Wall clock time and date at job start Tue Mar 31 2020 12:56:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.36690 * 125.57058 * 2 1
4 4 C 1.34434 * 109.63139 * 180.02562 * 3 2 1
5 5 C 1.41654 * 107.84217 * 0.02562 * 4 3 2
6 6 C 1.37898 * 125.57093 * 180.02562 * 2 1 3
7 7 C 1.38943 * 133.34850 * 359.97438 * 6 2 1
8 8 C 1.38074 * 120.26618 * 180.02562 * 7 6 2
9 9 C 1.38260 * 120.81258 * 359.97438 * 8 7 6
10 10 C 1.39307 * 120.25296 * 359.97438 * 9 8 7
11 11 C 1.47313 * 120.32093 * 179.97438 * 10 9 8
12 12 O 1.21624 * 120.00333 * 179.97438 * 11 10 9
13 13 N 1.34776 * 119.99797 * 0.02562 * 11 10 9
14 14 C 1.38990 * 119.99971 * 175.80159 * 13 11 10
15 15 C 1.38695 * 120.28697 * 34.55865 * 14 13 11
16 16 C 1.38199 * 120.03049 * 179.97438 * 15 14 13
17 17 C 1.38883 * 120.62186 * 0.03946 * 16 15 14
18 18 C 1.36452 * 120.58736 * 359.97438 * 17 16 15
19 19 C 1.40752 * 119.94420 * 359.70879 * 18 17 16
20 20 C 1.41043 * 120.30463 * 180.30050 * 19 18 17
21 21 H 1.08002 * 119.99651 * 214.96471 * 20 19 18
22 22 C 1.39961 * 120.00195 * 34.96298 * 20 19 18
23 23 N 1.30854 * 120.00244 * 355.68122 * 22 20 19
24 24 Si 1.86799 * 120.00062 * 175.67758 * 22 20 19
25 25 H 1.48503 * 109.47416 * 90.00061 * 24 22 20
26 26 H 1.48503 * 109.47182 * 210.00285 * 24 22 20
27 27 H 1.48501 * 109.46980 * 330.00122 * 24 22 20
28 28 H 1.08994 * 109.47453 * 89.97095 * 1 2 3
29 29 H 1.09001 * 109.46827 * 209.97643 * 1 2 3
30 30 H 1.08998 * 109.46907 * 329.96914 * 1 2 3
31 31 H 1.08004 * 125.18798 * 0.06021 * 3 2 1
32 32 H 1.07997 * 126.08335 * 179.97438 * 4 3 2
33 33 H 1.08004 * 119.87061 * 0.29995 * 7 6 2
34 34 H 1.08000 * 119.59485 * 180.02562 * 8 7 6
35 35 H 1.08006 * 119.87550 * 179.97438 * 9 8 7
36 36 H 0.96993 * 120.00408 * 355.79983 * 13 11 10
37 37 H 1.08000 * 119.98407 * 359.97438 * 15 14 13
38 38 H 1.08000 * 119.69157 * 180.02562 * 16 15 14
39 39 H 1.07999 * 119.70791 * 179.97438 * 17 16 15
40 40 H 1.07996 * 120.03350 * 180.02562 * 18 17 16
41 41 H 0.96998 * 119.99987 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2601 1.1118 0.0000
4 6 3.5528 0.7427 -0.0006
5 6 3.5998 -0.6731 -0.0016
6 6 2.2672 -1.1217 -0.0005
7 6 2.0001 -2.4852 -0.0007
8 6 3.0367 -3.3973 -0.0007
9 6 4.3528 -2.9737 -0.0011
10 6 4.6522 -1.6132 -0.0020
11 6 6.0540 -1.1602 -0.0018
12 8 6.3088 0.0290 -0.0031
13 7 7.0541 -2.0637 -0.0013
14 6 8.3745 -1.6388 -0.0893
15 6 8.7681 -0.4502 0.5075
16 6 10.0825 -0.0330 0.4171
17 6 11.0205 -0.7935 -0.2689
18 6 10.6609 -1.9667 -0.8658
19 6 9.3303 -2.4179 -0.7833
20 6 8.9517 -3.6326 -1.3919
21 1 7.9704 -3.7334 -1.8316
22 6 9.8476 -4.7074 -1.4261
23 7 11.0649 -4.5592 -0.9696
24 14 9.3055 -6.3534 -2.1234
25 1 9.5905 -6.3919 -3.5803
26 1 10.0469 -7.4467 -1.4450
27 1 7.8482 -6.5302 -1.8992
28 1 -0.3634 0.0005 -1.0276
29 1 -0.3633 -0.8902 0.5135
30 1 -0.3633 0.8897 0.5143
31 1 1.9042 2.1315 0.0009
32 1 4.4041 1.4072 -0.0011
33 1 0.9777 -2.8331 -0.0053
34 1 2.8167 -4.4547 -0.0012
35 1 5.1519 -3.7004 -0.0006
36 1 6.8525 -3.0104 0.0605
37 1 8.0470 0.1495 1.0430
38 1 10.3831 0.8932 0.8843
39 1 12.0437 -0.4532 -0.3307
40 1 11.3978 -2.5511 -1.3966
41 1 11.6857 -5.3042 -0.9930
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000577558363.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:08
Heat of formation + Delta-G solvation = 40.134809 kcal
Electronic energy + Delta-G solvation = -25583.561007 eV
Core-core repulsion = 22007.120098 eV
Total energy + Delta-G solvation = -3576.440908 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.127 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.51820 -41.06245 -39.00577 -37.72133 -35.49776 -35.45734 -33.92118 -31.90867
-31.44286 -30.05528 -29.74026 -27.20906 -27.01941 -25.00410 -23.26163 -22.76310
-22.48537 -21.64579 -20.62588 -19.24032 -18.61264 -17.83830 -17.59104 -17.12364
-16.87513 -16.34589 -16.05266 -16.00172 -15.83935 -15.33434 -14.87530 -14.75028
-14.39721 -14.18588 -13.97296 -13.72400 -13.64667 -13.54567 -13.11196 -13.01761
-12.83755 -12.72492 -12.58105 -12.43560 -12.18360 -12.09856 -11.89694 -11.59772
-11.06480 -10.91666 -10.67279 -10.48585 -9.23313 -9.17708 -8.84121 -8.57538
-8.41947 -6.35584 -0.35066 0.57549 0.90698 1.09508 1.43128 1.52529
1.57831 1.76134 1.89734 2.04374 2.25343 2.44104 2.81541 3.01504
3.66561 3.72232 3.93479 3.98280 4.00479 4.19217 4.27257 4.49289
4.50754 4.55079 4.63209 4.67274 4.75772 4.76823 4.85893 4.96414
5.11659 5.17542 5.22310 5.35777 5.45275 5.46241 5.49959 5.71791
5.73951 5.80706 5.89219 6.15382 6.17550 6.19843 6.28419 6.41719
6.66809 6.76388 6.96853 7.02390 7.41044 8.43609
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.015063 B = 0.003818 C = 0.003103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1858.401817 B = 7332.317684 C = 9021.472002
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.073 3.927
2 N -0.480 5.480
3 C 0.074 3.926
4 C -0.238 4.238
5 C -0.083 4.083
6 C 0.062 3.938
7 C -0.085 4.085
8 C -0.114 4.114
9 C -0.105 4.105
10 C -0.124 4.124
11 C 0.538 3.462
12 O -0.568 6.568
13 N -0.633 5.633
14 C 0.018 3.982
15 C -0.109 4.109
16 C -0.218 4.218
17 C -0.123 4.123
18 C -0.163 4.163
19 C 0.068 3.932
20 C -0.491 4.491
21 H 0.077 0.923
22 C 0.033 3.967
23 N -0.837 5.837
24 Si 0.985 3.015
25 H -0.268 1.268
26 H -0.271 1.271
27 H -0.250 1.250
28 H 0.082 0.918
29 H 0.095 0.905
30 H 0.106 0.894
31 H 0.210 0.790
32 H 0.127 0.873
33 H 0.162 0.838
34 H 0.167 0.833
35 H 0.133 0.867
36 H 0.410 0.590
37 H 0.106 0.894
38 H 0.116 0.884
39 H 0.115 0.885
40 H 0.118 0.882
41 H 0.285 0.715
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.330 0.858 1.845 22.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.162 5.162
3 C -0.054 4.054
4 C -0.263 4.263
5 C -0.088 4.088
6 C -0.045 4.045
7 C -0.105 4.105
8 C -0.133 4.133
9 C -0.125 4.125
10 C -0.127 4.127
11 C 0.329 3.671
12 O -0.449 6.449
13 N -0.276 5.276
14 C -0.077 4.077
15 C -0.129 4.129
16 C -0.238 4.238
17 C -0.142 4.142
18 C -0.183 4.183
19 C 0.064 3.936
20 C -0.522 4.522
21 H 0.095 0.905
22 C -0.180 4.180
23 N -0.465 5.465
24 Si 0.806 3.194
25 H -0.193 1.193
26 H -0.196 1.196
27 H -0.173 1.173
28 H 0.101 0.899
29 H 0.114 0.886
30 H 0.125 0.875
31 H 0.226 0.774
32 H 0.145 0.855
33 H 0.179 0.821
34 H 0.185 0.815
35 H 0.151 0.849
36 H 0.247 0.753
37 H 0.124 0.876
38 H 0.134 0.866
39 H 0.133 0.867
40 H 0.136 0.864
41 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -22.364 1.572 1.875 22.497
hybrid contribution 0.738 -0.747 -0.226 1.074
sum -21.626 0.825 1.650 21.705
Atomic orbital electron populations
1.22308 0.73719 1.06182 1.04475 1.44209 1.07468 1.03364 1.61169
1.22437 0.88996 0.93000 1.00939 1.20932 0.97451 0.93900 1.14032
1.18308 0.92275 0.94307 1.03957 1.18455 0.88984 0.90064 1.06961
1.20570 1.01347 0.87989 1.00573 1.21085 0.90337 1.01125 1.00770
1.21417 0.98942 0.93073 0.99020 1.19369 0.90291 0.94553 1.08528
1.18798 0.86057 0.85688 0.76536 1.90640 1.85102 1.17631 1.51546
1.42793 1.03911 1.10394 1.70487 1.18027 0.84774 0.99690 1.05160
1.20837 0.95931 0.96335 0.99770 1.20683 0.93097 1.01905 1.08076
1.20785 0.98628 0.95543 0.99236 1.21208 0.97264 0.96014 1.03829
1.17815 0.91872 0.93140 0.90772 1.19491 1.01399 0.96550 1.34745
0.90508 1.26744 0.93936 1.04343 0.93005 1.69846 1.05803 1.34197
1.36612 0.85140 0.79984 0.75715 0.78539 1.19304 1.19565 1.17321
0.89914 0.88588 0.87510 0.77365 0.85504 0.82087 0.81517 0.84934
0.75250 0.87569 0.86557 0.86733 0.86425 0.90446
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.57 11.08 127.77 1.42 1.98 16
2 N -0.48 -9.29 3.19 -539.28 -1.72 -11.01 16
3 C 0.07 1.62 11.33 83.07 0.94 2.56 16
4 C -0.24 -7.81 10.03 22.24 0.22 -7.58 16
5 C -0.08 -2.84 6.01 -21.15 -0.13 -2.97 16
6 C 0.06 1.58 6.82 38.94 0.27 1.84 16
7 C -0.08 -1.67 9.98 22.40 0.22 -1.45 16
8 C -0.11 -2.43 9.99 22.24 0.22 -2.21 16
9 C -0.10 -3.07 9.53 22.53 0.21 -2.85 16
10 C -0.12 -4.59 5.90 -19.93 -0.12 -4.71 16
11 C 0.54 24.37 7.60 86.63 0.66 25.02 16
12 O -0.57 -28.90 12.38 -4.11 -0.05 -28.95 16
13 N -0.63 -29.17 4.90 -305.32 -1.50 -30.67 16
14 C 0.02 0.95 6.33 38.92 0.25 1.20 16
15 C -0.11 -5.64 8.68 22.37 0.19 -5.45 16
16 C -0.22 -10.63 10.04 22.42 0.22 -10.41 16
17 C -0.12 -6.10 9.96 22.01 0.22 -5.88 16
18 C -0.16 -8.90 8.61 22.47 0.19 -8.70 16
19 C 0.07 3.74 5.56 -21.17 -0.12 3.62 16
20 C -0.49 -25.86 8.22 23.38 0.19 -25.67 16
21 H 0.08 3.87 7.63 -2.91 -0.02 3.85 16
22 C 0.03 1.61 5.42 85.26 0.46 2.07 16
23 N -0.84 -43.39 10.62 21.83 0.23 -43.16 16
24 Si 0.99 37.20 29.56 68.60 2.03 39.23 16
25 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16
26 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16
27 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16
28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16
29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16
30 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16
31 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16
32 H 0.13 4.78 7.00 -2.91 -0.02 4.76 16
33 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16
34 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16
35 H 0.13 3.65 6.40 -2.91 -0.02 3.63 16
36 H 0.41 16.95 6.14 -92.71 -0.57 16.38 16
37 H 0.11 5.55 6.19 -2.91 -0.02 5.53 16
38 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16
39 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16
40 H 0.12 6.62 6.15 -2.91 -0.02 6.60 16
41 H 0.28 13.44 8.30 -92.71 -0.77 12.67 16
Total: -1.00 -74.60 345.58 5.03 -69.57
By element:
Atomic # 1 Polarization: 44.06 SS G_CDS: 0.51 Total: 44.57 kcal
Atomic # 6 Polarization: -45.11 SS G_CDS: 5.53 Total: -39.57 kcal
Atomic # 7 Polarization: -81.86 SS G_CDS: -2.99 Total: -84.84 kcal
Atomic # 8 Polarization: -28.90 SS G_CDS: -0.05 Total: -28.95 kcal
Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal
Total: -74.60 5.03 -69.57 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000577558363.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.704 kcal
(2) G-P(sol) polarization free energy of solvation -74.603 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.135 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds