Wall clock time and date at job start Tue Mar 31 2020 13:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 117.00082 * 2 1 4 4 C 1.38913 * 119.97166 * 359.97438 * 3 2 1 5 5 C 1.38286 * 120.29012 * 180.02562 * 4 3 2 6 6 C 1.37946 * 120.23364 * 359.97256 * 5 4 3 7 7 C 1.39835 * 119.93170 * 0.02562 * 6 5 4 8 8 C 1.47222 * 120.14024 * 180.02562 * 7 6 5 9 9 C 1.34799 * 119.99875 * 359.97438 * 8 7 6 10 10 C 1.46450 * 120.00134 * 180.02562 * 9 8 7 11 11 N 1.31554 * 125.20976 * 354.85492 * 10 9 8 12 12 C 1.35446 * 109.68003 * 179.97438 * 11 10 9 13 13 C 1.39916 * 133.22365 * 180.02562 * 12 11 10 14 14 C 1.37643 * 119.78064 * 180.02562 * 13 12 11 15 15 C 1.38771 * 120.53816 * 359.97269 * 14 13 12 16 16 C 1.37957 * 120.47283 * 0.04922 * 15 14 13 17 17 C 1.38732 * 119.86801 * 359.70428 * 16 15 14 18 18 N 1.37653 * 125.21417 * 174.85722 * 10 9 8 19 19 C 1.36991 * 126.45247 * 359.96898 * 18 10 9 20 20 H 1.08000 * 119.99569 * 327.90547 * 19 18 10 21 21 C 1.39037 * 120.00202 * 147.91459 * 19 18 10 22 22 N 1.31314 * 119.99842 * 335.44355 * 21 19 18 23 23 Si 1.86804 * 119.99849 * 155.17377 * 21 19 18 24 24 H 1.48490 * 109.47045 * 270.27188 * 23 21 19 25 25 H 1.48496 * 109.46999 * 30.27466 * 23 21 19 26 26 H 1.48503 * 109.47075 * 150.27286 * 23 21 19 27 27 C 1.38378 * 119.97188 * 180.28084 * 3 2 1 28 28 H 1.08997 * 109.47145 * 59.99779 * 1 2 3 29 29 H 1.08996 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46870 * 299.99898 * 1 2 3 31 31 H 1.07994 * 119.85306 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.88557 * 179.97438 * 5 4 3 33 33 H 1.07992 * 120.03040 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.00053 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.00072 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.11228 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.73154 * 179.97438 * 14 13 12 38 38 H 1.08007 * 119.76044 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.06967 * 179.97438 * 16 15 14 40 40 H 0.96997 * 120.00636 * 353.87337 * 22 21 19 41 41 H 1.08000 * 120.11859 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2889 2.3755 -0.0005 5 6 1.9099 3.6111 -0.0011 6 6 3.2867 3.6966 -0.0005 7 6 4.0581 2.5303 0.0001 8 6 5.5279 2.6161 0.0012 9 6 6.1326 3.8209 0.0012 10 6 7.5946 3.9063 0.0018 11 7 8.4143 2.8819 0.0988 12 6 9.6960 3.3186 0.0662 13 6 10.9323 2.6667 0.1312 14 6 12.0957 3.3999 0.0718 15 6 12.0530 4.7813 -0.0527 16 6 10.8430 5.4408 -0.1179 17 6 9.6592 4.7194 -0.0648 18 7 8.3217 5.0708 -0.0989 19 6 7.8160 6.3385 -0.2166 20 1 6.8833 6.5017 -0.7360 21 6 8.5035 7.4150 0.3326 22 7 9.3287 7.2241 1.3361 23 14 8.2591 9.1318 -0.3621 24 1 9.2423 9.3705 -1.4490 25 1 6.8822 9.2550 -0.9042 26 1 8.4587 10.1346 0.7149 27 6 3.4279 1.2826 -0.0059 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2106 2.3157 -0.0005 32 1 1.3149 4.5124 -0.0019 33 1 3.7682 4.6632 -0.0005 34 1 6.1215 1.7139 0.0013 35 1 5.5390 4.7231 0.0008 36 1 10.9737 1.5918 0.2277 37 1 13.0496 2.8959 0.1225 38 1 12.9736 5.3442 -0.0986 39 1 10.8173 6.5162 -0.2143 40 1 9.3924 6.3502 1.7522 41 1 4.0176 0.3778 -0.0100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000486102696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:33 Heat of formation + Delta-G solvation = 53.136611 kcal Electronic energy + Delta-G solvation = -24904.350947 eV Core-core repulsion = 21328.473839 eV Total energy + Delta-G solvation = -3575.877108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.70918 -41.04787 -38.72997 -38.00849 -36.46570 -34.94909 -32.97543 -32.00439 -31.11002 -30.83829 -28.91005 -28.14948 -26.89037 -25.11883 -23.60723 -23.10343 -22.66601 -22.06115 -20.60134 -19.65408 -18.78331 -17.87504 -17.52326 -17.24304 -16.99362 -16.63509 -16.39799 -16.18889 -15.67832 -15.43241 -15.06923 -14.92237 -14.73148 -14.46528 -14.16209 -13.92929 -13.83575 -13.33677 -13.01315 -12.76989 -12.68308 -12.67161 -12.54042 -12.39405 -12.16711 -12.05167 -11.93001 -11.75491 -11.60475 -11.14354 -10.81966 -10.74155 -9.73267 -9.48762 -9.23839 -8.87771 -8.49978 -6.56860 -0.53548 0.30283 0.45143 0.83189 1.28362 1.47676 1.53826 1.75807 2.13497 2.30888 2.32994 2.56233 2.80946 2.93880 3.11742 3.40325 3.77295 3.82102 4.02262 4.03516 4.19683 4.24431 4.29198 4.37300 4.42022 4.45285 4.52277 4.55999 4.66420 4.74767 4.75600 4.83839 4.93646 5.05335 5.18374 5.18642 5.25610 5.42345 5.49756 5.54209 5.61336 5.70816 5.71764 5.76042 5.90502 5.92094 6.22827 6.43932 6.61944 7.13133 7.25254 8.02590 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.003214 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.761873 B = 8711.149238 C =10538.660606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.119 3.881 4 C -0.203 4.203 5 C -0.076 4.076 6 C -0.161 4.161 7 C -0.023 4.023 8 C -0.079 4.079 9 C -0.067 4.067 10 C 0.203 3.797 11 N -0.532 5.532 12 C 0.008 3.992 13 C -0.096 4.096 14 C -0.124 4.124 15 C -0.134 4.134 16 C -0.097 4.097 17 C -0.024 4.024 18 N -0.300 5.300 19 C -0.451 4.451 20 H 0.111 0.889 21 C -0.008 4.008 22 N -0.836 5.836 23 Si 1.132 2.868 24 H -0.267 1.267 25 H -0.253 1.253 26 H -0.273 1.273 27 C -0.155 4.155 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.107 0.893 40 H 0.268 0.732 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.979 -5.571 -2.900 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.073 3.927 4 C -0.222 4.222 5 C -0.093 4.093 6 C -0.180 4.180 7 C -0.023 4.023 8 C -0.102 4.102 9 C -0.087 4.087 10 C -0.052 4.052 11 N -0.256 5.256 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.144 4.144 15 C -0.154 4.154 16 C -0.117 4.117 17 C -0.139 4.139 18 N 0.030 4.970 19 C -0.579 4.579 20 H 0.129 0.871 21 C -0.218 4.218 22 N -0.461 5.461 23 Si 0.947 3.053 24 H -0.193 1.193 25 H -0.176 1.176 26 H -0.198 1.198 27 C -0.174 4.174 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.180 0.820 38 H 0.166 0.834 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.720 -4.885 -2.666 13.884 hybrid contribution -0.261 -0.698 0.098 0.751 sum -12.981 -5.583 -2.568 14.362 Atomic orbital electron populations 1.23372 0.76233 1.05632 1.02449 1.86056 1.23688 1.26591 1.88755 1.18959 0.91835 0.85201 0.96666 1.21623 1.01364 0.91497 1.07689 1.21181 0.93657 0.98387 0.96122 1.21517 0.94861 0.97812 1.03766 1.18713 0.91590 0.93300 0.98732 1.21940 0.92456 0.97106 0.98668 1.20949 0.86610 0.99159 1.01950 1.22162 0.94408 0.81846 1.06773 1.70464 0.99713 1.28881 1.26494 1.19507 0.93281 0.90791 1.08249 1.20428 0.88759 0.99894 1.02465 1.21101 0.98043 0.93443 1.01846 1.21122 0.96294 0.95212 1.02773 1.20368 0.90367 0.99046 1.01958 1.19410 0.86248 0.95783 1.12480 1.41651 1.03599 1.06773 1.44966 1.21010 1.13346 0.81974 1.41520 0.87093 1.28388 0.92102 1.08553 0.92785 1.70696 1.32764 1.26732 1.15956 0.82757 0.78581 0.67911 0.76005 1.19262 1.17647 1.19796 1.20611 0.92403 0.97561 1.06826 0.91453 0.86378 0.91504 0.82424 0.82655 0.85468 0.85959 0.84477 0.84674 0.81990 0.83360 0.87463 0.92156 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.49 10.49 -92.44 -0.97 -8.46 16 3 C 0.12 2.94 6.68 22.46 0.15 3.09 16 4 C -0.20 -4.13 9.04 22.44 0.20 -3.93 16 5 C -0.08 -1.64 10.02 22.21 0.22 -1.42 16 6 C -0.16 -4.49 9.41 22.59 0.21 -4.28 16 7 C -0.02 -0.73 5.87 -20.16 -0.12 -0.85 16 8 C -0.08 -2.97 9.53 23.84 0.23 -2.74 16 9 C -0.07 -2.87 9.14 23.62 0.22 -2.65 16 10 C 0.20 10.46 7.59 135.69 1.03 11.49 16 11 N -0.53 -27.80 10.75 -181.86 -1.95 -29.75 16 12 C 0.01 0.41 7.21 39.60 0.29 0.69 16 13 C -0.10 -3.99 10.10 22.54 0.23 -3.77 16 14 C -0.12 -4.43 10.01 22.26 0.22 -4.20 16 15 C -0.13 -5.24 10.03 22.33 0.22 -5.01 16 16 C -0.10 -4.72 8.36 22.32 0.19 -4.54 16 17 C -0.02 -1.29 5.59 38.85 0.22 -1.07 16 18 N -0.30 -16.42 2.71 -335.68 -0.91 -17.32 16 19 C -0.45 -23.69 9.41 84.08 0.79 -22.90 16 20 H 0.11 5.49 7.78 -2.91 -0.02 5.47 16 21 C -0.01 -0.41 4.35 84.96 0.37 -0.04 16 22 N -0.84 -45.50 11.46 21.67 0.25 -45.25 16 23 Si 1.13 42.38 29.99 68.60 2.06 44.43 16 24 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 25 H -0.25 -8.43 7.11 99.48 0.71 -7.73 16 26 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 27 C -0.16 -4.49 9.73 22.68 0.22 -4.27 16 28 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 31 H 0.16 2.09 6.28 -2.91 -0.02 2.07 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.13 3.52 6.16 -2.91 -0.02 3.50 16 34 H 0.12 4.76 7.69 -2.91 -0.02 4.73 16 35 H 0.14 5.43 5.77 -2.91 -0.02 5.41 16 36 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.11 5.50 6.21 -2.91 -0.02 5.48 16 40 H 0.27 15.82 6.90 -92.71 -0.64 15.18 16 41 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -69.46 349.14 5.66 -63.79 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 1.19 Total: 37.62 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 6.00 Total: -45.07 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -2.62 Total: -92.32 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.97 Total: -8.46 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.06 Total: 44.43 kcal Total: -69.46 5.66 -63.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486102696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.928 kcal (2) G-P(sol) polarization free energy of solvation -69.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds