Wall clock time and date at job start Tue Mar 31 2020 12:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47449 * 2 1 4 4 C 1.46504 * 120.00207 * 270.00152 * 3 2 1 5 5 C 1.50702 * 109.47155 * 269.99904 * 4 3 2 6 6 H 1.08008 * 119.99597 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00244 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99756 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00352 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47074 * 89.99391 * 9 7 5 11 11 H 1.48493 * 109.47426 * 209.99942 * 9 7 5 12 12 H 1.48508 * 109.46731 * 329.99951 * 9 7 5 13 13 C 1.34777 * 120.00180 * 89.99497 * 3 2 1 14 14 O 1.21593 * 120.00036 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99789 * 0.02562 * 13 3 2 16 16 C 1.39503 * 119.99848 * 180.02562 * 15 13 3 17 17 C 1.36104 * 126.21486 * 0.28496 * 16 15 13 18 18 C 1.39767 * 107.82336 * 180.14800 * 17 16 15 19 19 C 1.50703 * 125.83807 * 179.86927 * 18 17 16 20 20 F 1.39905 * 109.47157 * 184.71385 * 19 18 17 21 21 F 1.39900 * 109.47159 * 64.71685 * 19 18 17 22 22 F 1.39897 * 109.47274 * 304.71376 * 19 18 17 23 23 N 1.30842 * 108.32193 * 359.60150 * 18 17 16 24 24 N 1.35244 * 126.21486 * 179.97438 * 16 15 13 25 25 C 1.46503 * 126.04630 * 0.03338 * 24 16 15 26 26 H 1.08999 * 109.46964 * 60.00099 * 1 2 3 27 27 H 1.08993 * 109.46790 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46836 * 300.00198 * 1 2 3 29 29 H 1.09004 * 109.47518 * 239.99803 * 2 1 3 30 30 H 1.09004 * 109.47255 * 120.00285 * 2 1 3 31 31 H 1.09006 * 109.46789 * 29.99466 * 4 3 2 32 32 H 1.08999 * 109.47427 * 149.99204 * 4 3 2 33 33 H 0.96998 * 119.99739 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99907 * 359.97438 * 15 13 3 35 35 H 1.07993 * 126.08916 * 359.97438 * 17 16 15 36 36 H 1.09000 * 109.47237 * 269.98733 * 25 24 16 37 37 H 1.09005 * 109.47109 * 29.98249 * 25 24 16 38 38 H 1.09002 * 109.47126 * 149.98007 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3430 1.2307 -1.0957 7 6 4.1496 2.3904 -2.8774 8 7 3.3495 3.1266 -3.6175 9 14 5.9139 2.0975 -3.4164 10 1 5.9778 0.8767 -4.2596 11 1 6.3930 3.2651 -4.1987 12 1 6.7738 1.9175 -2.2190 13 6 2.2430 2.0165 1.1672 14 8 2.6479 3.1631 1.1671 15 7 2.0187 1.3811 2.3344 16 6 2.2507 2.0389 3.5425 17 6 2.6956 3.3167 3.6898 18 6 2.7944 3.5801 5.0589 19 6 3.2511 4.8763 5.6773 20 9 3.3216 4.7307 7.0670 21 9 2.3410 5.8905 5.3604 22 9 4.5147 5.2111 5.1789 23 7 2.4170 2.5109 5.7118 24 7 2.0687 1.5247 4.7801 25 6 1.5925 0.1747 5.0912 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6756 3.5171 -4.4434 34 1 1.6954 0.4666 2.3344 35 1 2.9330 4.0037 2.8911 36 1 0.5052 0.1816 5.1681 37 1 1.8963 -0.5094 4.2988 38 1 2.0217 -0.1527 6.0382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597152881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:18 Heat of formation + Delta-G solvation = -102.302730 kcal Electronic energy + Delta-G solvation = -27444.684778 eV Core-core repulsion = 22909.361311 eV Total energy + Delta-G solvation = -4535.323467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.24216 -48.75922 -48.74388 -42.92424 -41.13285 -37.24795 -36.36629 -34.86689 -34.45377 -31.67124 -30.74277 -29.37629 -28.78432 -26.32031 -25.22197 -24.44136 -22.81826 -22.15533 -20.81312 -20.04815 -19.63037 -19.37218 -18.67425 -18.33395 -17.64420 -17.24312 -17.12880 -16.47110 -16.21668 -15.69803 -15.59475 -15.48070 -15.22550 -15.16441 -14.89630 -14.89114 -14.72759 -14.63051 -14.46768 -13.83424 -13.71038 -13.65880 -13.31538 -13.28619 -13.08602 -12.71310 -12.51557 -12.37242 -12.28581 -12.19275 -11.91029 -11.70955 -11.07686 -10.60754 -10.36173 -9.73145 -9.24144 -8.19978 -6.33674 0.28626 0.62272 1.11531 1.27922 1.38892 1.42575 1.51960 1.89309 2.17591 2.40335 2.51553 2.77661 2.91880 3.11189 3.26929 3.62113 4.01591 4.11709 4.22646 4.34749 4.35583 4.47590 4.53937 4.60976 4.74861 4.84041 4.95856 5.02217 5.22106 5.25699 5.37608 5.55206 5.59237 5.79912 5.89604 6.07176 6.17777 6.74773 6.89174 7.31400 7.47949 8.86769 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.003844 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.199381 B = 7282.172273 C = 8621.088029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.278 3.722 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.963 3.037 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.276 1.276 13 C 0.702 3.298 14 O -0.599 6.599 15 N -0.641 5.641 16 C 0.346 3.654 17 C -0.272 4.272 18 C -0.014 4.014 19 C 0.563 3.437 20 F -0.165 7.165 21 F -0.168 7.168 22 F -0.169 7.169 23 N -0.247 5.247 24 N -0.358 5.358 25 C 0.079 3.921 26 H 0.042 0.958 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.033 0.967 32 H 0.003 0.997 33 H 0.267 0.733 34 H 0.425 0.575 35 H 0.157 0.843 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 -10.301 17.349 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.337 5.337 4 C 0.157 3.843 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.187 4.187 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.201 1.201 13 C 0.403 3.597 14 O -0.476 6.476 15 N -0.296 5.296 16 C 0.123 3.877 17 C -0.305 4.305 18 C -0.179 4.179 19 C 0.507 3.493 20 F -0.146 7.146 21 F -0.149 7.149 22 F -0.150 7.150 23 N -0.073 5.073 24 N -0.148 5.148 25 C -0.059 4.059 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.076 0.924 34 H 0.267 0.733 35 H 0.175 0.825 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.271 -10.078 18.230 21.754 hybrid contribution 0.925 0.453 -1.412 1.747 sum -5.346 -9.625 16.819 20.102 Atomic orbital electron populations 1.22199 0.94232 1.03881 1.01900 1.21823 0.95490 0.80986 1.04348 1.47469 1.66770 1.15296 1.04141 1.18738 0.95361 0.91627 0.78600 1.21707 0.97934 1.32000 1.06409 0.92795 1.25750 1.01914 0.94512 0.96532 1.70035 1.37625 1.34117 1.14801 0.85489 0.79505 0.78115 0.78127 1.18800 1.20963 1.20066 1.15788 0.79121 0.84301 0.80517 1.90852 1.52576 1.18641 1.85578 1.41827 1.69401 1.17726 1.00626 1.17398 0.98523 0.91152 0.80664 1.21212 1.16320 0.97795 0.95169 1.21800 1.06881 0.95137 0.94073 1.16729 0.75014 0.82019 0.75579 1.93217 1.96089 1.95780 1.29538 1.93235 1.67124 1.61886 1.92688 1.93239 1.41176 1.93061 1.87513 1.77311 1.20679 0.96560 1.12710 1.48833 1.52157 1.13640 1.00122 1.22578 1.02383 0.74895 1.06087 0.93870 0.88038 0.92528 0.89689 0.88631 0.94881 0.97921 0.92443 0.73306 0.82510 0.87714 0.86758 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.24 71.98 0.74 -2.47 16 2 C 0.10 2.38 5.89 86.38 0.51 2.89 16 3 N -0.60 -23.06 2.46 -844.17 -2.07 -25.13 16 4 C 0.28 14.01 5.16 85.63 0.44 14.45 16 5 C -0.54 -29.73 9.39 25.60 0.24 -29.49 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.68 5.46 84.65 0.46 1.15 16 8 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 9 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.70 27.56 8.24 179.05 1.48 29.03 16 14 O -0.60 -29.83 13.05 -4.01 -0.05 -29.88 16 15 N -0.64 -17.61 5.28 -322.30 -1.70 -19.32 16 16 C 0.35 10.23 7.66 131.31 1.01 11.24 16 17 C -0.27 -9.74 9.58 22.14 0.21 -9.53 16 18 C -0.01 -0.43 6.50 43.08 0.28 -0.15 16 19 C 0.56 16.55 3.50 71.24 0.25 16.80 16 20 F -0.17 -4.48 17.14 44.97 0.77 -3.71 16 21 F -0.17 -4.98 17.30 44.97 0.78 -4.20 16 22 F -0.17 -5.16 17.30 44.97 0.78 -4.38 16 23 N -0.25 -6.98 12.34 -47.44 -0.59 -7.56 16 24 N -0.36 -8.24 4.02 -366.43 -1.47 -9.71 16 25 C 0.08 0.76 11.28 127.77 1.44 2.20 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 2.27 8.07 -2.38 -0.02 2.25 16 30 H 0.10 1.59 6.36 -2.39 -0.02 1.57 16 31 H 0.03 1.68 8.07 -2.38 -0.02 1.66 16 32 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 33 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.43 7.45 5.69 -92.71 -0.53 6.92 16 35 H 0.16 6.71 5.82 -2.91 -0.02 6.69 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 0.49 7.50 -2.38 -0.02 0.48 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -75.46 341.70 6.40 -69.06 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.60 Total: 6.87 kcal Atomic # 6 Polarization: 29.05 SS G_CDS: 7.06 Total: 36.11 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -5.55 Total: -115.75 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.05 Total: -29.88 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 2.33 Total: -12.29 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -75.46 6.40 -69.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597152881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.244 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds