Wall clock time and date at job start Tue Mar 31 2020 12:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46999 * 2 1 4 4 C 1.50696 * 109.47456 * 239.99641 * 2 1 3 5 5 O 1.21290 * 120.00012 * 240.00075 * 4 2 1 6 6 N 1.34777 * 119.99736 * 59.99964 * 4 2 1 7 7 C 1.40159 * 119.99983 * 179.97438 * 6 4 2 8 8 C 1.40409 * 125.97033 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86602 * 179.73843 * 8 7 6 10 10 N 1.34966 * 107.86079 * 0.39163 * 9 8 7 11 11 C 1.46500 * 125.97782 * 179.87198 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71059 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 N 1.31219 * 125.97718 * 179.97438 * 7 6 4 21 21 N 1.46499 * 109.46959 * 119.99606 * 2 1 3 22 22 C 1.33878 * 122.76087 * 59.71044 * 21 2 1 23 23 O 1.21223 * 125.39387 * 359.97438 * 22 21 2 24 24 C 1.51316 * 109.20414 * 179.84250 * 22 21 2 25 25 C 1.54222 * 103.55859 * 0.38790 * 24 22 21 26 26 C 1.33879 * 122.76465 * 240.00641 * 21 2 1 27 27 O 1.21228 * 125.39452 * 0.02562 * 26 21 2 28 28 H 1.08995 * 109.47649 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47278 * 300.00823 * 1 2 3 30 30 H 1.09011 * 109.46861 * 60.00149 * 1 2 3 31 31 H 0.97003 * 120.00166 * 0.02562 * 6 4 2 32 32 H 1.08002 * 126.06850 * 0.02562 * 8 7 6 33 33 H 1.08003 * 126.07024 * 180.26845 * 9 8 7 34 34 H 1.09004 * 109.47078 * 4.71821 * 11 10 9 35 35 H 1.08993 * 109.47364 * 244.71592 * 11 10 9 36 36 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 37 37 H 1.09000 * 110.79481 * 241.77160 * 24 22 21 38 38 H 1.09003 * 110.41042 * 118.81699 * 24 22 21 39 39 H 1.08994 * 110.60711 * 241.26348 * 25 24 22 40 40 H 1.09000 * 110.73905 * 118.35808 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7068 -0.2500 -2.4545 7 6 2.1745 -0.9104 -3.5988 8 6 2.9852 -2.0567 -3.6161 9 6 3.2113 -2.3856 -4.9083 10 7 2.5776 -1.4800 -5.6829 11 6 2.5633 -1.4603 -7.1477 12 6 1.1376 -1.4601 -7.6362 13 1 0.3237 -1.4729 -6.9265 14 6 0.8724 -1.4435 -8.9891 15 7 1.8636 -1.4225 -9.8532 16 14 -0.8947 -1.4425 -9.5946 17 1 -0.9093 -1.4165 -11.0793 18 1 -1.5833 -2.6674 -9.1141 19 1 -1.5964 -0.2428 -9.0716 20 7 1.9305 -0.5662 -4.8414 21 7 2.0183 -0.6905 1.1962 22 6 1.7244 -1.9686 1.4657 23 8 1.0386 -2.6918 0.7757 24 6 2.3865 -2.3680 2.7663 25 6 3.1135 -1.0828 3.2115 26 6 2.7904 -0.0938 2.1128 27 8 3.1700 1.0566 2.0696 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.1494 0.5388 -2.5435 32 1 3.3579 -2.5851 -2.7510 33 1 3.7968 -3.2230 -5.2582 34 1 3.0774 -2.3430 -7.5280 35 1 3.0696 -0.5632 -7.5039 36 1 2.7812 -1.4227 -9.5389 37 1 3.1000 -3.1762 2.6051 38 1 1.6360 -2.6585 3.5014 39 1 4.1886 -1.2515 3.2717 40 1 2.7271 -0.7326 4.1687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524227564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:56 Heat of formation + Delta-G solvation = -9.741963 kcal Electronic energy + Delta-G solvation = -26559.104990 eV Core-core repulsion = 22569.651999 eV Total energy + Delta-G solvation = -3989.452991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.41381 -40.75177 -39.35438 -38.78697 -36.14427 -34.97322 -34.72069 -33.67417 -31.26004 -30.33994 -29.41055 -26.53396 -26.47159 -25.16834 -23.23765 -22.75526 -22.03793 -20.76908 -19.85868 -19.29890 -17.88658 -17.50073 -17.20720 -17.01143 -16.53960 -16.24672 -15.50969 -15.27702 -14.82508 -14.52900 -14.46300 -14.28449 -14.18268 -13.88250 -13.78634 -13.42066 -13.24195 -12.91573 -12.75407 -12.45466 -12.29769 -12.19595 -11.82895 -11.77595 -11.18306 -10.86684 -10.82913 -10.55745 -10.48105 -10.26799 -10.16828 -10.03625 -9.59657 -9.02494 -8.59464 -8.25477 -7.57596 -6.59516 -4.33643 1.23407 1.91372 2.12853 2.36225 2.70713 2.81491 3.37304 3.38870 3.55567 3.58000 3.64562 3.73643 3.83973 4.02488 4.33402 4.38884 4.40497 4.51357 4.57841 4.82884 5.00890 5.14195 5.16017 5.18801 5.23125 5.35180 5.42770 5.65547 5.70528 6.10686 6.36374 6.43924 6.46664 6.55300 6.72335 6.99633 7.24644 7.37703 7.47827 7.66686 7.79928 8.04654 8.32452 8.49693 8.59822 9.34580 10.78125 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.002630 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.628700 B =10643.611600 C =10845.746079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 H 0.134 0.866 4 C 0.516 3.484 5 O -0.501 6.501 6 N -0.624 5.624 7 C 0.259 3.741 8 C -0.283 4.283 9 C 0.051 3.949 10 N -0.316 5.316 11 C 0.249 3.751 12 C -0.608 4.608 13 H 0.063 0.937 14 C 0.023 3.977 15 N -0.904 5.904 16 Si 1.077 2.923 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.285 1.285 20 N -0.299 5.299 21 N -0.559 5.559 22 C 0.530 3.470 23 O -0.460 6.460 24 C -0.154 4.154 25 C -0.153 4.153 26 C 0.530 3.470 27 O -0.485 6.485 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.412 0.588 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.267 0.733 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 0.964 27.666 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 H 0.152 0.848 4 C 0.299 3.701 5 O -0.373 6.373 6 N -0.272 5.272 7 C 0.006 3.994 8 C -0.314 4.314 9 C -0.098 4.098 10 N -0.098 5.098 11 C 0.131 3.869 12 C -0.647 4.647 13 H 0.082 0.918 14 C -0.182 4.182 15 N -0.540 5.540 16 Si 0.904 3.096 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.211 1.211 20 N -0.130 5.130 21 N -0.303 5.303 22 C 0.319 3.681 23 O -0.329 6.329 24 C -0.194 4.194 25 C -0.193 4.193 26 C 0.319 3.681 27 O -0.357 6.357 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.248 0.752 32 H 0.177 0.823 33 H 0.186 0.814 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.242 1.322 25.062 25.098 hybrid contribution 1.155 -0.142 1.674 2.038 sum 0.913 1.179 26.735 26.777 Atomic orbital electron populations 1.22176 0.90746 1.05241 1.04193 1.21141 0.97246 0.98078 0.82680 0.84822 1.20392 0.80901 0.85020 0.83771 1.90661 1.36228 1.24749 1.85703 1.42252 1.51581 1.30715 1.02631 1.19047 0.99028 0.94912 0.86453 1.21501 1.10947 1.01767 0.97177 1.22559 0.99721 0.96521 0.91026 1.48800 1.34917 1.18483 1.07564 1.19776 1.00154 0.98053 0.68914 1.22100 0.90893 1.56749 0.94913 0.91829 1.25930 1.06586 0.93103 0.92545 1.70853 1.00209 1.45909 1.37008 0.83418 0.73161 0.76863 0.76189 1.20501 1.21214 1.21120 1.77350 1.21295 1.16637 0.97689 1.46517 1.47449 1.14654 1.21721 1.20734 0.79677 0.80261 0.87476 1.90802 1.35272 1.54095 1.52729 1.22456 1.02020 0.99455 0.95498 1.22449 1.04706 0.93353 0.98802 1.20880 0.75846 0.87996 0.83357 1.90790 1.51228 1.16927 1.76768 0.89838 0.90540 0.89677 0.75227 0.82283 0.81439 0.93583 0.94721 0.92278 0.85943 0.86210 0.85981 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.06 37.16 0.34 -1.09 16 2 C 0.11 1.21 3.12 -69.09 -0.22 1.00 16 3 H 0.13 1.22 7.41 -51.93 -0.38 0.83 16 4 C 0.52 7.61 6.76 -10.99 -0.07 7.54 16 5 O -0.50 -8.89 11.96 -10.31 -0.12 -9.01 16 6 N -0.62 -9.76 5.34 -11.13 -0.06 -9.81 16 7 C 0.26 5.28 8.11 -154.39 -1.25 4.03 16 8 C -0.28 -5.75 9.61 -39.83 -0.38 -6.13 16 9 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 10 N -0.32 -7.48 3.67 -62.56 -0.23 -7.70 16 11 C 0.25 6.35 5.57 -5.19 -0.03 6.33 16 12 C -0.61 -17.22 9.24 -34.44 -0.32 -17.54 16 13 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 14 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 15 N -0.90 -26.44 13.65 55.43 0.76 -25.68 16 16 Si 1.08 25.03 29.90 -169.99 -5.08 19.95 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 N -0.30 -6.98 12.42 31.44 0.39 -6.59 16 21 N -0.56 -5.59 2.27 -109.49 -0.25 -5.84 16 22 C 0.53 5.40 6.70 -11.08 -0.07 5.32 16 23 O -0.46 -6.55 15.13 -10.25 -0.16 -6.71 16 24 C -0.15 -0.73 7.03 -26.94 -0.19 -0.92 16 25 C -0.15 -0.62 7.03 -26.94 -0.19 -0.81 16 26 C 0.53 4.66 8.08 -11.08 -0.09 4.57 16 27 O -0.49 -5.73 17.23 5.60 0.10 -5.64 16 28 H 0.08 0.90 6.62 -51.93 -0.34 0.56 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.62 7.57 -51.92 -0.39 0.22 16 31 H 0.41 5.13 8.24 -40.82 -0.34 4.79 16 32 H 0.16 3.16 5.92 -52.49 -0.31 2.85 16 33 H 0.17 2.79 8.06 -52.48 -0.42 2.37 16 34 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 35 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 36 H 0.27 7.63 7.22 -40.82 -0.29 7.33 16 37 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -37.96 345.60 -6.85 -44.81 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.63 Total: 3.32 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.77 Total: 3.70 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.61 Total: -55.64 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.18 Total: -21.35 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.96 -6.85 -44.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524227564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.070 kcal (2) G-P(sol) polarization free energy of solvation -37.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds