Wall clock time and date at job start Tue Mar 31 2020 13:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35807 * 116.99531 * 2 1 4 4 C 1.38978 * 119.87974 * 180.02562 * 3 2 1 5 5 C 1.37722 * 120.11078 * 180.25395 * 4 3 2 6 6 C 1.39926 * 119.88264 * 359.49691 * 5 4 3 7 7 C 1.47097 * 120.10941 * 180.25110 * 6 5 4 8 8 C 1.34891 * 120.00044 * 43.31960 * 7 6 5 9 9 C 1.46374 * 119.99811 * 9.03641 * 8 7 6 10 10 N 1.31586 * 125.21825 * 6.52795 * 9 8 7 11 11 C 1.35472 * 109.67349 * 179.97438 * 10 9 8 12 12 C 1.39912 * 133.21233 * 180.02562 * 11 10 9 13 13 C 1.37647 * 119.77874 * 180.02562 * 12 11 10 14 14 C 1.38767 * 120.54096 * 359.97252 * 13 12 11 15 15 C 1.37968 * 120.46816 * 0.04899 * 14 13 12 16 16 C 1.38734 * 119.86815 * 359.95447 * 15 14 13 17 17 N 1.37690 * 125.21208 * 186.21724 * 9 8 7 18 18 C 1.37007 * 126.45213 * 0.02562 * 17 9 8 19 19 H 1.07999 * 120.00184 * 38.36256 * 18 17 9 20 20 C 1.39014 * 119.99461 * 218.36326 * 18 17 9 21 21 N 1.31331 * 120.00361 * 9.00577 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 188.99734 * 20 18 17 23 23 H 1.48507 * 109.46982 * 60.00295 * 22 20 18 24 24 H 1.48496 * 109.47253 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47547 * 300.00626 * 22 20 18 26 26 C 1.39921 * 119.77539 * 0.48016 * 6 5 4 27 27 C 1.37720 * 119.88358 * 359.77235 * 26 6 5 28 28 H 1.08999 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47007 * 299.99785 * 1 2 3 30 30 H 1.08997 * 109.47628 * 59.99779 * 1 2 3 31 31 H 1.07997 * 119.94573 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.05586 * 179.74242 * 5 4 3 33 33 H 1.08006 * 119.99495 * 223.30989 * 7 6 5 34 34 H 1.08004 * 119.99602 * 189.04447 * 8 7 6 35 35 H 1.07999 * 120.10708 * 0.02562 * 12 11 10 36 36 H 1.08000 * 119.73450 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.77136 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.06821 * 179.97438 * 15 14 13 39 39 H 0.97001 * 119.99794 * 184.98815 * 21 20 18 40 40 H 1.07996 * 120.05880 * 179.79687 * 26 6 5 41 41 H 1.07999 * 119.94331 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2101 0.0000 4 6 3.4335 1.2800 -0.0005 5 6 4.0635 2.5047 0.0047 6 6 3.3037 3.6796 0.0000 7 6 3.9716 4.9903 0.0000 8 6 5.0378 5.2039 -0.7981 9 6 5.4102 4.2081 -1.8041 10 7 4.7130 3.1324 -2.1014 11 6 5.3454 2.4337 -3.0747 12 6 5.0484 1.2425 -3.7459 13 6 5.9070 0.7703 -4.7127 14 6 7.0653 1.4663 -5.0280 15 6 7.3743 2.6423 -4.3759 16 6 6.5219 3.1348 -3.3984 17 7 6.5406 4.2565 -2.5888 18 6 7.5046 5.2299 -2.5684 19 1 7.8097 5.6682 -1.6297 20 6 8.0899 5.6532 -3.7562 21 7 7.6011 5.2541 -4.9079 22 14 9.5715 6.7901 -3.7139 23 1 10.6820 6.1289 -2.9824 24 1 10.0041 7.0913 -5.1021 25 1 9.2068 8.0532 -3.0233 26 6 1.9066 3.6036 0.0001 27 6 1.2863 2.3740 0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.0190 0.3726 -0.0005 32 1 5.1422 2.5580 0.0085 33 1 3.6080 5.7815 0.6390 34 1 5.6168 6.1098 -0.6946 35 1 4.1485 0.6955 -3.5064 36 1 5.6768 -0.1490 -5.2307 37 1 7.7300 1.0846 -5.7889 38 1 8.2777 3.1785 -4.6261 39 1 8.0518 5.4899 -5.7339 40 1 1.3157 4.5076 -0.0002 41 1 0.2079 2.3143 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486005640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:21 Heat of formation + Delta-G solvation = 91.743413 kcal Electronic energy + Delta-G solvation = -26274.017589 eV Core-core repulsion = 22699.814597 eV Total energy + Delta-G solvation = -3574.202991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76329 -39.56767 -37.31572 -36.09495 -34.30186 -33.13030 -31.30481 -30.57855 -29.25692 -28.75692 -27.66451 -26.76453 -25.27605 -23.14853 -22.09918 -21.31755 -21.01503 -20.20637 -18.54217 -17.82185 -17.45717 -16.42548 -15.71335 -15.47644 -15.41283 -15.21402 -14.72255 -14.32747 -13.90604 -13.63135 -13.38019 -13.16579 -13.02369 -12.88313 -12.76121 -12.30936 -12.08483 -12.01334 -11.61592 -11.49415 -11.34164 -10.98349 -10.93390 -10.80666 -10.73257 -10.60586 -10.34760 -10.25106 -9.63489 -9.13261 -8.99123 -8.79531 -8.03026 -7.40322 -7.26652 -6.65687 -6.52262 -4.64479 1.36217 2.03055 2.15565 2.73630 2.89682 2.95679 2.96809 2.98666 3.58746 3.71132 4.20566 4.45492 4.53057 4.73361 5.10379 5.10518 5.23459 5.29246 5.32336 5.37430 5.50041 5.52675 5.74403 5.91546 5.95052 5.97699 6.10130 6.19902 6.23675 6.53146 6.55000 6.64531 6.70030 6.79898 6.82869 6.89883 6.98171 7.04801 7.10087 7.20316 7.31785 7.38206 7.53469 7.63904 7.83995 7.86045 8.04686 8.13830 8.52482 9.14574 9.31267 10.13844 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.004372 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.524912 B = 6403.399871 C = 7777.114262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.323 6.323 3 C 0.126 3.874 4 C -0.165 4.165 5 C 0.032 3.968 6 C -0.078 4.078 7 C -0.108 4.108 8 C -0.056 4.056 9 C 0.218 3.782 10 N -0.498 5.498 11 C 0.035 3.965 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.161 4.161 15 C -0.036 4.036 16 C 0.047 3.953 17 N -0.275 5.275 18 C -0.351 4.351 19 H 0.109 0.891 20 C 0.052 3.948 21 N -0.823 5.823 22 Si 0.934 3.066 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.070 4.070 27 C -0.230 4.230 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.283 0.717 40 H 0.114 0.886 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 -3.446 6.629 9.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.237 6.237 3 C 0.081 3.919 4 C -0.184 4.184 5 C 0.012 3.988 6 C -0.079 4.079 7 C -0.130 4.130 8 C -0.076 4.076 9 C -0.037 4.037 10 N -0.220 5.220 11 C -0.091 4.091 12 C -0.110 4.110 13 C -0.161 4.161 14 C -0.182 4.182 15 C -0.056 4.056 16 C -0.069 4.069 17 N 0.055 4.945 18 C -0.480 4.480 19 H 0.126 0.874 20 C -0.161 4.161 21 N -0.452 5.452 22 Si 0.757 3.243 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.089 4.089 27 C -0.249 4.249 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.888 -3.603 6.729 10.281 hybrid contribution 1.196 1.105 -0.953 1.887 sum -5.692 -2.498 5.777 8.486 Atomic orbital electron populations 1.22930 0.79360 1.03075 1.01051 1.86006 1.20631 1.27912 1.89145 1.19036 0.92226 0.83451 0.97184 1.20058 0.90811 0.98292 1.09235 1.20709 0.98892 0.90453 0.88748 1.18613 0.92494 0.92884 1.03907 1.21827 0.96212 0.95372 0.99601 1.20995 0.97092 0.96513 0.92962 1.21628 0.85593 0.97144 0.99301 1.70753 1.28261 1.06307 1.16642 1.18985 0.94389 0.97243 0.98434 1.19910 0.99382 0.94453 0.97230 1.20508 0.95880 1.00110 0.99647 1.20589 0.98496 0.96949 1.02177 1.20084 0.98874 0.93561 0.93052 1.18776 0.99465 0.88800 0.99830 1.41262 1.14449 1.13897 1.24865 1.19678 1.16699 1.16365 0.95256 0.87375 1.25681 0.98919 0.97085 0.94408 1.69975 1.36127 1.40907 0.98215 0.85884 0.80106 0.80002 0.78279 1.19017 1.20136 1.18955 1.20815 0.93591 0.96327 0.98146 1.20798 0.98848 0.92475 1.12810 0.88954 0.93125 0.92957 0.86402 0.86579 0.85961 0.85306 0.87492 0.87551 0.87575 0.86510 0.90619 0.86802 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.96 10.49 -19.13 -0.20 -5.16 16 3 C 0.13 2.12 6.70 -39.04 -0.26 1.85 16 4 C -0.16 -2.97 9.97 -39.50 -0.39 -3.36 16 5 C 0.03 0.60 6.29 -39.14 -0.25 0.35 16 6 C -0.08 -1.40 4.70 -105.04 -0.49 -1.89 16 7 C -0.11 -1.81 9.81 -37.18 -0.36 -2.17 16 8 C -0.06 -1.08 9.67 -37.50 -0.36 -1.44 16 9 C 0.22 5.13 6.54 -154.04 -1.01 4.13 16 10 N -0.50 -11.82 6.33 -8.84 -0.06 -11.87 16 11 C 0.03 0.86 7.21 -84.69 -0.61 0.25 16 12 C -0.09 -1.97 10.11 -39.17 -0.40 -2.36 16 13 C -0.14 -2.81 10.01 -39.60 -0.40 -3.20 16 14 C -0.16 -3.35 10.03 -39.48 -0.40 -3.75 16 15 C -0.04 -0.85 8.48 -39.50 -0.34 -1.19 16 16 C 0.05 1.21 6.11 -83.80 -0.51 0.70 16 17 N -0.28 -7.02 2.86 -57.46 -0.16 -7.18 16 18 C -0.35 -8.64 9.48 -14.95 -0.14 -8.79 16 19 H 0.11 2.46 7.85 -52.49 -0.41 2.05 16 20 C 0.05 1.24 4.89 -17.48 -0.09 1.15 16 21 N -0.82 -20.88 10.14 55.50 0.56 -20.31 16 22 Si 0.93 18.01 29.57 -169.99 -5.03 12.99 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 26 C -0.07 -1.13 9.79 -39.14 -0.38 -1.52 16 27 C -0.23 -3.59 9.01 -39.50 -0.36 -3.95 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 30 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 31 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.12 2.34 6.82 -52.49 -0.36 1.98 16 33 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.13 2.27 7.91 -52.48 -0.42 1.85 16 35 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.12 2.85 6.34 -52.49 -0.33 2.51 16 39 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.12 1.48 6.27 -52.49 -0.33 1.15 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -29.25 344.59 -10.18 -39.43 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.74 Total: 10.78 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -5.75 Total: -23.86 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.34 Total: -39.37 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.20 Total: -5.16 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.25 -10.18 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486005640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.170 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds