Wall clock time and date at job start Tue Mar 31 2020 13:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35802 * 117.00169 * 2 1 4 4 C 1.38968 * 119.88670 * 179.97438 * 3 2 1 5 5 C 1.37725 * 120.11344 * 179.97438 * 4 3 2 6 6 C 1.39921 * 119.88788 * 359.97438 * 5 4 3 7 7 C 1.47085 * 120.11444 * 180.02562 * 6 5 4 8 8 C 1.34897 * 119.99822 * 180.02562 * 7 6 5 9 9 C 1.46380 * 119.99923 * 180.02562 * 8 7 6 10 10 N 1.31595 * 125.21272 * 355.04446 * 9 8 7 11 11 C 1.35471 * 109.66876 * 180.23600 * 10 9 8 12 12 C 1.39914 * 133.21461 * 179.76007 * 11 10 9 13 13 C 1.37645 * 119.78147 * 179.97438 * 12 11 10 14 14 C 1.38772 * 120.54090 * 0.02562 * 13 12 11 15 15 C 1.37969 * 120.46680 * 359.97438 * 14 13 12 16 16 C 1.38730 * 119.86583 * 359.97438 * 15 14 13 17 17 N 1.37679 * 125.21830 * 174.86387 * 9 8 7 18 18 C 1.37001 * 126.45062 * 0.03664 * 17 9 8 19 19 H 1.08004 * 119.99793 * 327.86221 * 18 17 9 20 20 C 1.39017 * 120.00136 * 147.86480 * 18 17 9 21 21 N 1.31332 * 119.99962 * 335.15503 * 20 18 17 22 22 Si 1.86801 * 120.00251 * 155.15878 * 20 18 17 23 23 H 1.48499 * 109.47467 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46990 * 299.99888 * 22 20 18 25 25 H 1.48501 * 109.47365 * 59.99792 * 22 20 18 26 26 C 1.39922 * 119.76967 * 0.28114 * 6 5 4 27 27 C 1.37729 * 119.88607 * 359.46048 * 26 6 5 28 28 H 1.09006 * 109.47424 * 300.00104 * 1 2 3 29 29 H 1.09004 * 109.47479 * 60.00091 * 1 2 3 30 30 H 1.09003 * 109.47449 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.93967 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.05290 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.00275 * 359.97438 * 7 6 5 34 34 H 1.07995 * 119.99903 * 359.97438 * 8 7 6 35 35 H 1.08004 * 120.10748 * 0.02562 * 12 11 10 36 36 H 1.07999 * 119.73016 * 180.02562 * 13 12 11 37 37 H 1.07995 * 119.76513 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.06707 * 179.97438 * 15 14 13 39 39 H 0.97001 * 120.00080 * 354.10925 * 21 20 18 40 40 H 1.08001 * 120.05935 * 179.70646 * 26 6 5 41 41 H 1.07992 * 119.94314 * 180.23683 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4334 1.2799 0.0005 5 6 4.0636 2.5046 0.0000 6 6 3.3039 3.6796 -0.0016 7 6 3.9717 4.9901 -0.0028 8 6 3.2370 6.1214 -0.0038 9 6 3.9016 7.4257 -0.0055 10 7 5.2005 7.6156 0.0867 11 6 5.4704 8.9428 0.0590 12 6 6.6571 9.6808 0.1270 13 6 6.6116 11.0554 0.0716 14 6 5.3975 11.7163 -0.0507 15 6 4.2174 11.0048 -0.1192 16 6 4.2423 9.6188 -0.0661 17 7 3.2638 8.6416 -0.1074 18 6 1.9140 8.8457 -0.2229 19 1 1.3010 8.1227 -0.7405 20 6 1.3335 9.9833 0.3260 21 7 1.9141 10.5968 1.3317 22 14 -0.2724 10.6395 -0.3667 23 1 -0.6779 11.8528 0.3875 24 1 -0.0888 10.9859 -1.7990 25 1 -1.3270 9.6017 -0.2397 26 6 1.9067 3.6036 0.0033 27 6 1.2863 2.3740 -0.0016 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0188 0.3724 0.0014 32 1 5.1423 2.5578 0.0000 33 1 5.0502 5.0466 -0.0019 34 1 2.1585 6.0649 -0.0042 35 1 7.6059 9.1735 0.2218 36 1 7.5282 11.6242 0.1237 37 1 5.3764 12.7952 -0.0934 38 1 3.2762 11.5259 -0.2139 39 1 2.7007 10.2098 1.7470 40 1 1.3158 4.5076 0.0068 41 1 0.2081 2.3142 -0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000486005635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:18 Heat of formation + Delta-G solvation = 52.666021 kcal Electronic energy + Delta-G solvation = -24907.954916 eV Core-core repulsion = 21332.057402 eV Total energy + Delta-G solvation = -3575.897514 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.68031 -41.06741 -38.75221 -37.99519 -36.44447 -34.80022 -32.95539 -32.11667 -31.16501 -30.88119 -29.08826 -27.86714 -26.86769 -25.02873 -23.71326 -23.05711 -22.57486 -22.06637 -20.53399 -19.55314 -19.19942 -18.18607 -17.52923 -17.19742 -16.65961 -16.41404 -16.24954 -16.15406 -15.68126 -15.53578 -15.05868 -14.87888 -14.81265 -14.56805 -14.14653 -13.90611 -13.83803 -13.29801 -13.00971 -12.84686 -12.71008 -12.67817 -12.54025 -12.44459 -12.23952 -12.05360 -11.96356 -11.68083 -11.57212 -10.88251 -10.79268 -10.72695 -10.04715 -9.51422 -9.23047 -8.86827 -8.34196 -6.55676 -0.45414 0.33433 0.36494 0.84181 1.30587 1.45945 1.53323 1.75722 2.14792 2.32238 2.34305 2.56606 2.80862 2.95216 3.12911 3.43383 3.73500 3.84430 3.89497 4.10177 4.19162 4.28790 4.29792 4.35222 4.38857 4.44648 4.51136 4.65088 4.67405 4.73425 4.76613 4.84170 5.01661 5.05793 5.11135 5.19192 5.28558 5.31849 5.54319 5.58215 5.63242 5.71408 5.72368 5.75306 5.91905 5.93846 6.24364 6.39599 6.63170 7.15196 7.27211 8.03165 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003272 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.638261 B = 8555.523920 C =10459.741316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.122 3.878 4 C -0.157 4.157 5 C -0.063 4.063 6 C -0.106 4.106 7 C -0.061 4.061 8 C -0.091 4.091 9 C 0.209 3.791 10 N -0.533 5.533 11 C 0.008 3.992 12 C -0.095 4.095 13 C -0.125 4.125 14 C -0.134 4.134 15 C -0.098 4.098 16 C -0.024 4.024 17 N -0.303 5.303 18 C -0.452 4.452 19 H 0.109 0.891 20 C -0.008 4.008 21 N -0.836 5.836 22 Si 1.128 2.872 23 H -0.272 1.272 24 H -0.266 1.266 25 H -0.252 1.252 26 C -0.080 4.080 27 C -0.208 4.208 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.267 0.733 40 H 0.127 0.873 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -12.771 -2.800 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.076 3.924 4 C -0.175 4.175 5 C -0.081 4.081 6 C -0.107 4.107 7 C -0.083 4.083 8 C -0.111 4.111 9 C -0.046 4.046 10 N -0.256 5.256 11 C -0.118 4.118 12 C -0.115 4.115 13 C -0.145 4.145 14 C -0.155 4.155 15 C -0.119 4.119 16 C -0.139 4.139 17 N 0.027 4.973 18 C -0.580 4.580 19 H 0.127 0.873 20 C -0.218 4.218 21 N -0.462 5.462 22 Si 0.944 3.056 23 H -0.197 1.197 24 H -0.191 1.191 25 H -0.176 1.176 26 C -0.098 4.098 27 C -0.226 4.226 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.180 0.820 37 H 0.166 0.834 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.145 0.855 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.016 -12.357 -2.571 12.977 hybrid contribution 0.205 -0.307 0.080 0.378 sum -2.812 -12.664 -2.490 13.209 Atomic orbital electron populations 1.23369 0.76483 1.05712 1.02232 1.86019 1.23436 1.26497 1.88331 1.19361 0.92753 0.84489 0.95764 1.20584 0.91525 0.99004 1.06411 1.21349 1.00808 0.90153 0.95804 1.18953 0.93452 0.92584 1.05677 1.21957 0.99455 0.90034 0.96890 1.20867 0.98805 0.86890 1.04515 1.22213 0.88120 0.88119 1.06119 1.70488 1.12359 1.15972 1.26824 1.19517 0.94093 0.89985 1.08228 1.20423 0.94808 0.93822 1.02463 1.21095 0.98544 0.92934 1.01949 1.21114 0.91225 1.00272 1.02874 1.20373 0.99421 0.90035 1.02040 1.19401 0.89449 0.92625 1.12459 1.41660 1.06078 1.04303 1.45299 1.20932 0.81241 1.14055 1.41763 0.87306 1.28357 1.07545 0.93112 0.92763 1.70735 1.19481 1.40138 1.15890 0.82815 0.69554 0.77152 0.76112 1.19685 1.19131 1.17618 1.21354 0.93861 0.98044 0.96585 1.21343 1.01199 0.91475 1.08599 0.91904 0.91810 0.85952 0.83114 0.83183 0.85679 0.85107 0.84604 0.82019 0.83437 0.87527 0.92217 0.85498 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.70 10.49 -91.33 -0.96 -7.66 16 3 C 0.12 2.83 6.70 22.62 0.15 2.98 16 4 C -0.16 -3.54 9.97 22.32 0.22 -3.32 16 5 C -0.06 -1.56 9.79 22.56 0.22 -1.34 16 6 C -0.11 -3.17 5.87 -20.14 -0.12 -3.29 16 7 C -0.06 -2.20 9.53 23.82 0.23 -1.97 16 8 C -0.09 -3.87 9.14 23.62 0.22 -3.65 16 9 C 0.21 10.76 7.59 135.65 1.03 11.79 16 10 N -0.53 -27.60 10.75 -181.87 -1.95 -29.55 16 11 C 0.01 0.40 7.21 39.60 0.29 0.68 16 12 C -0.10 -3.96 10.10 22.54 0.23 -3.73 16 13 C -0.12 -4.46 10.01 22.26 0.22 -4.23 16 14 C -0.13 -5.29 10.03 22.33 0.22 -5.06 16 15 C -0.10 -4.81 8.36 22.32 0.19 -4.62 16 16 C -0.02 -1.31 5.58 38.84 0.22 -1.09 16 17 N -0.30 -16.66 2.72 -335.71 -0.91 -17.57 16 18 C -0.45 -23.95 9.42 84.07 0.79 -23.16 16 19 H 0.11 5.43 7.78 -2.91 -0.02 5.41 16 20 C -0.01 -0.39 4.34 84.95 0.37 -0.02 16 21 N -0.84 -45.79 11.46 21.67 0.25 -45.55 16 22 Si 1.13 42.57 29.99 68.60 2.06 44.63 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 25 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 26 C -0.08 -2.24 9.40 22.56 0.21 -2.02 16 27 C -0.21 -4.84 9.01 22.32 0.20 -4.64 16 28 H 0.06 0.71 7.65 -2.38 -0.02 0.69 16 29 H 0.06 0.71 7.65 -2.38 -0.02 0.69 16 30 H 0.12 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.13 4.59 7.68 -2.91 -0.02 4.57 16 34 H 0.13 5.22 5.76 -2.91 -0.02 5.21 16 35 H 0.14 4.86 8.06 -2.91 -0.02 4.83 16 36 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.11 5.49 6.20 -2.91 -0.02 5.47 16 39 H 0.27 15.86 6.89 -92.71 -0.64 15.22 16 40 H 0.13 3.55 6.16 -2.91 -0.02 3.53 16 41 H 0.15 2.70 6.27 -2.91 -0.02 2.68 16 Total: -1.00 -69.25 349.06 5.67 -63.58 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 1.19 Total: 37.52 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 6.00 Total: -45.40 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -2.62 Total: -92.67 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.96 Total: -7.66 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.06 Total: 44.63 kcal Total: -69.25 5.67 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486005635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.247 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds