Wall clock time and date at job start Tue Mar 31 2020 12:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.47179 * 2 1 4 4 C 1.50701 * 109.47147 * 240.00362 * 2 1 3 5 5 H 1.08008 * 119.99953 * 239.99242 * 4 2 1 6 6 C 1.37878 * 120.00100 * 59.99688 * 4 2 1 7 7 N 1.31508 * 120.00092 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47209 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46744 * 120.00150 * 8 6 4 11 11 H 1.48497 * 109.47012 * 239.99882 * 8 6 4 12 12 C 1.50700 * 109.47350 * 120.00124 * 2 1 3 13 13 N 1.31137 * 126.54944 * 239.99890 * 12 2 1 14 14 C 1.34495 * 105.60976 * 180.02562 * 13 12 2 15 15 C 1.50698 * 126.28125 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47184 * 90.00218 * 15 14 13 17 17 C 1.52997 * 109.47127 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47269 * 179.97438 * 17 16 15 19 19 C 1.35950 * 117.00394 * 179.97438 * 18 17 16 20 20 C 1.38710 * 120.02568 * 359.71956 * 19 18 17 21 21 C 1.38148 * 119.96392 * 179.78870 * 20 19 18 22 22 C 1.38453 * 120.03541 * 0.49461 * 21 20 19 23 23 F 1.35098 * 119.97462 * 179.72159 * 22 21 20 24 24 C 1.38454 * 120.05656 * 359.73959 * 22 21 20 25 25 C 1.38156 * 120.03255 * 0.02562 * 24 22 21 26 26 N 1.29941 * 107.42634 * 0.24092 * 14 13 12 27 27 O 1.21299 * 110.25491 * 359.58509 * 26 14 13 28 28 H 1.08995 * 109.47079 * 299.99838 * 1 2 3 29 29 H 1.09002 * 109.47393 * 59.99710 * 1 2 3 30 30 H 1.09008 * 109.47179 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00155 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47612 * 330.00273 * 15 14 13 33 33 H 1.09001 * 109.47122 * 210.00104 * 15 14 13 34 34 H 1.09001 * 109.47002 * 299.99404 * 16 15 14 35 35 H 1.08993 * 109.46955 * 59.99842 * 16 15 14 36 36 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 37 37 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 38 38 H 1.07996 * 120.01530 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.98415 * 180.20929 * 21 20 19 40 40 H 1.08000 * 119.98446 * 180.02562 * 24 22 21 41 41 H 1.07996 * 120.01760 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2861 -3.6039 10 1 1.1678 -1.5864 -4.8165 11 1 3.1471 -0.1855 -4.8161 12 6 2.0323 -0.7104 1.2304 13 7 2.7893 -0.2007 2.1721 14 6 2.9819 -1.1936 3.0587 15 6 3.7896 -1.1112 4.3283 16 6 2.8854 -0.6671 5.4800 17 6 3.7053 -0.5841 6.7691 18 8 2.8611 -0.1688 7.8447 19 6 3.4377 -0.0447 9.0695 20 6 4.7868 -0.3228 9.2329 21 6 5.3725 -0.1920 10.4773 22 6 4.6113 0.2065 11.5630 23 9 5.1841 0.3286 12.7805 24 6 3.2636 0.4797 11.4022 25 6 2.6763 0.3545 10.1580 26 7 2.3485 -2.2384 2.6165 27 8 1.7921 -1.9805 1.5700 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7094 1.1619 -3.4844 32 1 4.5957 -0.3888 4.2000 33 1 4.2117 -2.0903 4.5546 34 1 2.4634 0.3121 5.2538 35 1 2.0794 -1.3894 5.6084 36 1 4.1271 -1.5634 6.9952 37 1 4.5117 0.1380 6.6410 38 1 5.3798 -0.6377 8.3871 39 1 6.4236 -0.4052 10.6042 40 1 2.6711 0.7909 12.2498 41 1 1.6249 0.5673 10.0329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596586275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:22 Heat of formation + Delta-G solvation = -24.257189 kcal Electronic energy + Delta-G solvation = -24739.521445 eV Core-core repulsion = 20729.519066 eV Total energy + Delta-G solvation = -4010.002380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -49.82982 -46.39766 -41.11763 -38.46233 -37.28132 -36.87366 -34.91894 -33.52333 -32.24386 -31.50024 -30.39553 -28.21771 -27.37242 -25.22730 -24.84931 -23.94037 -23.26083 -22.48349 -21.45569 -19.34419 -19.11245 -18.45688 -18.27305 -17.93838 -17.60178 -17.34942 -16.86425 -16.51680 -15.90803 -15.71598 -15.61681 -15.06639 -14.94397 -14.71091 -14.53224 -14.20375 -13.81077 -13.68935 -13.56968 -13.50547 -13.21790 -13.04746 -12.87321 -12.58138 -12.49704 -12.33514 -12.29186 -12.19801 -12.06339 -11.84278 -11.75694 -11.55846 -11.32974 -10.66423 -10.56265 -10.19537 -9.12998 -8.21948 -6.38344 0.15384 0.18561 0.27170 1.30551 1.44124 1.47461 1.58027 2.05164 2.10078 2.40332 2.55777 2.83555 3.07932 3.21075 3.32237 3.66898 3.80412 3.84932 3.92136 4.04131 4.12223 4.23305 4.32369 4.37864 4.43069 4.55757 4.64479 4.70903 4.84559 4.88802 4.90167 4.98898 5.01724 5.09359 5.10534 5.11842 5.13834 5.22948 5.41336 5.65073 5.69840 5.83342 6.04498 6.35287 6.63660 7.27385 7.31033 8.83963 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.041167 B = 0.001735 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.995572 B =16133.335182 C =16362.888151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.125 3.875 3 H 0.055 0.945 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.030 3.970 7 N -0.904 5.904 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.235 3.765 13 N -0.526 5.526 14 C 0.168 3.832 15 C -0.016 4.016 16 C -0.105 4.105 17 C 0.063 3.937 18 O -0.328 6.328 19 C 0.111 3.889 20 C -0.182 4.182 21 C -0.113 4.113 22 C 0.036 3.964 23 F -0.150 7.150 24 C -0.112 4.112 25 C -0.135 4.135 26 N -0.418 5.418 27 O 0.051 5.949 28 H 0.034 0.966 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.271 0.729 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -1.537 23.946 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.104 3.896 3 H 0.073 0.927 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.541 5.541 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.016 3.984 13 N -0.261 5.261 14 C -0.106 4.106 15 C -0.055 4.055 16 C -0.144 4.144 17 C -0.011 4.011 18 O -0.243 6.243 19 C 0.065 3.935 20 C -0.201 4.201 21 C -0.132 4.132 22 C 0.017 3.983 23 F -0.129 7.129 24 C -0.131 4.131 25 C -0.154 4.154 26 N -0.134 5.134 27 O 0.001 5.999 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.176 0.824 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.746 -1.837 24.380 25.363 hybrid contribution 0.276 -0.239 -0.984 1.049 sum 7.022 -2.076 23.396 24.515 Atomic orbital electron populations 1.21700 0.94579 1.00716 1.01633 1.17640 0.94678 0.94228 0.83024 0.92713 1.21069 1.33334 1.13243 0.90414 0.92971 1.25578 0.94579 0.95447 1.01492 1.69939 1.36087 1.23094 1.25014 0.85416 0.78376 0.78498 0.78865 1.19763 1.19849 1.20173 1.29835 0.90261 0.81400 0.96866 1.71978 1.19301 1.30566 1.04221 1.26426 0.99392 0.84748 1.00003 1.19939 0.95761 1.05824 0.83928 1.21306 0.98544 1.02799 0.91749 1.22877 0.92928 1.01651 0.83680 1.86058 1.39554 1.83127 1.15515 1.19278 0.92275 0.96546 0.85386 1.21401 0.93890 1.05627 0.99157 1.21200 1.01548 0.99296 0.91136 1.17854 0.92623 1.06930 0.80876 1.91470 1.85105 1.94234 1.42118 1.21166 0.93203 1.00195 0.98532 1.20518 1.01450 1.03448 0.89935 1.74511 1.14814 1.24945 0.99103 1.85236 1.54828 1.30426 1.29428 0.94648 0.89706 0.93997 0.91986 0.86676 0.86685 0.91474 0.91477 0.89342 0.89472 0.82216 0.82643 0.82360 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.95 71.98 0.64 -5.13 16 2 C 0.12 6.09 2.77 -12.29 -0.03 6.05 16 3 H 0.06 2.86 8.14 -2.38 -0.02 2.84 16 4 C -0.54 -28.47 8.55 25.60 0.22 -28.25 16 5 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 6 C 0.03 1.57 5.30 84.66 0.45 2.02 16 7 N -0.90 -47.69 11.32 21.45 0.24 -47.44 16 8 Si 0.96 41.08 29.54 68.60 2.03 43.11 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 12 C 0.23 10.60 6.96 88.38 0.61 11.22 16 13 N -0.53 -21.91 11.55 -303.20 -3.50 -25.41 16 14 C 0.17 5.88 7.47 138.46 1.03 6.92 16 15 C -0.02 -0.35 5.84 29.85 0.17 -0.17 16 16 C -0.11 -2.11 5.57 30.60 0.17 -1.93 16 17 C 0.06 0.91 4.74 71.98 0.34 1.25 16 18 O -0.33 -6.24 10.14 -92.99 -0.94 -7.18 16 19 C 0.11 1.87 6.69 22.49 0.15 2.02 16 20 C -0.18 -2.45 9.04 22.36 0.20 -2.25 16 21 C -0.11 -1.53 10.02 22.30 0.22 -1.31 16 22 C 0.04 0.58 7.30 22.37 0.16 0.75 16 23 F -0.15 -2.69 17.27 44.97 0.78 -1.92 16 24 C -0.11 -1.60 10.02 22.30 0.22 -1.38 16 25 C -0.13 -2.09 9.99 22.36 0.22 -1.87 16 26 N -0.42 -16.44 12.16 -60.33 -0.73 -17.17 16 27 O 0.05 2.23 11.31 74.84 0.85 3.08 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 4.13 6.07 -2.39 -0.01 4.12 16 30 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 0.91 7.65 -2.39 -0.02 0.89 16 37 H 0.09 0.95 7.67 -2.38 -0.02 0.93 16 38 H 0.16 1.38 6.30 -2.91 -0.02 1.36 16 39 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -61.11 358.70 4.56 -56.55 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.05 Total: 8.47 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.80 Total: -12.08 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -3.99 Total: -90.03 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.10 Total: -4.11 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -61.11 4.56 -56.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.289 kcal (2) G-P(sol) polarization free energy of solvation -61.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds