Wall clock time and date at job start Tue Mar 31 2020 13:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35807 * 116.99531 * 2 1 4 4 C 1.38978 * 119.87974 * 180.02562 * 3 2 1 5 5 C 1.37722 * 120.11078 * 180.25395 * 4 3 2 6 6 C 1.39926 * 119.88264 * 359.49691 * 5 4 3 7 7 C 1.47097 * 120.10941 * 180.25110 * 6 5 4 8 8 C 1.34891 * 120.00044 * 43.31960 * 7 6 5 9 9 C 1.46374 * 119.99811 * 9.03641 * 8 7 6 10 10 N 1.31586 * 125.21825 * 6.52795 * 9 8 7 11 11 C 1.35472 * 109.67349 * 179.97438 * 10 9 8 12 12 C 1.39912 * 133.21233 * 180.02562 * 11 10 9 13 13 C 1.37647 * 119.77874 * 180.02562 * 12 11 10 14 14 C 1.38767 * 120.54096 * 359.97252 * 13 12 11 15 15 C 1.37968 * 120.46816 * 0.04899 * 14 13 12 16 16 C 1.38734 * 119.86815 * 359.95447 * 15 14 13 17 17 N 1.37690 * 125.21208 * 186.21724 * 9 8 7 18 18 C 1.37007 * 126.45213 * 0.02562 * 17 9 8 19 19 H 1.07999 * 120.00184 * 38.36256 * 18 17 9 20 20 C 1.39014 * 119.99461 * 218.36326 * 18 17 9 21 21 N 1.31331 * 120.00361 * 9.00577 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 188.99734 * 20 18 17 23 23 H 1.48507 * 109.46982 * 60.00295 * 22 20 18 24 24 H 1.48496 * 109.47253 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47547 * 300.00626 * 22 20 18 26 26 C 1.39921 * 119.77539 * 0.48016 * 6 5 4 27 27 C 1.37720 * 119.88358 * 359.77235 * 26 6 5 28 28 H 1.08999 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47007 * 299.99785 * 1 2 3 30 30 H 1.08997 * 109.47628 * 59.99779 * 1 2 3 31 31 H 1.07997 * 119.94573 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.05586 * 179.74242 * 5 4 3 33 33 H 1.08006 * 119.99495 * 223.30989 * 7 6 5 34 34 H 1.08004 * 119.99602 * 189.04447 * 8 7 6 35 35 H 1.07999 * 120.10708 * 0.02562 * 12 11 10 36 36 H 1.08000 * 119.73450 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.77136 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.06821 * 179.97438 * 15 14 13 39 39 H 0.97001 * 119.99794 * 184.98815 * 21 20 18 40 40 H 1.07996 * 120.05880 * 179.79687 * 26 6 5 41 41 H 1.07999 * 119.94331 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2101 0.0000 4 6 3.4335 1.2800 -0.0005 5 6 4.0635 2.5047 0.0047 6 6 3.3037 3.6796 0.0000 7 6 3.9716 4.9903 0.0000 8 6 5.0378 5.2039 -0.7981 9 6 5.4102 4.2081 -1.8041 10 7 4.7130 3.1324 -2.1014 11 6 5.3454 2.4337 -3.0747 12 6 5.0484 1.2425 -3.7459 13 6 5.9070 0.7703 -4.7127 14 6 7.0653 1.4663 -5.0280 15 6 7.3743 2.6423 -4.3759 16 6 6.5219 3.1348 -3.3984 17 7 6.5406 4.2565 -2.5888 18 6 7.5046 5.2299 -2.5684 19 1 7.8097 5.6682 -1.6297 20 6 8.0899 5.6532 -3.7562 21 7 7.6011 5.2541 -4.9079 22 14 9.5715 6.7901 -3.7139 23 1 10.6820 6.1289 -2.9824 24 1 10.0041 7.0913 -5.1021 25 1 9.2068 8.0532 -3.0233 26 6 1.9066 3.6036 0.0001 27 6 1.2863 2.3740 0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.0190 0.3726 -0.0005 32 1 5.1422 2.5580 0.0085 33 1 3.6080 5.7815 0.6390 34 1 5.6168 6.1098 -0.6946 35 1 4.1485 0.6955 -3.5064 36 1 5.6768 -0.1490 -5.2307 37 1 7.7300 1.0846 -5.7889 38 1 8.2777 3.1785 -4.6261 39 1 8.0518 5.4899 -5.7339 40 1 1.3157 4.5076 -0.0002 41 1 0.2079 2.3143 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000486005640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:21 Heat of formation + Delta-G solvation = 78.824127 kcal Electronic energy + Delta-G solvation = -26274.577811 eV Core-core repulsion = 22699.814597 eV Total energy + Delta-G solvation = -3574.763214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.48305 -40.80437 -38.62984 -37.73144 -36.02028 -34.56789 -33.06855 -31.90076 -30.93394 -30.19679 -29.11108 -27.90434 -27.07330 -24.62853 -23.44531 -22.89419 -22.63438 -21.86609 -20.13250 -19.25517 -18.89984 -18.04880 -17.27505 -16.83762 -16.69228 -16.51792 -16.35134 -15.90060 -15.44441 -15.08464 -14.80558 -14.69267 -14.53360 -14.32221 -14.21443 -13.69247 -13.67120 -13.35815 -13.18104 -12.93126 -12.68284 -12.57927 -12.40212 -12.34438 -12.11590 -12.05731 -11.82053 -11.57471 -11.34320 -10.74726 -10.55122 -10.49453 -9.46532 -9.04342 -8.88100 -8.41555 -8.10165 -6.49833 -0.13061 0.59461 0.71076 1.04539 1.35949 1.41630 1.43238 1.48763 2.10145 2.48860 2.51709 2.83842 2.96982 3.11754 3.35003 3.68289 4.01886 4.10810 4.13237 4.18572 4.38398 4.40330 4.45979 4.50693 4.58822 4.64132 4.74187 4.80128 4.87638 4.92120 4.98072 5.00475 5.13031 5.24934 5.28668 5.36797 5.44691 5.52438 5.59555 5.71223 5.81446 5.90797 5.99347 6.05563 6.12907 6.27733 6.42145 6.63595 6.74060 7.38234 7.53553 8.38964 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.004372 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.524912 B = 6403.399871 C = 7777.114262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.125 3.875 4 C -0.184 4.184 5 C 0.022 3.978 6 C -0.106 4.106 7 C -0.065 4.065 8 C -0.099 4.099 9 C 0.214 3.786 10 N -0.502 5.502 11 C 0.004 3.996 12 C -0.102 4.102 13 C -0.131 4.131 14 C -0.152 4.152 15 C -0.064 4.064 16 C 0.016 3.984 17 N -0.302 5.302 18 C -0.378 4.378 19 H 0.115 0.885 20 C 0.012 3.988 21 N -0.861 5.861 22 Si 1.005 2.995 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.255 1.255 26 C -0.065 4.065 27 C -0.228 4.228 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.102 0.898 39 H 0.283 0.717 40 H 0.145 0.855 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 -3.473 7.186 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.080 3.920 4 C -0.203 4.203 5 C 0.002 3.998 6 C -0.107 4.107 7 C -0.087 4.087 8 C -0.118 4.118 9 C -0.042 4.042 10 N -0.223 5.223 11 C -0.120 4.120 12 C -0.122 4.122 13 C -0.151 4.151 14 C -0.173 4.173 15 C -0.084 4.084 16 C -0.099 4.099 17 N 0.028 4.972 18 C -0.506 4.506 19 H 0.133 0.867 20 C -0.196 4.196 21 N -0.491 5.491 22 Si 0.825 3.175 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.179 1.179 26 C -0.083 4.083 27 C -0.247 4.247 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.185 0.815 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.163 0.837 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.860 -3.655 7.298 12.046 hybrid contribution 1.562 0.921 -1.011 2.076 sum -7.297 -2.734 6.287 10.012 Atomic orbital electron populations 1.23294 0.76702 1.05275 1.02105 1.85991 1.23366 1.27256 1.88797 1.19123 0.91891 0.84672 0.96287 1.20096 0.92000 0.97840 1.10397 1.20523 0.97687 0.91576 0.89990 1.18850 0.93635 0.92816 1.05364 1.22314 0.93554 0.95626 0.97221 1.21165 0.99501 0.96740 0.94424 1.22479 0.85084 0.97447 0.99234 1.70824 1.28499 1.06452 1.16565 1.19521 0.94713 0.98475 0.99326 1.20209 1.00382 0.93914 0.97660 1.20941 0.94594 1.01010 0.98568 1.21003 0.99065 0.95533 1.01693 1.20190 0.98871 0.95113 0.94239 1.19229 1.00433 0.89547 1.00711 1.41515 1.15440 1.14437 1.25819 1.20056 1.17557 1.16947 0.96036 0.86733 1.26612 1.01337 0.98081 0.93612 1.70096 1.37673 1.42567 0.98806 0.84833 0.76385 0.78101 0.78203 1.18630 1.19984 1.17857 1.21179 0.92876 0.97878 0.96409 1.21165 1.00478 0.91663 1.11346 0.86430 0.91431 0.92356 0.87084 0.89337 0.81497 0.84247 0.86319 0.83258 0.84312 0.87985 0.90659 0.83737 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -9.84 10.49 -91.38 -0.96 -10.80 16 3 C 0.13 4.06 6.70 22.62 0.15 4.22 16 4 C -0.18 -6.76 9.97 22.33 0.22 -6.54 16 5 C 0.02 0.86 6.29 22.56 0.14 1.00 16 6 C -0.11 -3.67 4.70 -20.14 -0.09 -3.76 16 7 C -0.07 -2.09 9.81 23.83 0.23 -1.86 16 8 C -0.10 -3.87 9.67 23.62 0.23 -3.64 16 9 C 0.21 10.48 6.54 135.65 0.89 11.36 16 10 N -0.50 -24.69 6.33 -181.87 -1.15 -25.85 16 11 C 0.00 0.22 7.21 39.60 0.29 0.50 16 12 C -0.10 -4.48 10.11 22.54 0.23 -4.26 16 13 C -0.13 -5.05 10.01 22.26 0.22 -4.83 16 14 C -0.15 -6.29 10.03 22.33 0.22 -6.07 16 15 C -0.06 -3.17 8.48 22.32 0.19 -2.98 16 16 C 0.02 0.86 6.11 38.84 0.24 1.10 16 17 N -0.30 -16.19 2.86 -335.71 -0.96 -17.15 16 18 C -0.38 -19.49 9.48 84.07 0.80 -18.69 16 19 H 0.12 5.46 7.85 -2.91 -0.02 5.44 16 20 C 0.01 0.60 4.89 84.95 0.42 1.02 16 21 N -0.86 -45.55 10.14 21.67 0.22 -45.33 16 22 Si 1.00 37.79 29.57 68.60 2.03 39.81 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 24 H -0.28 -10.14 7.11 99.48 0.71 -9.43 16 25 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 26 C -0.07 -1.92 9.79 22.55 0.22 -1.70 16 27 C -0.23 -6.44 9.01 22.32 0.20 -6.24 16 28 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.00 7.65 -2.38 -0.02 0.99 16 30 H 0.06 1.00 7.65 -2.39 -0.02 0.98 16 31 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.09 3.83 6.82 -2.91 -0.02 3.81 16 33 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 34 H 0.14 5.00 7.91 -2.91 -0.02 4.98 16 35 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 36 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 37 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.10 5.26 6.34 -2.91 -0.02 5.24 16 39 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.15 3.16 6.27 -2.91 -0.02 3.14 16 Total: -1.00 -67.76 344.59 6.13 -61.63 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 1.05 Total: 37.57 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 5.90 Total: -39.88 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -1.89 Total: -88.32 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.96 Total: -10.80 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.81 kcal Total: -67.76 6.13 -61.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486005640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.449 kcal (2) G-P(sol) polarization free energy of solvation -67.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds