Wall clock time and date at job start Tue Mar 31 2020 12:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47449 * 2 1 4 4 C 1.46504 * 120.00207 * 270.00152 * 3 2 1 5 5 C 1.50702 * 109.47155 * 269.99904 * 4 3 2 6 6 H 1.08008 * 119.99597 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00244 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99756 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00352 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47074 * 89.99391 * 9 7 5 11 11 H 1.48493 * 109.47426 * 209.99942 * 9 7 5 12 12 H 1.48508 * 109.46731 * 329.99951 * 9 7 5 13 13 C 1.34777 * 120.00180 * 89.99497 * 3 2 1 14 14 O 1.21593 * 120.00036 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99789 * 0.02562 * 13 3 2 16 16 C 1.39503 * 119.99848 * 180.02562 * 15 13 3 17 17 C 1.36104 * 126.21486 * 0.28496 * 16 15 13 18 18 C 1.39767 * 107.82336 * 180.14800 * 17 16 15 19 19 C 1.50703 * 125.83807 * 179.86927 * 18 17 16 20 20 F 1.39905 * 109.47157 * 184.71385 * 19 18 17 21 21 F 1.39900 * 109.47159 * 64.71685 * 19 18 17 22 22 F 1.39897 * 109.47274 * 304.71376 * 19 18 17 23 23 N 1.30842 * 108.32193 * 359.60150 * 18 17 16 24 24 N 1.35244 * 126.21486 * 179.97438 * 16 15 13 25 25 C 1.46503 * 126.04630 * 0.03338 * 24 16 15 26 26 H 1.08999 * 109.46964 * 60.00099 * 1 2 3 27 27 H 1.08993 * 109.46790 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46836 * 300.00198 * 1 2 3 29 29 H 1.09004 * 109.47518 * 239.99803 * 2 1 3 30 30 H 1.09004 * 109.47255 * 120.00285 * 2 1 3 31 31 H 1.09006 * 109.46789 * 29.99466 * 4 3 2 32 32 H 1.08999 * 109.47427 * 149.99204 * 4 3 2 33 33 H 0.96998 * 119.99739 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99907 * 359.97438 * 15 13 3 35 35 H 1.07993 * 126.08916 * 359.97438 * 17 16 15 36 36 H 1.09000 * 109.47237 * 269.98733 * 25 24 16 37 37 H 1.09005 * 109.47109 * 29.98249 * 25 24 16 38 38 H 1.09002 * 109.47126 * 149.98007 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3430 1.2307 -1.0957 7 6 4.1496 2.3904 -2.8774 8 7 3.3495 3.1266 -3.6175 9 14 5.9139 2.0975 -3.4164 10 1 5.9778 0.8767 -4.2596 11 1 6.3930 3.2651 -4.1987 12 1 6.7738 1.9175 -2.2190 13 6 2.2430 2.0165 1.1672 14 8 2.6479 3.1631 1.1671 15 7 2.0187 1.3811 2.3344 16 6 2.2507 2.0389 3.5425 17 6 2.6956 3.3167 3.6898 18 6 2.7944 3.5801 5.0589 19 6 3.2511 4.8763 5.6773 20 9 3.3216 4.7307 7.0670 21 9 2.3410 5.8905 5.3604 22 9 4.5147 5.2111 5.1789 23 7 2.4170 2.5109 5.7118 24 7 2.0687 1.5247 4.7801 25 6 1.5925 0.1747 5.0912 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6756 3.5171 -4.4434 34 1 1.6954 0.4666 2.3344 35 1 2.9330 4.0037 2.8911 36 1 0.5052 0.1816 5.1681 37 1 1.8963 -0.5094 4.2988 38 1 2.0217 -0.1527 6.0382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597152881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:18 Heat of formation + Delta-G solvation = -81.546888 kcal Electronic energy + Delta-G solvation = -27443.784737 eV Core-core repulsion = 22909.361311 eV Total energy + Delta-G solvation = -4534.423426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -50.07023 -47.59070 -47.57106 -41.72029 -39.68058 -35.75718 -34.98047 -33.54449 -32.75140 -30.36009 -29.42255 -28.38136 -27.00828 -25.28235 -23.41707 -23.25248 -21.51114 -20.93903 -19.44043 -18.79600 -18.45238 -18.18590 -17.10149 -16.55348 -16.52724 -16.02273 -15.74960 -14.90213 -14.70064 -14.43172 -14.37551 -14.19301 -13.99187 -13.90051 -13.72504 -13.71752 -13.59276 -13.41180 -13.09873 -12.86179 -12.68863 -12.25012 -12.18501 -11.93103 -11.33247 -11.11496 -11.08721 -10.98571 -10.83949 -10.63504 -10.18555 -9.75224 -9.46250 -9.30552 -8.49746 -8.25801 -7.79325 -6.11077 -4.16264 1.46617 1.73591 2.42528 2.52099 3.04692 3.26636 3.34620 3.38783 3.66963 3.67916 3.97315 4.13591 4.40858 4.43744 4.44788 4.81556 5.02804 5.05024 5.20719 5.24660 5.31718 5.37174 5.49127 5.65631 5.76600 5.93267 6.02020 6.28008 6.42472 6.58394 6.92036 7.10551 7.29748 7.34941 7.51182 7.85153 8.13063 8.30896 8.81502 8.97858 9.49358 10.96907 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.003844 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.199381 B = 7282.172273 C = 8621.088029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.599 5.599 4 C 0.261 3.739 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.705 3.295 14 O -0.548 6.548 15 N -0.667 5.667 16 C 0.349 3.651 17 C -0.242 4.242 18 C -0.005 4.005 19 C 0.559 3.441 20 F -0.171 7.171 21 F -0.166 7.166 22 F -0.164 7.164 23 N -0.247 5.247 24 N -0.377 5.377 25 C 0.097 3.903 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.190 0.810 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.037 -7.284 15.993 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.334 5.334 4 C 0.142 3.858 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.406 3.594 14 O -0.422 6.422 15 N -0.320 5.320 16 C 0.127 3.873 17 C -0.275 4.275 18 C -0.171 4.171 19 C 0.502 3.498 20 F -0.153 7.153 21 F -0.148 7.148 22 F -0.145 7.145 23 N -0.072 5.072 24 N -0.167 5.167 25 C -0.044 4.044 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.206 0.794 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.970 -6.964 16.822 19.161 hybrid contribution 0.911 -0.417 -1.062 1.460 sum -5.060 -7.381 15.761 18.124 Atomic orbital electron populations 1.22266 0.96401 1.01681 1.02737 1.21434 0.93738 0.84155 1.02646 1.47639 1.66622 1.13323 1.05808 1.19328 0.96483 0.93614 0.76389 1.21416 0.96841 1.32284 1.06416 0.92423 1.24907 0.97883 0.94763 0.96332 1.69922 1.35751 1.33162 1.14326 0.86493 0.84592 0.77703 0.78618 1.20670 1.21008 1.19878 1.15675 0.79523 0.84789 0.79449 1.90858 1.50545 1.16210 1.84582 1.42427 1.70108 1.17172 1.02263 1.17577 0.98547 0.91461 0.79713 1.21401 1.14336 0.96706 0.95015 1.21820 1.06104 0.94414 0.94745 1.16840 0.75247 0.82282 0.75415 1.93210 1.96126 1.95818 1.30124 1.93241 1.67081 1.61832 1.92628 1.93251 1.40870 1.93038 1.87384 1.77370 1.21158 0.96503 1.12207 1.48449 1.53999 1.12506 1.01747 1.21937 1.00682 0.77687 1.04062 0.91466 0.91874 0.93194 0.89011 0.92689 0.94470 0.93425 0.92598 0.75958 0.79354 0.90160 0.89624 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.10 1.42 5.89 -4.04 -0.02 1.40 16 3 N -0.60 -11.47 2.46 -180.79 -0.44 -11.91 16 4 C 0.26 6.33 5.16 -5.19 -0.03 6.31 16 5 C -0.53 -14.29 9.39 -34.44 -0.32 -14.61 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 9 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.70 13.75 8.24 -86.92 -0.72 13.03 16 14 O -0.55 -12.99 13.05 5.28 0.07 -12.93 16 15 N -0.67 -9.76 5.28 -15.84 -0.08 -9.84 16 16 C 0.35 5.38 7.66 -153.15 -1.17 4.20 16 17 C -0.24 -4.23 9.58 -39.78 -0.38 -4.62 16 18 C 0.00 -0.08 6.50 -82.44 -0.54 -0.61 16 19 C 0.56 8.14 3.50 36.01 0.13 8.27 16 20 F -0.17 -2.38 17.14 2.25 0.04 -2.34 16 21 F -0.17 -2.42 17.30 2.25 0.04 -2.38 16 22 F -0.16 -2.45 17.30 2.25 0.04 -2.41 16 23 N -0.25 -3.70 12.34 33.65 0.42 -3.29 16 24 N -0.38 -4.85 4.02 -67.17 -0.27 -5.12 16 25 C 0.10 0.69 11.28 59.85 0.68 1.37 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 30 H 0.05 0.57 6.36 -51.93 -0.33 0.24 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.40 4.31 5.69 -40.82 -0.23 4.07 16 35 H 0.19 3.75 5.82 -52.49 -0.31 3.44 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.42 7.50 -51.93 -0.39 0.03 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -32.80 341.70 -5.57 -38.36 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.14 Total: 0.46 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -2.10 Total: 14.84 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.35 Total: -55.01 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.12 Total: -7.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.80 -5.57 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597152881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.182 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds