Wall clock time and date at job start Tue Mar 31 2020 13:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 117.00082 * 2 1 4 4 C 1.38913 * 119.97166 * 359.97438 * 3 2 1 5 5 C 1.38286 * 120.29012 * 180.02562 * 4 3 2 6 6 C 1.37946 * 120.23364 * 359.97256 * 5 4 3 7 7 C 1.39835 * 119.93170 * 0.02562 * 6 5 4 8 8 C 1.47222 * 120.14024 * 180.02562 * 7 6 5 9 9 C 1.34799 * 119.99875 * 359.97438 * 8 7 6 10 10 C 1.46450 * 120.00134 * 180.02562 * 9 8 7 11 11 N 1.31554 * 125.20976 * 354.85492 * 10 9 8 12 12 C 1.35446 * 109.68003 * 179.97438 * 11 10 9 13 13 C 1.39916 * 133.22365 * 180.02562 * 12 11 10 14 14 C 1.37643 * 119.78064 * 180.02562 * 13 12 11 15 15 C 1.38771 * 120.53816 * 359.97269 * 14 13 12 16 16 C 1.37957 * 120.47283 * 0.04922 * 15 14 13 17 17 C 1.38732 * 119.86801 * 359.70428 * 16 15 14 18 18 N 1.37653 * 125.21417 * 174.85722 * 10 9 8 19 19 C 1.36991 * 126.45247 * 359.96898 * 18 10 9 20 20 H 1.08000 * 119.99569 * 327.90547 * 19 18 10 21 21 C 1.39037 * 120.00202 * 147.91459 * 19 18 10 22 22 N 1.31314 * 119.99842 * 335.44355 * 21 19 18 23 23 Si 1.86804 * 119.99849 * 155.17377 * 21 19 18 24 24 H 1.48490 * 109.47045 * 270.27188 * 23 21 19 25 25 H 1.48496 * 109.46999 * 30.27466 * 23 21 19 26 26 H 1.48503 * 109.47075 * 150.27286 * 23 21 19 27 27 C 1.38378 * 119.97188 * 180.28084 * 3 2 1 28 28 H 1.08997 * 109.47145 * 59.99779 * 1 2 3 29 29 H 1.08996 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46870 * 299.99898 * 1 2 3 31 31 H 1.07994 * 119.85306 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.88557 * 179.97438 * 5 4 3 33 33 H 1.07992 * 120.03040 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.00053 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.00072 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.11228 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.73154 * 179.97438 * 14 13 12 38 38 H 1.08007 * 119.76044 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.06967 * 179.97438 * 16 15 14 40 40 H 0.96997 * 120.00636 * 353.87337 * 22 21 19 41 41 H 1.08000 * 120.11859 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2889 2.3755 -0.0005 5 6 1.9099 3.6111 -0.0011 6 6 3.2867 3.6966 -0.0005 7 6 4.0581 2.5303 0.0001 8 6 5.5279 2.6161 0.0012 9 6 6.1326 3.8209 0.0012 10 6 7.5946 3.9063 0.0018 11 7 8.4143 2.8819 0.0988 12 6 9.6960 3.3186 0.0662 13 6 10.9323 2.6667 0.1312 14 6 12.0957 3.3999 0.0718 15 6 12.0530 4.7813 -0.0527 16 6 10.8430 5.4408 -0.1179 17 6 9.6592 4.7194 -0.0648 18 7 8.3217 5.0708 -0.0989 19 6 7.8160 6.3385 -0.2166 20 1 6.8833 6.5017 -0.7360 21 6 8.5035 7.4150 0.3326 22 7 9.3287 7.2241 1.3361 23 14 8.2591 9.1318 -0.3621 24 1 9.2423 9.3705 -1.4490 25 1 6.8822 9.2550 -0.9042 26 1 8.4587 10.1346 0.7149 27 6 3.4279 1.2826 -0.0059 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2106 2.3157 -0.0005 32 1 1.3149 4.5124 -0.0019 33 1 3.7682 4.6632 -0.0005 34 1 6.1215 1.7139 0.0013 35 1 5.5390 4.7231 0.0008 36 1 10.9737 1.5918 0.2277 37 1 13.0496 2.8959 0.1225 38 1 12.9736 5.3442 -0.0986 39 1 10.8173 6.5162 -0.2143 40 1 9.3924 6.3502 1.7522 41 1 4.0176 0.3778 -0.0100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486102696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:34 Heat of formation + Delta-G solvation = 66.960169 kcal Electronic energy + Delta-G solvation = -24903.751513 eV Core-core repulsion = 21328.473839 eV Total energy + Delta-G solvation = -3575.277674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93606 -40.06388 -37.66611 -36.36969 -34.69544 -33.56999 -31.16492 -30.91020 -29.66957 -29.30646 -27.52219 -27.26223 -25.06487 -23.71729 -22.53005 -21.49689 -21.05001 -20.50983 -19.11175 -18.04171 -17.55259 -16.32521 -16.26851 -15.87874 -15.83944 -15.64588 -14.86866 -14.57324 -14.12323 -14.11438 -13.76364 -13.40288 -13.34193 -13.05577 -12.85679 -12.63097 -12.41035 -12.22995 -11.55338 -11.43553 -11.37718 -11.32984 -11.08420 -10.96987 -10.83970 -10.68907 -10.54803 -10.32594 -9.99450 -9.69080 -9.02933 -8.89630 -8.44560 -8.12573 -7.65243 -7.07986 -6.85185 -4.66115 0.81375 1.50513 1.83787 2.52050 2.74928 3.03992 3.06074 3.16810 3.23177 3.75541 3.87943 4.14258 4.25438 4.65426 4.73763 4.86048 4.87121 4.94619 4.96188 5.03322 5.22787 5.27621 5.35449 5.43856 5.56335 5.74731 5.79517 5.82900 6.00041 6.05972 6.27691 6.33166 6.40270 6.46573 6.50289 6.55909 6.70147 6.81134 6.90281 7.03362 7.04856 7.25806 7.36077 7.39960 7.49648 7.65943 7.74307 7.91495 8.42980 8.94042 9.07709 9.94259 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.003214 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.761873 B = 8711.149238 C =10538.660606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.219 4.219 5 C -0.078 4.078 6 C -0.155 4.155 7 C 0.005 3.995 8 C -0.121 4.121 9 C -0.027 4.027 10 C 0.209 3.791 11 N -0.511 5.511 12 C 0.041 3.959 13 C -0.086 4.086 14 C -0.139 4.139 15 C -0.148 4.148 16 C -0.065 4.065 17 C 0.002 3.998 18 N -0.275 5.275 19 C -0.425 4.425 20 H 0.108 0.892 21 C 0.024 3.976 22 N -0.812 5.812 23 Si 1.082 2.918 24 H -0.274 1.274 25 H -0.276 1.276 26 H -0.274 1.274 27 C -0.146 4.146 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.292 0.708 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 -5.108 -2.355 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.238 4.238 5 C -0.096 4.096 6 C -0.173 4.173 7 C 0.005 3.995 8 C -0.143 4.143 9 C -0.047 4.047 10 C -0.045 4.045 11 N -0.234 5.234 12 C -0.087 4.087 13 C -0.106 4.106 14 C -0.160 4.160 15 C -0.169 4.169 16 C -0.086 4.086 17 C -0.114 4.114 18 N 0.057 4.943 19 C -0.554 4.554 20 H 0.126 0.874 21 C -0.192 4.192 22 N -0.438 5.438 23 Si 0.905 3.095 24 H -0.200 1.200 25 H -0.201 1.201 26 H -0.199 1.199 27 C -0.165 4.165 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.101 -4.395 -2.115 12.125 hybrid contribution -0.573 -0.527 -0.067 0.782 sum -11.674 -4.922 -2.183 12.856 Atomic orbital electron populations 1.23009 0.78739 1.03646 1.01237 1.86067 1.21104 1.27155 1.89008 1.18871 0.92165 0.83994 0.96969 1.21200 0.99629 0.92438 1.10566 1.20813 0.94497 0.96798 0.97466 1.21369 0.93638 0.98403 1.03939 1.18820 0.93046 0.92003 0.95621 1.21840 0.90882 0.98423 1.03175 1.20947 0.88308 0.97937 0.97460 1.21403 0.92841 0.82013 1.08194 1.70488 0.99237 1.28431 1.25255 1.18874 0.92155 0.90494 1.07164 1.19988 0.89395 0.98443 1.02759 1.20584 0.96739 0.94009 1.04629 1.20621 0.96320 0.94221 1.05784 1.20273 0.89413 0.99604 0.99262 1.18923 0.85644 0.94897 1.11936 1.41456 1.03206 1.06346 1.43313 1.20747 1.12503 0.81560 1.40621 0.87408 1.26918 0.93259 1.05368 0.93685 1.70573 1.30533 1.28434 1.14264 0.83312 0.77339 0.72352 0.76506 1.19956 1.20061 1.19911 1.20528 0.91160 0.98034 1.06747 0.92791 0.88466 0.92778 0.85890 0.85855 0.85353 0.84929 0.85371 0.86984 0.86992 0.86939 0.85804 0.89599 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.92 10.49 -19.43 -0.20 -4.12 16 3 C 0.12 1.67 6.68 -39.28 -0.26 1.41 16 4 C -0.22 -2.61 9.04 -39.31 -0.36 -2.96 16 5 C -0.08 -0.95 10.02 -39.67 -0.40 -1.35 16 6 C -0.16 -2.22 9.41 -39.09 -0.37 -2.59 16 7 C 0.01 0.08 5.87 -105.07 -0.62 -0.53 16 8 C -0.12 -2.16 9.53 -37.15 -0.35 -2.52 16 9 C -0.03 -0.54 9.14 -37.50 -0.34 -0.89 16 10 C 0.21 5.06 7.59 -154.07 -1.17 3.89 16 11 N -0.51 -12.69 10.75 -8.83 -0.09 -12.78 16 12 C 0.04 1.01 7.21 -84.70 -0.61 0.40 16 13 C -0.09 -1.82 10.10 -39.17 -0.40 -2.21 16 14 C -0.14 -2.64 10.01 -39.60 -0.40 -3.04 16 15 C -0.15 -3.00 10.03 -39.49 -0.40 -3.39 16 16 C -0.07 -1.54 8.36 -39.50 -0.33 -1.87 16 17 C 0.00 0.06 5.59 -83.80 -0.47 -0.41 16 18 N -0.27 -7.07 2.71 -57.45 -0.16 -7.23 16 19 C -0.43 -10.59 9.41 -14.95 -0.14 -10.73 16 20 H 0.11 2.53 7.78 -52.49 -0.41 2.12 16 21 C 0.02 0.59 4.35 -17.48 -0.08 0.51 16 22 N -0.81 -21.03 11.46 55.50 0.64 -20.39 16 23 Si 1.08 20.64 29.99 -169.99 -5.10 15.54 16 24 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 25 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 26 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 27 C -0.15 -2.14 9.73 -38.95 -0.38 -2.52 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.12 1.13 6.28 -52.49 -0.33 0.80 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.77 6.16 -52.49 -0.32 1.45 16 34 H 0.13 2.44 7.69 -52.49 -0.40 2.04 16 35 H 0.13 2.38 5.77 -52.49 -0.30 2.07 16 36 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 38 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 39 H 0.12 3.02 6.21 -52.49 -0.33 2.69 16 40 H 0.29 8.05 6.90 -40.82 -0.28 7.77 16 41 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -29.45 349.14 -10.23 -39.67 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -4.50 Total: 11.62 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -6.07 Total: -27.58 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.39 Total: -40.40 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.20 Total: -4.12 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.10 Total: 15.54 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.45 -10.23 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486102696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.633 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds