Wall clock time and date at job start Tue Mar 31 2020 13:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34420 * 124.34431 * 2 1 4 4 O 1.21280 * 124.94524 * 0.42559 * 3 2 1 5 5 C 1.51285 * 110.11590 * 180.39089 * 3 2 1 6 6 C 1.54625 * 104.19208 * 16.25175 * 5 3 2 7 7 C 1.46759 * 124.35571 * 179.97438 * 2 1 3 8 8 H 1.09004 * 110.24546 * 43.99604 * 7 2 1 9 9 C 1.50703 * 110.31470 * 282.04340 * 7 2 1 10 10 O 1.21284 * 119.99966 * 343.89963 * 9 7 2 11 11 N 1.34779 * 119.99527 * 163.90499 * 9 7 2 12 12 C 1.46500 * 120.00407 * 354.39315 * 11 9 7 13 13 C 1.50701 * 109.47331 * 89.99488 * 12 11 9 14 14 H 1.07998 * 119.99705 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99835 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99833 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99657 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47559 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46943 * 120.00213 * 17 15 13 20 20 H 1.48504 * 109.46981 * 239.99833 * 17 15 13 21 21 C 1.40035 * 119.99877 * 174.38614 * 11 9 7 22 22 C 1.38850 * 120.04510 * 303.46442 * 21 11 9 23 23 C 1.38114 * 119.95348 * 179.72003 * 22 21 11 24 24 C 1.38475 * 120.04121 * 0.54609 * 23 22 21 25 25 F 1.35101 * 119.95285 * 179.74395 * 24 23 22 26 26 C 1.38477 * 120.09351 * 359.72853 * 24 23 22 27 27 C 1.38110 * 120.04339 * 359.97438 * 26 24 23 28 28 H 1.09007 * 109.46906 * 270.01786 * 1 2 3 29 29 H 1.08998 * 109.47572 * 30.01995 * 1 2 3 30 30 H 1.08999 * 109.46902 * 150.02584 * 1 2 3 31 31 H 1.09000 * 110.48190 * 257.57873 * 5 3 2 32 32 H 1.09000 * 110.48919 * 134.93085 * 5 3 2 33 33 H 1.09006 * 110.97144 * 217.08626 * 6 5 3 34 34 H 1.08997 * 110.97188 * 93.32735 * 6 5 3 35 35 H 1.08996 * 109.47046 * 209.99998 * 12 11 9 36 36 H 1.09005 * 109.46677 * 329.99678 * 12 11 9 37 37 H 0.96997 * 119.99843 * 179.97438 * 16 15 13 38 38 H 1.07997 * 120.02491 * 359.97438 * 22 21 11 39 39 H 1.07999 * 119.97977 * 180.25300 * 23 22 21 40 40 H 1.07999 * 119.97907 * 179.97438 * 26 24 23 41 41 H 1.08002 * 120.02237 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7945 2.2443 0.0074 5 6 3.6898 0.7380 -0.0097 6 6 3.7011 -0.7485 -0.4350 7 6 2.2932 -1.2116 0.0005 8 1 1.8987 -1.9385 -0.7095 9 6 2.3450 -1.8093 1.3830 10 8 2.0066 -1.1488 2.3423 11 7 2.7675 -3.0778 1.5532 12 6 3.0591 -3.9155 0.3873 13 6 4.5065 -3.7521 0.0006 14 1 5.1454 -3.0908 0.5671 15 6 5.0153 -4.4478 -1.0756 16 7 4.2374 -5.2536 -1.7649 17 14 6.8095 -4.2458 -1.5544 18 1 7.4650 -3.2897 -0.6263 19 1 7.4943 -5.5611 -1.4742 20 1 6.8959 -3.7266 -2.9430 21 6 2.9279 -3.5950 2.8447 22 6 3.7624 -2.9548 3.7512 23 6 3.9147 -3.4633 5.0263 24 6 3.2447 -4.6171 5.3971 25 9 3.3990 -5.1158 6.6432 26 6 2.4165 -5.2602 4.4927 27 6 2.2567 -4.7515 3.2186 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 4.1191 0.8533 0.9856 32 1 4.2328 1.3460 -0.7333 33 1 4.4754 -1.3008 0.0976 34 1 3.8274 -0.8448 -1.5134 35 1 2.8640 -4.9595 0.6322 36 1 2.4242 -3.6128 -0.4454 37 1 4.5952 -5.7427 -2.5223 38 1 4.2888 -2.0576 3.4608 39 1 4.5605 -2.9634 5.7330 40 1 1.8951 -6.1601 4.7837 41 1 1.6110 -5.2536 2.5134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590634106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:48 Heat of formation + Delta-G solvation = -75.180468 kcal Electronic energy + Delta-G solvation = -27602.931457 eV Core-core repulsion = 23590.720878 eV Total energy + Delta-G solvation = -4012.210579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.67284 -40.85134 -39.50133 -37.88255 -35.85123 -35.26522 -32.81974 -32.54441 -30.94392 -29.78107 -27.75763 -27.09845 -26.43434 -23.59384 -23.10309 -22.49911 -21.68954 -19.83689 -18.74609 -17.58404 -17.27110 -16.91827 -16.54332 -16.33267 -15.92961 -15.38609 -15.22672 -15.06985 -14.56989 -14.33398 -14.18554 -13.57212 -13.41100 -13.32371 -13.25785 -12.90054 -12.68325 -12.60446 -12.36552 -12.24085 -12.09010 -11.94285 -11.68059 -11.26851 -11.16778 -11.04011 -10.91075 -10.86532 -10.31029 -10.03839 -9.73635 -9.52875 -8.91224 -8.88208 -8.77098 -8.42713 -7.69168 -6.38561 -4.46804 1.35240 1.47778 2.76473 2.90730 3.07778 3.09865 3.20700 3.22823 3.61346 3.85812 4.17093 4.48875 4.57040 4.76692 4.90335 4.94755 5.00276 5.05257 5.17875 5.36753 5.42763 5.47012 5.55451 5.60271 5.72164 5.77189 5.87943 5.91073 6.08996 6.23437 6.32514 6.38516 6.39107 6.51159 6.56889 6.65307 6.87374 6.98306 7.24173 7.38047 7.54468 7.77576 7.87823 8.36292 8.51230 8.64631 9.21335 10.68149 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.006186 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.355414 B = 4525.398616 C = 6801.640091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.601 5.601 3 C 0.526 3.474 4 O -0.543 6.543 5 C -0.159 4.159 6 C -0.111 4.111 7 C 0.122 3.878 8 H 0.118 0.882 9 C 0.509 3.491 10 O -0.541 6.541 11 N -0.553 5.553 12 C 0.234 3.766 13 C -0.541 4.541 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.169 3.831 22 C -0.084 4.084 23 C -0.140 4.140 24 C 0.075 3.925 25 F -0.147 7.147 26 C -0.140 4.140 27 C -0.101 4.101 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.267 0.733 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 1.798 4.009 5.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.334 5.334 3 C 0.314 3.686 4 O -0.421 6.421 5 C -0.199 4.199 6 C -0.149 4.149 7 C 0.015 3.985 8 H 0.136 0.864 9 C 0.297 3.703 10 O -0.419 6.419 11 N -0.280 5.280 12 C 0.115 3.885 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.133 4.133 16 N -0.524 5.524 17 Si 0.721 3.279 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.206 1.206 21 C 0.077 3.923 22 C -0.104 4.104 23 C -0.160 4.160 24 C 0.056 3.944 25 F -0.126 7.126 26 C -0.159 4.159 27 C -0.121 4.121 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.137 2.613 4.331 5.952 hybrid contribution 1.028 -0.463 -0.160 1.139 sum -2.109 2.151 4.170 5.144 Atomic orbital electron populations 1.21535 0.78111 1.02708 1.02078 1.47888 1.06335 1.06508 1.72682 1.20872 0.89474 0.84020 0.74201 1.90669 1.79027 1.21089 1.51316 1.22426 0.94409 0.98429 1.04657 1.22657 0.94812 0.93550 1.03843 1.21607 0.94066 0.87884 0.94938 0.86415 1.20944 0.76810 0.81177 0.91403 1.90679 1.48315 1.60633 1.42232 1.46053 1.63300 1.12754 1.05911 1.19721 0.97256 0.90587 0.80894 1.21386 0.94748 1.27660 1.14094 0.91559 1.24887 0.98111 0.94501 0.95835 1.69904 1.35854 1.27143 1.19452 0.86498 0.84448 0.78384 0.78605 1.19427 1.20793 1.20633 1.17647 0.94847 0.94079 0.85739 1.20966 0.96640 1.00241 0.92562 1.20911 1.01728 0.95992 0.97355 1.17614 1.01075 0.95405 0.80353 1.91455 1.94702 1.87222 1.39199 1.20883 1.00425 1.01236 0.93402 1.20971 0.99055 0.96555 0.95506 0.92458 0.90705 0.91119 0.87996 0.87969 0.86780 0.88628 0.93840 0.93843 0.92295 0.85277 0.84944 0.84818 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 10.95 59.85 0.66 1.99 16 2 N -0.60 -9.69 2.55 -174.02 -0.44 -10.14 16 3 C 0.53 9.09 8.02 -10.86 -0.09 9.00 16 4 O -0.54 -10.94 17.60 5.56 0.10 -10.84 16 5 C -0.16 -2.29 6.85 -26.74 -0.18 -2.47 16 6 C -0.11 -1.65 6.01 -25.10 -0.15 -1.80 16 7 C 0.12 1.97 2.72 -68.16 -0.19 1.78 16 8 H 0.12 1.82 6.34 -51.93 -0.33 1.49 16 9 C 0.51 9.27 6.62 -10.98 -0.07 9.20 16 10 O -0.54 -11.11 15.93 5.55 0.09 -11.02 16 11 N -0.55 -10.17 2.57 -114.71 -0.29 -10.47 16 12 C 0.23 4.69 4.83 -5.19 -0.03 4.66 16 13 C -0.54 -11.83 7.60 -34.44 -0.26 -12.09 16 14 H 0.07 1.46 6.81 -52.49 -0.36 1.10 16 15 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -21.68 13.29 55.43 0.74 -20.94 16 17 Si 0.89 18.37 29.54 -169.99 -5.02 13.35 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 C 0.17 3.02 5.17 -83.66 -0.43 2.59 16 22 C -0.08 -1.42 8.94 -39.40 -0.35 -1.77 16 23 C -0.14 -2.11 10.02 -39.54 -0.40 -2.51 16 24 C 0.07 1.13 7.30 -39.41 -0.29 0.84 16 25 F -0.15 -2.16 17.27 2.25 0.04 -2.13 16 26 C -0.14 -2.02 10.02 -39.54 -0.40 -2.42 16 27 C -0.10 -1.61 9.31 -39.40 -0.37 -1.97 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.98 7.93 -51.93 -0.41 0.56 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.11 1.85 5.59 -51.93 -0.29 1.56 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.04 0.94 7.32 -51.93 -0.38 0.56 16 36 H 0.04 0.88 6.08 -51.93 -0.32 0.56 16 37 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 38 H 0.13 2.16 8.05 -52.49 -0.42 1.74 16 39 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 1.97 7.80 -52.49 -0.41 1.56 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -28.13 350.92 -7.16 -35.29 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.01 Total: 5.04 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.64 Total: 6.57 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.00 Total: -41.54 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: 0.19 Total: -21.86 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.13 -7.16 -35.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590634106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.892 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds