Wall clock time and date at job start Tue Mar 31 2020 13:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35802 * 117.00169 * 2 1 4 4 C 1.38968 * 119.88670 * 179.97438 * 3 2 1 5 5 C 1.37725 * 120.11344 * 179.97438 * 4 3 2 6 6 C 1.39921 * 119.88788 * 359.97438 * 5 4 3 7 7 C 1.47085 * 120.11444 * 180.02562 * 6 5 4 8 8 C 1.34897 * 119.99822 * 180.02562 * 7 6 5 9 9 C 1.46380 * 119.99923 * 180.02562 * 8 7 6 10 10 N 1.31595 * 125.21272 * 355.04446 * 9 8 7 11 11 C 1.35471 * 109.66876 * 180.23600 * 10 9 8 12 12 C 1.39914 * 133.21461 * 179.76007 * 11 10 9 13 13 C 1.37645 * 119.78147 * 179.97438 * 12 11 10 14 14 C 1.38772 * 120.54090 * 0.02562 * 13 12 11 15 15 C 1.37969 * 120.46680 * 359.97438 * 14 13 12 16 16 C 1.38730 * 119.86583 * 359.97438 * 15 14 13 17 17 N 1.37679 * 125.21830 * 174.86387 * 9 8 7 18 18 C 1.37001 * 126.45062 * 0.03664 * 17 9 8 19 19 H 1.08004 * 119.99793 * 327.86221 * 18 17 9 20 20 C 1.39017 * 120.00136 * 147.86480 * 18 17 9 21 21 N 1.31332 * 119.99962 * 335.15503 * 20 18 17 22 22 Si 1.86801 * 120.00251 * 155.15878 * 20 18 17 23 23 H 1.48499 * 109.47467 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46990 * 299.99888 * 22 20 18 25 25 H 1.48501 * 109.47365 * 59.99792 * 22 20 18 26 26 C 1.39922 * 119.76967 * 0.28114 * 6 5 4 27 27 C 1.37729 * 119.88607 * 359.46048 * 26 6 5 28 28 H 1.09006 * 109.47424 * 300.00104 * 1 2 3 29 29 H 1.09004 * 109.47479 * 60.00091 * 1 2 3 30 30 H 1.09003 * 109.47449 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.93967 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.05290 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.00275 * 359.97438 * 7 6 5 34 34 H 1.07995 * 119.99903 * 359.97438 * 8 7 6 35 35 H 1.08004 * 120.10748 * 0.02562 * 12 11 10 36 36 H 1.07999 * 119.73016 * 180.02562 * 13 12 11 37 37 H 1.07995 * 119.76513 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.06707 * 179.97438 * 15 14 13 39 39 H 0.97001 * 120.00080 * 354.10925 * 21 20 18 40 40 H 1.08001 * 120.05935 * 179.70646 * 26 6 5 41 41 H 1.07992 * 119.94314 * 180.23683 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4334 1.2799 0.0005 5 6 4.0636 2.5046 0.0000 6 6 3.3039 3.6796 -0.0016 7 6 3.9717 4.9901 -0.0028 8 6 3.2370 6.1214 -0.0038 9 6 3.9016 7.4257 -0.0055 10 7 5.2005 7.6156 0.0867 11 6 5.4704 8.9428 0.0590 12 6 6.6571 9.6808 0.1270 13 6 6.6116 11.0554 0.0716 14 6 5.3975 11.7163 -0.0507 15 6 4.2174 11.0048 -0.1192 16 6 4.2423 9.6188 -0.0661 17 7 3.2638 8.6416 -0.1074 18 6 1.9140 8.8457 -0.2229 19 1 1.3010 8.1227 -0.7405 20 6 1.3335 9.9833 0.3260 21 7 1.9141 10.5968 1.3317 22 14 -0.2724 10.6395 -0.3667 23 1 -0.6779 11.8528 0.3875 24 1 -0.0888 10.9859 -1.7990 25 1 -1.3270 9.6017 -0.2397 26 6 1.9067 3.6036 0.0033 27 6 1.2863 2.3740 -0.0016 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0188 0.3724 0.0014 32 1 5.1423 2.5578 0.0000 33 1 5.0502 5.0466 -0.0019 34 1 2.1585 6.0649 -0.0042 35 1 7.6059 9.1735 0.2218 36 1 7.5282 11.6242 0.1237 37 1 5.3764 12.7952 -0.0934 38 1 3.2762 11.5259 -0.2139 39 1 2.7007 10.2098 1.7470 40 1 1.3158 4.5076 0.0068 41 1 0.2081 2.3142 -0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486005635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:18 Heat of formation + Delta-G solvation = 66.591785 kcal Electronic energy + Delta-G solvation = -24907.351050 eV Core-core repulsion = 21332.057402 eV Total energy + Delta-G solvation = -3575.293648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91184 -40.09309 -37.69931 -36.35477 -34.67025 -33.42803 -31.15560 -31.07139 -29.75920 -29.30071 -27.86331 -26.77644 -25.04248 -23.70161 -22.55683 -21.46844 -21.01529 -20.50981 -18.95251 -18.26361 -17.87971 -16.66379 -16.11764 -15.86015 -15.66744 -15.08977 -14.77447 -14.54933 -14.39481 -14.11302 -13.81138 -13.45281 -13.32305 -13.11202 -12.86556 -12.67471 -12.31225 -12.05978 -11.97932 -11.50014 -11.38054 -11.17436 -11.12349 -10.94634 -10.82823 -10.64263 -10.52910 -10.32005 -9.86299 -9.48334 -9.01973 -9.01255 -8.88458 -7.93803 -7.62593 -7.07198 -6.77455 -4.64565 0.89318 1.39055 1.85391 2.52880 2.75924 3.01751 3.07062 3.16422 3.24762 3.76307 3.86892 4.15303 4.26984 4.67034 4.71996 4.83795 4.87032 4.95134 4.95274 5.03144 5.23927 5.26038 5.36476 5.42502 5.61545 5.70124 5.77947 5.80793 6.04101 6.07535 6.24441 6.31649 6.39012 6.41658 6.49221 6.60304 6.72387 6.77998 6.91238 7.05783 7.07089 7.26575 7.32458 7.40730 7.50485 7.67278 7.75593 7.92854 8.44515 8.95934 9.09506 9.95301 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003272 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.638261 B = 8555.523920 C =10459.741316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.114 3.886 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.072 4.072 7 C -0.109 4.109 8 C -0.044 4.044 9 C 0.213 3.787 10 N -0.514 5.514 11 C 0.041 3.959 12 C -0.086 4.086 13 C -0.139 4.139 14 C -0.149 4.149 15 C -0.066 4.066 16 C 0.002 3.998 17 N -0.276 5.276 18 C -0.426 4.426 19 H 0.107 0.893 20 C 0.025 3.975 21 N -0.813 5.813 22 Si 1.078 2.922 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.079 4.079 27 C -0.203 4.203 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.291 0.709 40 H 0.130 0.870 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 -11.340 -2.302 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.069 3.931 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.072 4.072 7 C -0.131 4.131 8 C -0.063 4.063 9 C -0.040 4.040 10 N -0.237 5.237 11 C -0.087 4.087 12 C -0.106 4.106 13 C -0.160 4.160 14 C -0.170 4.170 15 C -0.086 4.086 16 C -0.114 4.114 17 N 0.055 4.945 18 C -0.555 4.555 19 H 0.124 0.876 20 C -0.192 4.192 21 N -0.439 5.439 22 Si 0.900 3.100 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.201 1.201 26 C -0.097 4.097 27 C -0.222 4.222 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.148 0.852 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.141 -10.915 -2.070 11.545 hybrid contribution 0.123 -0.427 -0.066 0.449 sum -3.018 -11.342 -2.136 11.930 Atomic orbital electron populations 1.23032 0.78605 1.03669 1.01456 1.86012 1.21235 1.27262 1.88908 1.19130 0.92358 0.83946 0.97671 1.20301 0.91170 0.98537 1.06829 1.21134 0.99884 0.90617 0.97478 1.18993 0.92757 0.93303 1.02137 1.21821 0.99860 0.89406 1.02023 1.20872 0.98371 0.87738 0.99353 1.21432 0.87863 0.86980 1.07734 1.70513 1.11978 1.15617 1.25549 1.18880 0.92908 0.89751 1.07171 1.19981 0.95034 0.92786 1.02835 1.20577 0.97180 0.93550 1.04699 1.20617 0.91991 0.98536 1.05847 1.20277 0.98601 0.90430 0.99290 1.18907 0.88876 0.91668 1.11910 1.41462 1.05726 1.03800 1.43510 1.20675 0.80880 1.13097 1.40842 0.87550 1.26894 1.05305 0.93326 0.93667 1.70615 1.19604 1.39456 1.14177 0.83387 0.72702 0.77293 0.76579 1.19500 1.20017 1.20062 1.21252 0.94098 0.97250 0.97096 1.21128 0.99865 0.92233 1.08962 0.92659 0.92660 0.88452 0.85328 0.84968 0.85128 0.85676 0.87021 0.87023 0.86963 0.85818 0.89654 0.85237 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.74 10.49 -19.12 -0.20 -3.94 16 3 C 0.11 1.46 6.70 -39.04 -0.26 1.20 16 4 C -0.15 -1.88 9.97 -39.50 -0.39 -2.27 16 5 C -0.07 -0.96 9.79 -39.14 -0.38 -1.35 16 6 C -0.07 -1.08 5.87 -105.05 -0.62 -1.70 16 7 C -0.11 -1.91 9.53 -37.18 -0.35 -2.27 16 8 C -0.04 -0.88 9.14 -37.49 -0.34 -1.22 16 9 C 0.21 5.19 7.59 -154.04 -1.17 4.02 16 10 N -0.51 -12.74 10.75 -8.84 -0.09 -12.84 16 11 C 0.04 1.00 7.21 -84.69 -0.61 0.39 16 12 C -0.09 -1.83 10.10 -39.17 -0.40 -2.22 16 13 C -0.14 -2.66 10.01 -39.60 -0.40 -3.05 16 14 C -0.15 -3.02 10.03 -39.48 -0.40 -3.41 16 15 C -0.07 -1.56 8.36 -39.50 -0.33 -1.89 16 16 C 0.00 0.06 5.58 -83.80 -0.47 -0.40 16 17 N -0.28 -7.15 2.72 -57.46 -0.16 -7.30 16 18 C -0.43 -10.66 9.42 -14.95 -0.14 -10.80 16 19 H 0.11 2.50 7.78 -52.48 -0.41 2.09 16 20 C 0.02 0.60 4.34 -17.48 -0.08 0.52 16 21 N -0.81 -21.12 11.46 55.50 0.64 -20.48 16 22 Si 1.08 20.64 29.99 -169.99 -5.10 15.54 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 26 C -0.08 -1.12 9.40 -39.14 -0.37 -1.49 16 27 C -0.20 -2.56 9.01 -39.50 -0.36 -2.92 16 28 H 0.05 0.39 7.65 -51.93 -0.40 0.00 16 29 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 2.35 7.68 -52.49 -0.40 1.94 16 34 H 0.13 2.33 5.76 -52.49 -0.30 2.03 16 35 H 0.11 2.09 8.06 -52.48 -0.42 1.66 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.02 6.20 -52.49 -0.33 2.70 16 39 H 0.29 8.07 6.89 -40.82 -0.28 7.79 16 40 H 0.13 1.78 6.16 -52.49 -0.32 1.45 16 41 H 0.13 1.29 6.27 -52.49 -0.33 0.97 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -29.68 349.06 -10.22 -39.90 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.50 Total: 11.52 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -6.07 Total: -27.66 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.39 Total: -40.62 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.20 Total: -3.94 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.10 Total: 15.54 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.68 -10.22 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486005635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.493 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds