Wall clock time and date at job start Tue Mar 31 2020 13:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99843 * 2 1 4 4 C 1.53005 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47123 * 64.99938 * 4 3 2 6 6 C 1.37098 * 119.99721 * 269.72493 * 5 4 3 7 7 H 1.08003 * 120.00373 * 138.66636 * 6 5 4 8 8 C 1.38951 * 120.00022 * 318.66606 * 6 5 4 9 9 N 1.31408 * 119.99809 * 352.36351 * 8 6 5 10 10 Si 1.86800 * 120.00051 * 172.37300 * 8 6 5 11 11 H 1.48505 * 109.47222 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47362 * 119.99483 * 10 8 6 13 13 H 1.48502 * 109.47076 * 239.99765 * 10 8 6 14 14 C 1.34772 * 120.00419 * 89.99546 * 5 4 3 15 15 O 1.21293 * 119.99809 * 355.33376 * 14 5 4 16 16 C 1.50703 * 120.00392 * 175.32531 * 14 5 4 17 17 C 1.50700 * 109.47437 * 185.24202 * 16 14 5 18 18 C 1.34246 * 126.49362 * 265.03172 * 17 16 14 19 19 N 1.36806 * 109.93036 * 179.97438 * 18 17 16 20 20 H 0.97000 * 125.07061 * 180.02562 * 19 18 17 21 21 C 1.37819 * 109.86277 * 359.97438 * 19 18 17 22 22 C 1.39098 * 133.39236 * 180.02562 * 21 19 18 23 23 C 1.37723 * 119.94753 * 179.30475 * 22 21 19 24 24 C 1.39035 * 120.64786 * 0.56414 * 23 22 21 25 25 F 1.35099 * 119.83009 * 179.61850 * 24 23 22 26 26 C 1.37790 * 120.33373 * 359.63816 * 24 23 22 27 27 C 1.39670 * 119.62936 * 0.02562 * 26 24 23 28 28 H 1.08998 * 109.47799 * 300.00535 * 1 2 3 29 29 H 1.09005 * 109.47068 * 60.00839 * 1 2 3 30 30 H 1.09005 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47640 * 59.99545 * 3 2 1 32 32 H 1.09002 * 109.47022 * 299.99180 * 3 2 1 33 33 H 1.08993 * 109.47077 * 305.00097 * 4 3 2 34 34 H 1.08996 * 109.47270 * 184.99505 * 4 3 2 35 35 H 0.97003 * 119.99641 * 185.00257 * 9 8 6 36 36 H 1.09001 * 109.47069 * 305.24494 * 16 14 5 37 37 H 1.08996 * 109.46747 * 65.24022 * 16 14 5 38 38 H 1.07999 * 125.03315 * 359.92223 * 18 17 16 39 39 H 1.07998 * 120.02731 * 359.94588 * 22 21 19 40 40 H 1.07996 * 119.67203 * 180.20306 * 23 22 21 41 41 H 1.07998 * 120.18310 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1033 -0.7987 -1.3327 7 1 3.7725 -1.3196 -2.2191 8 6 4.6575 -1.5097 -0.2753 9 7 5.1963 -0.8681 0.7371 10 14 4.6368 -3.3775 -0.2930 11 1 3.9770 -3.8535 -1.5354 12 1 6.0303 -3.8885 -0.2451 13 1 3.8860 -3.8754 0.8876 14 6 4.2633 1.3328 -2.3200 15 8 4.0754 2.5302 -2.2738 16 6 4.8173 0.7048 -3.5730 17 6 5.1697 1.7851 -4.5628 18 6 4.3934 2.2388 -5.5596 19 7 5.0478 3.2221 -6.2499 20 1 4.6883 3.7014 -7.0127 21 6 6.2938 3.4309 -5.6991 22 6 7.3416 4.2931 -6.0052 23 6 8.4887 4.2787 -5.2431 24 6 8.6178 3.4004 -4.1731 25 9 9.7535 3.3950 -3.4414 26 6 7.5936 2.5351 -3.8556 27 6 6.4218 2.5437 -4.6155 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8507 0.5685 0.8426 34 1 3.9784 2.1765 0.0901 35 1 5.6472 -1.3621 1.4396 36 1 5.7112 0.1314 -3.3273 37 1 4.0693 0.0427 -4.0088 38 1 3.3997 1.8801 -5.7840 39 1 7.2516 4.9805 -6.8333 40 1 9.2981 4.9524 -5.4827 41 1 7.6963 1.8542 -3.0236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:25 Heat of formation + Delta-G solvation = -59.551285 kcal Electronic energy + Delta-G solvation = -26905.268226 eV Core-core repulsion = 22893.735380 eV Total energy + Delta-G solvation = -4011.532847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.47503 -41.00756 -38.48919 -36.87886 -36.35713 -34.59293 -32.61437 -31.44486 -30.19329 -29.00766 -28.68644 -26.53963 -25.67127 -24.50629 -22.87689 -21.89262 -21.67935 -19.54759 -18.82328 -17.82035 -17.03946 -16.51825 -16.10344 -15.96955 -15.36269 -15.27601 -15.17879 -14.99987 -14.38363 -14.28584 -14.08860 -13.87853 -13.79072 -13.50917 -12.89725 -12.60472 -12.58428 -12.39347 -11.96140 -11.82261 -11.55210 -11.22762 -11.06470 -11.04382 -10.91674 -10.73711 -10.63597 -10.42442 -10.24897 -9.97587 -9.42749 -9.03061 -8.89727 -8.36342 -7.90530 -7.36092 -7.32361 -6.19069 -3.99169 1.22170 1.64389 2.95209 3.20533 3.30106 3.30354 3.32571 3.95271 4.00832 4.23683 4.55708 4.59915 4.81921 4.95869 5.08812 5.16397 5.20290 5.42010 5.53364 5.69031 5.71593 5.76611 5.95783 6.02488 6.05229 6.07987 6.12830 6.17313 6.30154 6.41090 6.46610 6.50413 6.55145 6.65913 6.84219 6.96660 7.08926 7.33262 7.41279 7.65110 7.72534 7.92712 8.14701 8.50544 9.22341 9.63323 10.05198 10.81064 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.004063 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.503753 B = 6890.501520 C = 7769.523908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.106 3.894 5 N -0.434 5.434 6 C -0.313 4.313 7 H 0.084 0.916 8 C 0.048 3.952 9 N -0.874 5.874 10 Si 0.918 3.082 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.474 3.526 15 O -0.602 6.602 16 C -0.052 4.052 17 C -0.123 4.123 18 C 0.053 3.947 19 N -0.596 5.596 20 H 0.413 0.587 21 C 0.086 3.914 22 C -0.108 4.108 23 C -0.136 4.136 24 C 0.060 3.940 25 F -0.146 7.146 26 C -0.092 4.092 27 C -0.064 4.064 28 H 0.028 0.972 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.268 0.732 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.168 0.832 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 4.970 -10.805 11.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.018 4.018 5 N -0.153 5.153 6 C -0.442 4.442 7 H 0.102 0.898 8 C -0.157 4.157 9 N -0.513 5.513 10 Si 0.746 3.254 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.207 1.207 14 C 0.263 3.737 15 O -0.488 6.488 16 C -0.092 4.092 17 C -0.130 4.130 18 C -0.072 4.072 19 N -0.200 5.200 20 H 0.249 0.751 21 C -0.021 4.021 22 C -0.129 4.129 23 C -0.156 4.156 24 C 0.039 3.961 25 F -0.125 7.125 26 C -0.111 4.111 27 C -0.069 4.069 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.186 0.814 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.095 5.355 -10.609 11.934 hybrid contribution -0.368 -0.497 -0.022 0.619 sum -1.463 4.858 -10.631 11.779 Atomic orbital electron populations 1.22632 0.83790 1.01581 0.98665 1.88162 1.17010 1.27789 1.94973 1.23025 0.96977 0.84117 0.98154 1.21664 0.88886 0.99024 0.92217 1.43314 1.56661 1.06127 1.09190 1.19347 1.39834 0.80972 1.04020 0.89803 1.25368 0.94842 0.99843 0.95606 1.69607 1.34649 1.35856 1.11162 0.86005 0.77667 0.83298 0.78453 1.19371 1.20948 1.20747 1.20417 0.80764 0.86397 0.86122 1.90527 1.58497 1.15423 1.84322 1.19769 1.02423 0.94877 0.92130 1.19976 0.92855 1.01567 0.98569 1.21528 0.97863 0.92477 0.95357 1.41592 1.13182 1.34984 1.30204 0.75092 1.18217 0.87556 0.99748 0.96571 1.19695 0.91797 0.99865 1.01507 1.20630 0.98750 1.00349 0.95844 1.17252 0.83919 1.00671 0.94223 1.91457 1.48573 1.96061 1.76439 1.20530 0.91398 0.99113 1.00068 1.18780 0.94474 0.97937 0.95755 0.95312 0.95181 0.90536 0.94681 0.94540 0.85554 0.91684 0.92167 0.88599 0.89588 0.81432 0.85731 0.84973 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.83 10.19 -35.23 -0.36 -8.19 16 3 C 0.06 1.18 6.28 37.16 0.23 1.41 16 4 C 0.11 2.57 5.38 -4.04 -0.02 2.55 16 5 N -0.43 -10.84 2.50 -114.81 -0.29 -11.12 16 6 C -0.31 -7.84 8.00 -14.93 -0.12 -7.96 16 7 H 0.08 2.02 7.33 -52.48 -0.38 1.63 16 8 C 0.05 1.20 5.24 -17.47 -0.09 1.11 16 9 N -0.87 -23.15 10.93 55.50 0.61 -22.54 16 10 Si 0.92 19.88 29.56 -169.99 -5.03 14.85 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.47 11.34 7.61 -10.99 -0.08 11.26 16 15 O -0.60 -15.71 15.67 5.55 0.09 -15.62 16 16 C -0.05 -1.02 4.98 -29.03 -0.14 -1.16 16 17 C -0.12 -2.21 4.82 -102.71 -0.49 -2.70 16 18 C 0.05 0.77 11.73 -16.74 -0.20 0.57 16 19 N -0.60 -7.57 6.07 -10.64 -0.06 -7.64 16 20 H 0.41 3.57 8.96 -40.82 -0.37 3.21 16 21 C 0.09 1.30 7.27 -83.95 -0.61 0.69 16 22 C -0.11 -1.38 10.06 -39.45 -0.40 -1.78 16 23 C -0.14 -1.84 9.99 -39.47 -0.39 -2.23 16 24 C 0.06 0.97 7.29 -39.45 -0.29 0.69 16 25 F -0.15 -2.44 17.26 2.25 0.04 -2.40 16 26 C -0.09 -1.66 10.07 -39.21 -0.40 -2.05 16 27 C -0.06 -1.16 6.35 -105.14 -0.67 -1.82 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.13 3.32 5.25 -51.93 -0.27 3.05 16 34 H 0.06 1.61 7.49 -51.93 -0.39 1.22 16 35 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 36 H 0.10 1.92 8.02 -51.93 -0.42 1.50 16 37 H 0.09 1.52 7.86 -51.93 -0.41 1.12 16 38 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -31.69 355.76 -7.38 -39.07 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.18 Total: 8.06 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.56 Total: 0.17 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.26 Total: -41.30 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.27 Total: -23.81 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.69 -7.38 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.482 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds