Wall clock time and date at job start Tue Mar 31 2020 12:56:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.36690 * 125.57058 * 2 1
4 4 C 1.34434 * 109.63139 * 180.02562 * 3 2 1
5 5 C 1.41654 * 107.84217 * 0.02562 * 4 3 2
6 6 C 1.37898 * 125.57093 * 180.02562 * 2 1 3
7 7 C 1.38943 * 133.34850 * 359.97438 * 6 2 1
8 8 C 1.38074 * 120.26618 * 180.02562 * 7 6 2
9 9 C 1.38260 * 120.81258 * 359.97438 * 8 7 6
10 10 C 1.39307 * 120.25296 * 359.97438 * 9 8 7
11 11 C 1.47313 * 120.32093 * 179.97438 * 10 9 8
12 12 O 1.21624 * 120.00333 * 179.97438 * 11 10 9
13 13 N 1.34776 * 119.99797 * 0.02562 * 11 10 9
14 14 C 1.38990 * 119.99971 * 175.80159 * 13 11 10
15 15 C 1.38695 * 120.28697 * 34.55865 * 14 13 11
16 16 C 1.38199 * 120.03049 * 179.97438 * 15 14 13
17 17 C 1.38883 * 120.62186 * 0.03946 * 16 15 14
18 18 C 1.36452 * 120.58736 * 359.97438 * 17 16 15
19 19 C 1.40752 * 119.94420 * 359.70879 * 18 17 16
20 20 C 1.41043 * 120.30463 * 180.30050 * 19 18 17
21 21 H 1.08002 * 119.99651 * 214.96471 * 20 19 18
22 22 C 1.39961 * 120.00195 * 34.96298 * 20 19 18
23 23 N 1.30854 * 120.00244 * 355.68122 * 22 20 19
24 24 Si 1.86799 * 120.00062 * 175.67758 * 22 20 19
25 25 H 1.48503 * 109.47416 * 90.00061 * 24 22 20
26 26 H 1.48503 * 109.47182 * 210.00285 * 24 22 20
27 27 H 1.48501 * 109.46980 * 330.00122 * 24 22 20
28 28 H 1.08994 * 109.47453 * 89.97095 * 1 2 3
29 29 H 1.09001 * 109.46827 * 209.97643 * 1 2 3
30 30 H 1.08998 * 109.46907 * 329.96914 * 1 2 3
31 31 H 1.08004 * 125.18798 * 0.06021 * 3 2 1
32 32 H 1.07997 * 126.08335 * 179.97438 * 4 3 2
33 33 H 1.08004 * 119.87061 * 0.29995 * 7 6 2
34 34 H 1.08000 * 119.59485 * 180.02562 * 8 7 6
35 35 H 1.08006 * 119.87550 * 179.97438 * 9 8 7
36 36 H 0.96993 * 120.00408 * 355.79983 * 13 11 10
37 37 H 1.08000 * 119.98407 * 359.97438 * 15 14 13
38 38 H 1.08000 * 119.69157 * 180.02562 * 16 15 14
39 39 H 1.07999 * 119.70791 * 179.97438 * 17 16 15
40 40 H 1.07996 * 120.03350 * 180.02562 * 18 17 16
41 41 H 0.96998 * 119.99987 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2601 1.1118 0.0000
4 6 3.5528 0.7427 -0.0006
5 6 3.5998 -0.6731 -0.0016
6 6 2.2672 -1.1217 -0.0005
7 6 2.0001 -2.4852 -0.0007
8 6 3.0367 -3.3973 -0.0007
9 6 4.3528 -2.9737 -0.0011
10 6 4.6522 -1.6132 -0.0020
11 6 6.0540 -1.1602 -0.0018
12 8 6.3088 0.0290 -0.0031
13 7 7.0541 -2.0637 -0.0013
14 6 8.3745 -1.6388 -0.0893
15 6 8.7681 -0.4502 0.5075
16 6 10.0825 -0.0330 0.4171
17 6 11.0205 -0.7935 -0.2689
18 6 10.6609 -1.9667 -0.8658
19 6 9.3303 -2.4179 -0.7833
20 6 8.9517 -3.6326 -1.3919
21 1 7.9704 -3.7334 -1.8316
22 6 9.8476 -4.7074 -1.4261
23 7 11.0649 -4.5592 -0.9696
24 14 9.3055 -6.3534 -2.1234
25 1 9.5905 -6.3919 -3.5803
26 1 10.0469 -7.4467 -1.4450
27 1 7.8482 -6.5302 -1.8992
28 1 -0.3634 0.0005 -1.0276
29 1 -0.3633 -0.8902 0.5135
30 1 -0.3633 0.8897 0.5143
31 1 1.9042 2.1315 0.0009
32 1 4.4041 1.4072 -0.0011
33 1 0.9777 -2.8331 -0.0053
34 1 2.8167 -4.4547 -0.0012
35 1 5.1519 -3.7004 -0.0006
36 1 6.8525 -3.0104 0.0605
37 1 8.0470 0.1495 1.0430
38 1 10.3831 0.8932 0.8843
39 1 12.0437 -0.4532 -0.3307
40 1 11.3978 -2.5511 -1.3966
41 1 11.6857 -5.3042 -0.9930
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000577558363.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:09
Heat of formation + Delta-G solvation = 56.776981 kcal
Electronic energy + Delta-G solvation = -25582.839348 eV
Core-core repulsion = 22007.120098 eV
Total energy + Delta-G solvation = -3575.719250 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.127 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.49737 -39.41434 -37.30992 -36.51450 -33.76368 -33.57177 -32.97915 -30.71002
-29.52333 -28.92657 -28.12079 -26.36446 -25.21376 -23.66610 -21.69617 -21.51817
-21.02821 -20.15824 -19.13562 -17.53096 -17.11053 -16.62024 -16.18803 -15.85708
-15.48847 -15.11763 -15.02078 -14.33135 -14.20178 -13.86310 -13.75580 -13.12648
-13.07240 -12.81214 -12.74121 -12.54901 -12.37980 -12.25119 -11.74279 -11.54702
-11.37550 -11.26332 -11.16113 -11.13317 -10.87421 -10.42597 -10.03068 -9.73464
-9.60220 -9.24796 -9.11173 -8.73300 -8.16722 -7.59727 -7.25137 -6.88326
-6.57281 -4.39918 0.79293 1.60969 2.70935 2.72503 2.82359 2.97493
3.07363 3.09035 3.23986 3.48348 3.93979 3.99415 4.28610 4.52439
4.69072 4.71421 4.88794 4.89839 5.01824 5.12665 5.15825 5.36867
5.51972 5.65851 5.68058 5.85451 5.99656 6.24221 6.37512 6.49099
6.53391 6.57812 6.63638 6.74068 6.85778 7.02885 7.12832 7.19035
7.26645 7.27117 7.35188 7.72894 7.78629 8.06663 8.14752 8.19236
8.49767 8.62945 8.88744 8.91390 9.12167 10.26875
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.015063 B = 0.003818 C = 0.003103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1858.401817 B = 7332.317684 C = 9021.472002
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.083 3.917
2 N -0.488 5.488
3 C 0.037 3.963
4 C -0.179 4.179
5 C -0.055 4.055
6 C 0.078 3.922
7 C -0.109 4.109
8 C -0.108 4.108
9 C -0.110 4.110
10 C -0.078 4.078
11 C 0.541 3.459
12 O -0.533 6.533
13 N -0.632 5.632
14 C 0.025 3.975
15 C -0.093 4.093
16 C -0.216 4.216
17 C -0.120 4.120
18 C -0.140 4.140
19 C 0.096 3.904
20 C -0.470 4.470
21 H 0.075 0.925
22 C 0.074 3.926
23 N -0.808 5.808
24 Si 0.912 3.088
25 H -0.270 1.270
26 H -0.278 1.278
27 H -0.263 1.263
28 H 0.067 0.933
29 H 0.078 0.922
30 H 0.081 0.919
31 H 0.168 0.832
32 H 0.157 0.843
33 H 0.118 0.882
34 H 0.130 0.870
35 H 0.130 0.870
36 H 0.402 0.598
37 H 0.111 0.889
38 H 0.090 0.910
39 H 0.088 0.912
40 H 0.130 0.870
41 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.418 2.283 1.962 18.662
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 N -0.172 5.172
3 C -0.088 4.088
4 C -0.204 4.204
5 C -0.060 4.060
6 C -0.028 4.028
7 C -0.130 4.130
8 C -0.128 4.128
9 C -0.130 4.130
10 C -0.081 4.081
11 C 0.329 3.671
12 O -0.412 6.412
13 N -0.274 5.274
14 C -0.068 4.068
15 C -0.113 4.113
16 C -0.235 4.235
17 C -0.139 4.139
18 C -0.160 4.160
19 C 0.092 3.908
20 C -0.501 4.501
21 H 0.093 0.907
22 C -0.142 4.142
23 N -0.435 5.435
24 Si 0.737 3.263
25 H -0.195 1.195
26 H -0.203 1.203
27 H -0.187 1.187
28 H 0.086 0.914
29 H 0.097 0.903
30 H 0.100 0.900
31 H 0.185 0.815
32 H 0.175 0.825
33 H 0.136 0.864
34 H 0.148 0.852
35 H 0.148 0.852
36 H 0.239 0.761
37 H 0.129 0.871
38 H 0.108 0.892
39 H 0.106 0.894
40 H 0.148 0.852
41 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -18.409 3.006 1.983 18.758
hybrid contribution -0.329 -1.299 -0.289 1.371
sum -18.738 1.706 1.693 18.892
Atomic orbital electron populations
1.21879 0.77228 1.03989 1.02805 1.43839 1.05583 1.04536 1.63228
1.21950 0.90291 0.91165 1.05364 1.21011 0.96210 0.94040 1.09094
1.17985 0.90791 0.93823 1.03434 1.18208 0.89857 0.88489 1.06232
1.20053 0.99359 0.89169 1.04453 1.20685 0.91744 0.99068 1.01263
1.21217 0.97115 0.94380 1.00312 1.19549 0.92424 0.92773 1.03399
1.18122 0.84652 0.86260 0.78053 1.90684 1.84288 1.16229 1.49985
1.42805 1.04782 1.09797 1.70009 1.17836 0.83425 0.99788 1.05786
1.20684 0.95357 0.96048 0.99206 1.20374 0.93593 1.01085 1.08498
1.20540 0.97252 0.96230 0.99905 1.21173 0.97221 0.95024 1.02543
1.17470 0.91312 0.92169 0.89829 1.19299 1.00796 0.96091 1.33905
0.90728 1.25845 0.94231 1.00882 0.93243 1.69767 1.04740 1.32777
1.36225 0.86252 0.79773 0.80757 0.79537 1.19546 1.20305 1.18685
0.91426 0.90283 0.89990 0.81477 0.82521 0.86426 0.85241 0.85186
0.76119 0.87111 0.89180 0.89355 0.85195 0.91100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.53 11.08 59.85 0.66 1.19 16
2 N -0.49 -5.52 3.19 -121.80 -0.39 -5.91 16
3 C 0.04 0.44 11.33 -16.73 -0.19 0.25 16
4 C -0.18 -2.80 10.03 -39.62 -0.40 -3.19 16
5 C -0.05 -0.92 6.01 -106.61 -0.64 -1.56 16
6 C 0.08 1.08 6.82 -83.98 -0.57 0.51 16
7 C -0.11 -1.30 9.98 -39.38 -0.39 -1.69 16
8 C -0.11 -1.32 9.99 -39.63 -0.40 -1.71 16
9 C -0.11 -1.63 9.53 -39.18 -0.37 -2.00 16
10 C -0.08 -1.38 5.90 -104.72 -0.62 -1.99 16
11 C 0.54 11.40 7.60 -12.57 -0.10 11.30 16
12 O -0.53 -12.48 12.38 5.26 0.07 -12.41 16
13 N -0.63 -13.70 4.90 -10.48 -0.05 -13.75 16
14 C 0.03 0.64 6.33 -83.21 -0.53 0.11 16
15 C -0.09 -2.30 8.68 -39.43 -0.34 -2.64 16
16 C -0.22 -5.13 10.04 -39.36 -0.39 -5.52 16
17 C -0.12 -2.91 9.96 -39.99 -0.40 -3.31 16
18 C -0.14 -3.65 8.61 -39.28 -0.34 -3.99 16
19 C 0.10 2.53 5.56 -106.64 -0.59 1.93 16
20 C -0.47 -11.97 8.22 -37.87 -0.31 -12.28 16
21 H 0.07 1.82 7.63 -52.49 -0.40 1.42 16
22 C 0.07 1.79 5.42 -17.32 -0.09 1.70 16
23 N -0.81 -20.48 10.62 55.55 0.59 -19.89 16
24 Si 0.91 18.24 29.56 -169.99 -5.03 13.22 16
25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16
26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16
27 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16
28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
31 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16
32 H 0.16 2.64 7.00 -52.49 -0.37 2.27 16
33 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16
34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16
35 H 0.13 1.78 6.40 -52.48 -0.34 1.44 16
36 H 0.40 7.86 6.14 -40.82 -0.25 7.61 16
37 H 0.11 2.71 6.19 -52.49 -0.32 2.39 16
38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16
39 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16
40 H 0.13 3.49 6.15 -52.49 -0.32 3.17 16
41 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16
LS Contribution 345.58 15.07 5.21 5.21
Total: -1.00 -31.53 345.58 -10.13 -41.66
By element:
Atomic # 1 Polarization: 19.28 SS G_CDS: -4.52 Total: 14.76 kcal
Atomic # 6 Polarization: -16.88 SS G_CDS: -6.01 Total: -22.89 kcal
Atomic # 7 Polarization: -39.70 SS G_CDS: 0.15 Total: -39.55 kcal
Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal
Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.22 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -31.53 -10.13 -41.66 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000577558363.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.438 kcal
(2) G-P(sol) polarization free energy of solvation -31.528 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.777 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds