.59 -29.29 2.45 -706.34 -1.73 -31.03 16 6 C -0.23 -12.28 9.77 84.03 0.82 -11.46 16 7 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 8 C -0.06 -3.19 5.27 84.86 0.45 -2.74 16 9 N -0.93 -51.08 7.24 21.65 0.16 -50.92 16 10 Si 0.96 45.43 29.55 68.60 2.03 47.46 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 14 C 0.23 9.78 6.03 85.63 0.52 10.29 16 15 C -0.03 -1.18 6.65 41.36 0.27 -0.91 16 16 C -0.06 -2.08 12.08 66.97 0.81 -1.27 16 17 O -0.20 -6.94 10.53 -8.36 -0.09 -7.03 16 18 C 0.20 7.06 7.89 87.33 0.69 7.75 16 19 C 0.00 0.07 5.87 -20.10 -0.12 -0.04 16 20 C -0.09 -2.33 9.69 22.53 0.22 -2.11 16 21 C -0.08 -1.32 10.03 22.23 0.22 -1.10 16 22 C -0.13 -1.99 10.02 22.37 0.22 -1.77 16 23 C 0.09 1.86 7.29 22.34 0.16 2.03 16 24 F -0.14 -2.94 17.26 44.97 0.78 -2.17 16 25 C -0.13 -3.28 9.69 22.57 0.22 -3.07 16 26 N -0.47 -19.43 10.92 -293.19 -3.20 -22.63 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 3.09 5.99 -2.38 -0.01 3.08 16 32 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 33 H 0.09 4.59 5.90 -2.39 -0.01 4.58 16 34 H 0.24 13.15 8.31 -92.71 -0.77 12.37 16 35 H 0.09 3.30 7.71 -2.39 -0.02 3.28 16 36 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 37 H 0.25 6.05 8.06 -2.91 -0.02 6.02 16 38 H 0.13 3.69 7.84 -2.91 -0.02 3.67 16 39 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.14 3.32 7.91 -2.91 -0.02 3.30 16 Total: -1.00 -65.28 355.87 4.07 -61.21 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.05 Total: 12.98 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.59 Total: 10.95 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -4.78 Total: -104.58 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.60 Total: -25.85 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -65.28 4.07 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459541309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.825 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds