Wall clock time and date at job start Tue Mar 31 2020 12:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.50694 * 109.47248 * 270.27463 * 4 3 2 6 6 H 1.07999 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00385 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00419 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99411 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47279 * 90.00270 * 9 7 5 11 11 H 1.48505 * 109.46775 * 209.99777 * 9 7 5 12 12 H 1.48495 * 109.47628 * 329.99523 * 9 7 5 13 13 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 14 14 O 1.21279 * 119.99925 * 179.72608 * 13 3 2 15 15 C 1.50700 * 119.99961 * 359.72839 * 13 3 2 16 16 N 1.46497 * 109.47128 * 180.02562 * 15 13 3 17 17 N 1.40439 * 126.81892 * 269.68274 * 16 15 13 18 18 C 1.30716 * 106.79404 * 179.89060 * 17 16 15 19 19 C 1.50700 * 125.53268 * 180.13254 * 18 17 16 20 20 F 1.39891 * 109.47379 * 195.31054 * 19 18 17 21 21 F 1.39906 * 109.46899 * 315.31072 * 19 18 17 22 22 F 1.39900 * 109.46991 * 75.30497 * 19 18 17 23 23 N 1.33244 * 108.94085 * 0.37670 * 18 17 16 24 24 C 1.30829 * 109.83312 * 359.75516 * 23 18 17 25 25 C 1.50692 * 125.96329 * 179.97438 * 24 23 18 26 26 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 27 27 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 29 29 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 30 30 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 31 31 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 32 32 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 33 33 H 0.96993 * 119.99970 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.46932 * 300.00223 * 15 13 3 35 35 H 1.08997 * 109.47392 * 59.99562 * 15 13 3 36 36 H 1.08998 * 109.47566 * 270.04126 * 25 24 23 37 37 H 1.08997 * 109.47526 * 30.04226 * 25 24 23 38 38 H 1.09005 * 109.47036 * 150.04273 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.6916 1.8266 -1.7003 6 1 4.3447 1.2202 -1.0904 7 6 4.1599 2.3784 -2.8739 8 7 5.4021 2.1667 -3.2503 9 14 3.0303 3.4280 -3.9283 10 1 3.1389 4.8481 -3.5081 11 1 3.4259 3.3021 -5.3542 12 1 1.6283 2.9681 -3.7613 13 6 2.2431 2.0164 1.1673 14 8 2.6522 3.1581 1.1673 15 6 1.9861 1.3081 2.4724 16 7 2.3041 2.2053 3.5859 17 7 3.5437 2.3376 4.2326 18 6 3.3901 3.2441 5.1617 19 6 4.4622 3.7174 6.1092 20 9 3.8730 4.4145 7.1693 21 9 5.1632 2.6145 6.6087 22 9 5.3457 4.5624 5.4291 23 7 2.1305 3.6779 5.1388 24 6 1.4658 3.0614 4.1955 25 6 0.0138 3.2734 3.8526 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5876 1.6880 -2.0295 32 1 2.1056 3.1398 -1.1395 33 1 5.7316 2.5552 -4.0757 34 1 0.9367 1.0183 2.5279 35 1 2.6123 0.4180 2.5322 36 1 -0.6013 2.5898 4.4377 37 1 -0.2672 4.3014 4.0814 38 1 -0.1403 3.0824 2.7906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576958774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:44 Heat of formation + Delta-G solvation = -112.234337 kcal Electronic energy + Delta-G solvation = -27448.157267 eV Core-core repulsion = 22912.403133 eV Total energy + Delta-G solvation = -4535.754134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -51.42172 -48.96064 -48.90243 -43.65741 -40.90272 -37.20012 -35.74162 -34.84471 -34.00206 -31.97881 -30.76851 -29.69706 -29.24160 -27.13825 -24.55714 -24.18489 -22.93998 -22.18855 -20.32825 -19.84797 -19.58690 -19.37191 -19.15577 -18.50819 -17.93457 -16.92393 -16.69767 -16.59687 -15.86231 -15.78512 -15.72827 -15.33278 -15.28378 -15.05102 -15.03793 -14.93284 -14.72814 -14.61583 -14.32851 -13.92866 -13.84894 -13.74652 -13.51052 -13.34252 -13.16105 -12.92868 -12.58313 -12.42130 -12.06733 -11.92770 -11.79386 -11.72704 -11.59273 -10.99766 -10.86987 -10.66304 -9.54932 -8.37427 -6.43485 -0.01677 0.56653 1.14396 1.29525 1.30816 1.34733 1.42353 1.50137 2.13143 2.18140 2.27689 2.55682 2.97459 3.05856 3.21203 3.33441 3.39883 3.85354 3.88940 4.16814 4.34566 4.42018 4.60693 4.62779 4.63635 4.77003 4.77286 4.85470 4.92780 5.03114 5.06464 5.41590 5.44431 5.48335 5.55873 6.16961 6.46776 6.51900 6.59381 7.11035 7.24507 8.79704 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.003719 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.936504 B = 7527.686068 C = 8493.909847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.088 3.912 3 N -0.587 5.587 4 C 0.228 3.772 5 C -0.539 4.539 6 H 0.026 0.974 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.229 1.229 13 C 0.484 3.516 14 O -0.585 6.585 15 C 0.111 3.889 16 N -0.350 5.350 17 N -0.283 5.283 18 C 0.124 3.876 19 C 0.582 3.418 20 F -0.149 7.149 21 F -0.158 7.158 22 F -0.168 7.168 23 N -0.532 5.532 24 C 0.305 3.695 25 C -0.079 4.079 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.018 0.982 33 H 0.268 0.732 34 H 0.191 0.809 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.910 -4.939 15.817 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.034 4.034 3 N -0.318 5.318 4 C 0.105 3.895 5 C -0.578 4.578 6 H 0.044 0.956 7 C -0.189 4.189 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.207 1.207 11 H -0.202 1.202 12 H -0.152 1.152 13 C 0.271 3.729 14 O -0.465 6.465 15 C -0.013 4.013 16 N -0.140 5.140 17 N -0.114 5.114 18 C -0.160 4.160 19 C 0.525 3.475 20 F -0.130 7.130 21 F -0.139 7.139 22 F -0.150 7.150 23 N -0.261 5.261 24 C 0.030 3.970 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.208 0.792 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.051 -4.528 15.684 22.894 hybrid contribution 0.986 0.676 -0.966 1.538 sum -15.065 -3.851 14.718 21.410 Atomic orbital electron populations 1.22200 0.92856 1.04147 1.02863 1.21989 0.96426 0.80313 1.04630 1.48016 1.63159 1.15457 1.05167 1.19325 0.94656 0.93095 0.82400 1.21585 0.97394 1.32162 1.06661 0.95589 1.25895 0.96662 0.97207 0.99115 1.70057 1.17491 1.46563 1.24573 0.85718 0.80794 0.78725 0.77712 1.20667 1.20167 1.15208 1.21152 0.78288 0.86860 0.86609 1.90749 1.47217 1.20896 1.87686 1.22246 1.08315 0.91604 0.79170 1.50027 1.05751 1.32046 1.26145 1.77975 1.03597 1.20643 1.09164 1.23802 0.94615 0.98724 0.98897 1.16162 0.78291 0.75257 0.77841 1.93252 1.83718 1.79171 1.56829 1.93256 1.79688 1.53188 1.87806 1.93266 1.69907 1.71697 1.80083 1.70250 1.02668 1.28780 1.24373 1.25467 0.97840 0.85986 0.87669 1.20838 0.81146 1.07279 1.04468 0.93372 0.88546 0.90605 0.90782 0.88004 0.92463 0.96381 0.92309 0.79226 0.83355 0.84334 0.87271 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 10.24 71.98 0.74 -1.43 16 2 C 0.09 1.92 5.93 86.38 0.51 2.43 16 3 N -0.59 -20.18 2.46 -826.18 -2.03 -22.20 16 4 C 0.23 10.19 4.23 85.63 0.36 10.56 16 5 C -0.54 -30.82 9.94 25.60 0.25 -30.57 16 6 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 7 C 0.01 0.54 5.47 84.66 0.46 1.00 16 8 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 9 Si 0.95 43.29 27.47 68.60 1.88 45.18 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.23 -9.04 6.54 99.48 0.65 -8.38 16 13 C 0.48 16.95 7.74 87.66 0.68 17.62 16 14 O -0.59 -27.94 16.01 -3.03 -0.05 -27.99 16 15 C 0.11 2.40 5.16 85.63 0.44 2.85 16 16 N -0.35 -9.94 3.12 -342.22 -1.07 -11.01 16 17 N -0.28 -9.97 12.70 -51.33 -0.65 -10.63 16 18 C 0.12 4.13 7.40 138.63 1.03 5.16 16 19 C 0.58 17.38 3.57 71.24 0.25 17.63 16 20 F -0.15 -4.05 17.16 44.97 0.77 -3.28 16 21 F -0.16 -4.44 17.30 44.97 0.78 -3.67 16 22 F -0.17 -5.41 17.30 44.97 0.78 -4.63 16 23 N -0.53 -16.31 11.00 -179.73 -1.98 -18.28 16 24 C 0.30 7.67 7.98 138.22 1.10 8.77 16 25 C -0.08 -0.98 10.01 71.23 0.71 -0.27 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.65 7.20 -2.39 -0.02 0.63 16 29 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 30 H 0.10 1.52 6.44 -2.39 -0.02 1.51 16 31 H 0.06 2.30 7.13 -2.39 -0.02 2.29 16 32 H 0.02 0.89 6.85 -2.38 -0.02 0.87 16 33 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.19 1.68 6.75 -2.38 -0.02 1.66 16 35 H 0.15 2.74 7.39 -2.39 -0.02 2.72 16 36 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 1.06 7.76 -2.38 -0.02 1.04 16 Total: -1.00 -88.18 343.43 6.34 -81.84 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: 1.06 Total: 0.42 kcal Atomic # 6 Polarization: 27.22 SS G_CDS: 6.55 Total: 33.76 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -5.43 Total: -121.63 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 9 Polarization: -13.91 SS G_CDS: 2.33 Total: -11.58 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.18 kcal Total: -88.18 6.34 -81.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576958774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.394 kcal (2) G-P(sol) polarization free energy of solvation -88.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds