Wall clock time and date at job start Tue Mar 31 2020 12:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.47179 * 2 1 4 4 C 1.50701 * 109.47147 * 240.00362 * 2 1 3 5 5 H 1.08008 * 119.99953 * 239.99242 * 4 2 1 6 6 C 1.37878 * 120.00100 * 59.99688 * 4 2 1 7 7 N 1.31508 * 120.00092 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47209 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46744 * 120.00150 * 8 6 4 11 11 H 1.48497 * 109.47012 * 239.99882 * 8 6 4 12 12 C 1.50700 * 109.47350 * 120.00124 * 2 1 3 13 13 N 1.31137 * 126.54944 * 239.99890 * 12 2 1 14 14 C 1.34495 * 105.60976 * 180.02562 * 13 12 2 15 15 C 1.50698 * 126.28125 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47184 * 90.00218 * 15 14 13 17 17 C 1.52997 * 109.47127 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47269 * 179.97438 * 17 16 15 19 19 C 1.35950 * 117.00394 * 179.97438 * 18 17 16 20 20 C 1.38710 * 120.02568 * 359.71956 * 19 18 17 21 21 C 1.38148 * 119.96392 * 179.78870 * 20 19 18 22 22 C 1.38453 * 120.03541 * 0.49461 * 21 20 19 23 23 F 1.35098 * 119.97462 * 179.72159 * 22 21 20 24 24 C 1.38454 * 120.05656 * 359.73959 * 22 21 20 25 25 C 1.38156 * 120.03255 * 0.02562 * 24 22 21 26 26 N 1.29941 * 107.42634 * 0.24092 * 14 13 12 27 27 O 1.21299 * 110.25491 * 359.58509 * 26 14 13 28 28 H 1.08995 * 109.47079 * 299.99838 * 1 2 3 29 29 H 1.09002 * 109.47393 * 59.99710 * 1 2 3 30 30 H 1.09008 * 109.47179 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00155 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47612 * 330.00273 * 15 14 13 33 33 H 1.09001 * 109.47122 * 210.00104 * 15 14 13 34 34 H 1.09001 * 109.47002 * 299.99404 * 16 15 14 35 35 H 1.08993 * 109.46955 * 59.99842 * 16 15 14 36 36 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 37 37 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 38 38 H 1.07996 * 120.01530 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.98415 * 180.20929 * 21 20 19 40 40 H 1.08000 * 119.98446 * 180.02562 * 24 22 21 41 41 H 1.07996 * 120.01760 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2861 -3.6039 10 1 1.1678 -1.5864 -4.8165 11 1 3.1471 -0.1855 -4.8161 12 6 2.0323 -0.7104 1.2304 13 7 2.7893 -0.2007 2.1721 14 6 2.9819 -1.1936 3.0587 15 6 3.7896 -1.1112 4.3283 16 6 2.8854 -0.6671 5.4800 17 6 3.7053 -0.5841 6.7691 18 8 2.8611 -0.1688 7.8447 19 6 3.4377 -0.0447 9.0695 20 6 4.7868 -0.3228 9.2329 21 6 5.3725 -0.1920 10.4773 22 6 4.6113 0.2065 11.5630 23 9 5.1841 0.3286 12.7805 24 6 3.2636 0.4797 11.4022 25 6 2.6763 0.3545 10.1580 26 7 2.3485 -2.2384 2.6165 27 8 1.7921 -1.9805 1.5700 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7094 1.1619 -3.4844 32 1 4.5957 -0.3888 4.2000 33 1 4.2117 -2.0903 4.5546 34 1 2.4634 0.3121 5.2538 35 1 2.0794 -1.3894 5.6084 36 1 4.1271 -1.5634 6.9952 37 1 4.5117 0.1380 6.6410 38 1 5.3798 -0.6377 8.3871 39 1 6.4236 -0.4052 10.6042 40 1 2.6711 0.7909 12.2498 41 1 1.6249 0.5673 10.0329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596586275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:26 Heat of formation + Delta-G solvation = -8.994146 kcal Electronic energy + Delta-G solvation = -24738.859590 eV Core-core repulsion = 20729.519066 eV Total energy + Delta-G solvation = -4009.340525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.16275 -44.80344 -40.47895 -37.79169 -35.92453 -35.09533 -33.60132 -31.90060 -31.60721 -29.97872 -29.53099 -27.28379 -25.42191 -24.00729 -23.48432 -22.95789 -22.25015 -21.60885 -19.90761 -18.67249 -17.73671 -17.45249 -16.94781 -16.75037 -16.57617 -16.07047 -15.84999 -15.17701 -15.11048 -14.87493 -14.35164 -14.08217 -13.82488 -13.69346 -13.48960 -13.02973 -12.81033 -12.76472 -12.64415 -11.95321 -11.79880 -11.73653 -11.44813 -11.23248 -11.14961 -11.07429 -10.86736 -10.74928 -10.63989 -10.44333 -10.33485 -10.10684 -9.62518 -9.51329 -8.92462 -8.61287 -8.48943 -6.25584 -4.34988 0.72434 0.81337 1.91017 2.66137 2.99011 3.15764 3.20156 3.28613 3.33620 3.78276 3.91871 4.09550 4.24661 4.28037 4.35053 4.51172 4.64726 4.70369 4.74553 4.88066 4.90920 5.03351 5.07836 5.25907 5.29972 5.38591 5.44695 5.69369 5.72775 5.79425 5.80892 5.95350 6.03412 6.29375 6.47242 6.54418 6.63134 6.79842 6.83266 6.98448 7.34571 7.58724 7.76640 7.96646 8.64436 8.91266 9.31504 10.80648 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.041167 B = 0.001735 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.995572 B =16133.335182 C =16362.888151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.124 3.876 3 H 0.076 0.924 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.246 3.754 13 N -0.515 5.515 14 C 0.155 3.845 15 C -0.016 4.016 16 C -0.113 4.113 17 C 0.061 3.939 18 O -0.309 6.309 19 C 0.127 3.873 20 C -0.182 4.182 21 C -0.112 4.112 22 C 0.054 3.946 23 F -0.143 7.143 24 C -0.113 4.113 25 C -0.125 4.125 26 N -0.408 5.408 27 O 0.070 5.930 28 H 0.017 0.983 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 -0.996 23.080 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.103 3.897 3 H 0.093 0.907 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.028 3.972 13 N -0.249 5.249 14 C -0.118 4.118 15 C -0.055 4.055 16 C -0.152 4.152 17 C -0.014 4.014 18 O -0.222 6.222 19 C 0.081 3.919 20 C -0.201 4.201 21 C -0.130 4.130 22 C 0.035 3.965 23 F -0.122 7.122 24 C -0.131 4.131 25 C -0.144 4.144 26 N -0.120 5.120 27 O 0.015 5.985 28 H 0.036 0.964 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.519 -1.293 23.526 24.199 hybrid contribution 0.643 -0.433 -0.812 1.123 sum 6.162 -1.726 22.713 23.598 Atomic orbital electron populations 1.21856 0.95520 1.00673 1.01663 1.17853 0.93887 0.95304 0.82623 0.90672 1.20908 1.32912 1.13211 0.89169 0.91909 1.24882 0.94522 0.94843 0.99091 1.69856 1.35693 1.22340 1.24192 0.86326 0.78777 0.79634 0.82128 1.19589 1.20610 1.20713 1.30185 0.89389 0.80891 0.96731 1.71961 1.19473 1.29600 1.03846 1.25433 1.00723 0.86312 0.99321 1.19613 0.95974 1.03549 0.86412 1.21460 0.98734 1.04216 0.90797 1.22871 0.93429 0.99856 0.85239 1.86105 1.38587 1.82683 1.14862 1.19060 0.91474 0.95732 0.85640 1.21182 0.94281 1.06183 0.98471 1.20953 1.00634 0.99987 0.91468 1.17585 0.92028 1.06118 0.80815 1.91491 1.84961 1.94082 1.41617 1.20971 0.93242 1.00790 0.98132 1.20329 1.00904 1.03331 0.89818 1.74516 1.13881 1.24268 0.99370 1.85254 1.54022 1.30729 1.28471 0.96404 0.88031 0.94169 0.92353 0.88665 0.89317 0.89803 0.90309 0.91488 0.91301 0.84262 0.84447 0.84051 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.95 37.15 0.33 -2.76 16 2 C 0.12 2.96 2.77 -92.93 -0.26 2.70 16 3 H 0.08 1.90 8.14 -51.92 -0.42 1.48 16 4 C -0.52 -13.55 8.55 -34.44 -0.29 -13.84 16 5 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -23.19 11.32 55.43 0.63 -22.56 16 8 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.25 5.50 6.96 -13.06 -0.09 5.41 16 13 N -0.51 -10.81 11.55 -9.87 -0.11 -10.93 16 14 C 0.16 2.82 7.47 -156.38 -1.17 1.65 16 15 C -0.02 -0.20 5.84 -27.88 -0.16 -0.37 16 16 C -0.11 -1.24 5.57 -26.73 -0.15 -1.39 16 17 C 0.06 0.52 4.74 37.16 0.18 0.70 16 18 O -0.31 -3.19 10.14 -19.58 -0.20 -3.39 16 19 C 0.13 1.18 6.69 -39.24 -0.26 0.92 16 20 C -0.18 -1.45 9.04 -39.44 -0.36 -1.80 16 21 C -0.11 -0.87 10.02 -39.54 -0.40 -1.26 16 22 C 0.05 0.47 7.30 -39.42 -0.29 0.18 16 23 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 24 C -0.11 -0.87 10.02 -39.53 -0.40 -1.26 16 25 C -0.13 -1.04 9.99 -39.44 -0.39 -1.43 16 26 N -0.41 -8.15 12.16 30.90 0.38 -7.78 16 27 O 0.07 1.53 11.31 18.10 0.20 1.74 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 30 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.47 7.65 -51.93 -0.40 0.07 16 37 H 0.07 0.49 7.67 -51.93 -0.40 0.10 16 38 H 0.14 0.84 6.30 -52.49 -0.33 0.51 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -28.42 358.70 -7.69 -36.12 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.21 Total: -1.52 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.80 Total: -10.87 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.89 Total: -41.27 kcal Atomic # 8 Polarization: -1.66 SS G_CDS: 0.01 Total: -1.66 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.42 -7.69 -36.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.123 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds