Wall clock time and date at job start Tue Mar 31 2020 12:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46999 * 2 1 4 4 C 1.50696 * 109.47456 * 239.99641 * 2 1 3 5 5 O 1.21290 * 120.00012 * 240.00075 * 4 2 1 6 6 N 1.34777 * 119.99736 * 59.99964 * 4 2 1 7 7 C 1.40159 * 119.99983 * 179.97438 * 6 4 2 8 8 C 1.40409 * 125.97033 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86602 * 179.73843 * 8 7 6 10 10 N 1.34966 * 107.86079 * 0.39163 * 9 8 7 11 11 C 1.46500 * 125.97782 * 179.87198 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71059 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 N 1.31219 * 125.97718 * 179.97438 * 7 6 4 21 21 N 1.46499 * 109.46959 * 119.99606 * 2 1 3 22 22 C 1.33878 * 122.76087 * 59.71044 * 21 2 1 23 23 O 1.21223 * 125.39387 * 359.97438 * 22 21 2 24 24 C 1.51316 * 109.20414 * 179.84250 * 22 21 2 25 25 C 1.54222 * 103.55859 * 0.38790 * 24 22 21 26 26 C 1.33879 * 122.76465 * 240.00641 * 21 2 1 27 27 O 1.21228 * 125.39452 * 0.02562 * 26 21 2 28 28 H 1.08995 * 109.47649 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47278 * 300.00823 * 1 2 3 30 30 H 1.09011 * 109.46861 * 60.00149 * 1 2 3 31 31 H 0.97003 * 120.00166 * 0.02562 * 6 4 2 32 32 H 1.08002 * 126.06850 * 0.02562 * 8 7 6 33 33 H 1.08003 * 126.07024 * 180.26845 * 9 8 7 34 34 H 1.09004 * 109.47078 * 4.71821 * 11 10 9 35 35 H 1.08993 * 109.47364 * 244.71592 * 11 10 9 36 36 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 37 37 H 1.09000 * 110.79481 * 241.77160 * 24 22 21 38 38 H 1.09003 * 110.41042 * 118.81699 * 24 22 21 39 39 H 1.08994 * 110.60711 * 241.26348 * 25 24 22 40 40 H 1.09000 * 110.73905 * 118.35808 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7068 -0.2500 -2.4545 7 6 2.1745 -0.9104 -3.5988 8 6 2.9852 -2.0567 -3.6161 9 6 3.2113 -2.3856 -4.9083 10 7 2.5776 -1.4800 -5.6829 11 6 2.5633 -1.4603 -7.1477 12 6 1.1376 -1.4601 -7.6362 13 1 0.3237 -1.4729 -6.9265 14 6 0.8724 -1.4435 -8.9891 15 7 1.8636 -1.4225 -9.8532 16 14 -0.8947 -1.4425 -9.5946 17 1 -0.9093 -1.4165 -11.0793 18 1 -1.5833 -2.6674 -9.1141 19 1 -1.5964 -0.2428 -9.0716 20 7 1.9305 -0.5662 -4.8414 21 7 2.0183 -0.6905 1.1962 22 6 1.7244 -1.9686 1.4657 23 8 1.0386 -2.6918 0.7757 24 6 2.3865 -2.3680 2.7663 25 6 3.1135 -1.0828 3.2115 26 6 2.7904 -0.0938 2.1128 27 8 3.1700 1.0566 2.0696 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.1494 0.5388 -2.5435 32 1 3.3579 -2.5851 -2.7510 33 1 3.7968 -3.2230 -5.2582 34 1 3.0774 -2.3430 -7.5280 35 1 3.0696 -0.5632 -7.5039 36 1 2.7812 -1.4227 -9.5389 37 1 3.1000 -3.1762 2.6051 38 1 1.6360 -2.6585 3.5014 39 1 4.1886 -1.2515 3.2717 40 1 2.7271 -0.7326 4.1687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524227564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:54 Heat of formation + Delta-G solvation = -36.181462 kcal Electronic energy + Delta-G solvation = -26560.251492 eV Core-core repulsion = 22569.651999 eV Total energy + Delta-G solvation = -3990.599493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.18421 -42.30510 -40.62152 -39.61617 -36.97779 -36.52283 -35.75288 -35.27036 -32.82182 -31.33354 -31.02521 -28.31250 -27.08738 -26.25519 -25.04991 -23.54670 -23.17992 -22.32409 -21.24431 -20.28859 -19.28058 -18.87577 -18.37734 -18.06098 -17.67632 -17.20304 -16.91746 -16.51877 -16.00252 -15.83354 -15.64784 -15.36204 -15.25226 -15.06969 -14.87411 -14.61188 -14.31353 -14.01934 -13.92770 -13.78744 -13.57667 -13.37608 -13.23091 -13.01261 -12.63367 -12.12355 -12.07906 -11.96881 -11.77386 -11.57177 -11.42097 -11.04989 -11.02872 -10.76243 -10.71483 -9.92744 -9.30193 -8.81114 -6.58912 0.54294 0.73355 0.95752 1.24921 1.48542 1.49771 1.55920 1.72054 1.77969 2.03202 2.20527 2.46891 2.98537 3.11985 3.27579 3.32801 3.64506 3.67208 3.79119 3.80581 4.05105 4.09636 4.20614 4.50031 4.54053 4.60067 4.65276 4.73249 4.74544 4.77899 4.91941 4.94317 4.96218 5.00755 5.51005 5.72070 5.77749 5.86451 6.02760 6.21706 6.32835 6.37527 6.69646 6.79605 6.90795 7.16725 8.55697 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.002630 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.628700 B =10643.611600 C =10845.746079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.150 0.850 4 C 0.513 3.487 5 O -0.531 6.531 6 N -0.618 5.618 7 C 0.267 3.733 8 C -0.291 4.291 9 C 0.057 3.943 10 N -0.341 5.341 11 C 0.259 3.741 12 C -0.623 4.623 13 H 0.045 0.955 14 C -0.018 4.018 15 N -0.922 5.922 16 Si 1.120 2.880 17 H -0.274 1.274 18 H -0.272 1.272 19 H -0.274 1.274 20 N -0.340 5.340 21 N -0.567 5.567 22 C 0.519 3.481 23 O -0.511 6.511 24 C -0.142 4.142 25 C -0.138 4.138 26 C 0.524 3.476 27 O -0.520 6.520 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.426 0.574 32 H 0.165 0.835 33 H 0.203 0.797 34 H 0.055 0.945 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 0.783 30.281 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.010 3.990 3 H 0.167 0.833 4 C 0.299 3.701 5 O -0.405 6.405 6 N -0.268 5.268 7 C 0.012 3.988 8 C -0.322 4.322 9 C -0.091 4.091 10 N -0.123 5.123 11 C 0.140 3.860 12 C -0.661 4.661 13 H 0.063 0.937 14 C -0.218 4.218 15 N -0.558 5.558 16 Si 0.940 3.060 17 H -0.199 1.199 18 H -0.197 1.197 19 H -0.200 1.200 20 N -0.171 5.171 21 N -0.310 5.310 22 C 0.310 3.690 23 O -0.384 6.384 24 C -0.181 4.181 25 C -0.176 4.176 26 C 0.316 3.684 27 O -0.394 6.394 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.264 0.736 32 H 0.182 0.818 33 H 0.220 0.780 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.575 1.156 27.739 27.769 hybrid contribution 1.330 -0.081 0.995 1.663 sum 0.755 1.075 28.734 28.764 Atomic orbital electron populations 1.22160 0.89138 1.04267 1.06060 1.21204 0.98389 0.98164 0.81204 0.83251 1.21280 0.79864 0.84637 0.84321 1.90626 1.37515 1.26189 1.86158 1.42409 1.51693 1.31010 1.01720 1.19409 0.97747 0.94693 0.86931 1.21679 1.11204 1.01981 0.97330 1.23168 0.98735 0.96428 0.90769 1.48602 1.36743 1.19932 1.07027 1.19450 0.98641 0.97475 0.70432 1.22281 0.91804 1.57017 0.94984 0.93681 1.27287 1.09670 0.91998 0.92836 1.70948 1.00328 1.47231 1.37311 0.82884 0.69167 0.77829 0.76088 1.19882 1.19695 1.19983 1.77270 1.23145 1.17884 0.98779 1.46820 1.47665 1.15056 1.21468 1.21758 0.78748 0.79738 0.88708 1.90776 1.37641 1.55186 1.54763 1.22587 1.02573 1.00049 0.92864 1.22593 1.05906 0.91019 0.98113 1.21764 0.74580 0.88162 0.83845 1.90776 1.52387 1.18651 1.77629 0.92102 0.88099 0.88448 0.73555 0.81750 0.78046 0.92758 0.96399 0.92955 0.84697 0.83097 0.84042 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.06 71.98 0.65 -1.92 16 2 C 0.12 2.38 3.12 44.24 0.14 2.51 16 3 H 0.15 2.55 7.41 -2.39 -0.02 2.54 16 4 C 0.51 15.10 6.76 87.66 0.59 15.70 16 5 O -0.53 -18.92 11.96 12.10 0.14 -18.77 16 6 N -0.62 -19.38 5.34 -307.52 -1.64 -21.03 16 7 C 0.27 11.02 8.11 133.32 1.08 12.10 16 8 C -0.29 -11.86 9.61 22.11 0.21 -11.65 16 9 C 0.06 2.33 11.44 83.52 0.96 3.29 16 10 N -0.34 -16.42 3.67 -351.83 -1.29 -17.71 16 11 C 0.26 13.53 5.57 85.64 0.48 14.01 16 12 C -0.62 -35.89 9.24 25.60 0.24 -35.65 16 13 H 0.04 2.72 7.81 -2.91 -0.02 2.69 16 14 C -0.02 -1.02 5.46 84.65 0.46 -0.56 16 15 N -0.92 -54.30 13.65 21.45 0.29 -54.01 16 16 Si 1.12 50.11 29.90 68.60 2.05 52.16 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 N -0.34 -16.23 12.42 -54.45 -0.68 -16.90 16 21 N -0.57 -10.55 2.27 -738.14 -1.68 -12.23 16 22 C 0.52 9.89 6.70 87.99 0.59 10.48 16 23 O -0.51 -14.58 15.13 12.31 0.19 -14.39 16 24 C -0.14 -0.87 7.03 30.46 0.21 -0.65 16 25 C -0.14 -0.57 7.03 30.46 0.21 -0.35 16 26 C 0.52 8.09 8.08 87.99 0.71 8.80 16 27 O -0.52 -11.49 17.23 -2.87 -0.05 -11.54 16 28 H 0.06 1.31 6.62 -2.39 -0.02 1.29 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.30 7.57 -2.38 -0.02 1.28 16 31 H 0.43 10.55 8.24 -92.71 -0.76 9.79 16 32 H 0.17 6.55 5.92 -2.91 -0.02 6.53 16 33 H 0.20 6.48 8.06 -2.91 -0.02 6.45 16 34 H 0.05 2.72 7.94 -2.39 -0.02 2.70 16 35 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 36 H 0.26 15.19 7.22 -92.71 -0.67 14.52 16 37 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.15 0.04 8.14 -2.39 -0.02 0.03 16 39 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.16 -0.33 8.14 -2.39 -0.02 -0.35 16 Total: -1.00 -85.34 345.60 4.31 -81.03 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.44 Total: 17.28 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 6.54 Total: 16.11 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -5.00 Total: -121.88 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: 0.28 Total: -44.71 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Total: -85.34 4.31 -81.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524227564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.853 kcal (2) G-P(sol) polarization free energy of solvation -85.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds