Wall clock time and date at job start Tue Mar 31 2020 13:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48499 * 109.47131 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47068 * 120.00293 * 3 2 1 6 6 H 1.48498 * 109.47100 * 240.00246 * 3 2 1 7 7 C 1.37880 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99761 * 185.61049 * 7 2 1 9 9 C 1.50702 * 119.99838 * 5.61447 * 7 2 1 10 10 C 1.52998 * 115.54727 * 279.42877 * 9 7 2 11 11 N 1.46500 * 109.47221 * 295.27017 * 10 9 7 12 12 C 1.35216 * 125.75054 * 123.94398 * 11 10 9 13 13 C 1.36514 * 106.04085 * 179.97438 * 12 11 10 14 14 C 1.48417 * 126.90693 * 179.97438 * 13 12 11 15 15 C 1.40391 * 120.23514 * 5.00472 * 14 13 12 16 16 N 1.30882 * 121.56384 * 179.97438 * 15 14 13 17 17 C 1.33745 * 121.66752 * 359.97438 * 16 15 14 18 18 C 1.40583 * 120.84597 * 179.97438 * 17 16 15 19 19 C 1.36098 * 119.79552 * 180.02562 * 18 17 16 20 20 C 1.39354 * 121.08242 * 0.02562 * 19 18 17 21 21 C 1.36126 * 120.84330 * 359.97438 * 20 19 18 22 22 C 1.40516 * 119.62739 * 0.02562 * 21 20 19 23 23 C 1.38636 * 120.23562 * 184.72602 * 14 13 12 24 24 N 1.34510 * 106.18153 * 0.02562 * 13 12 11 25 25 N 1.28610 * 108.79100 * 359.73580 * 24 13 12 26 26 C 1.52998 * 117.49453 * 133.72438 * 9 7 2 27 27 C 1.52999 * 117.49849 * 65.10218 * 9 7 2 28 28 H 0.97006 * 119.99925 * 355.32054 * 1 2 3 29 29 H 1.08995 * 109.47309 * 55.27362 * 10 9 7 30 30 H 1.09005 * 109.46812 * 175.27377 * 10 9 7 31 31 H 1.08001 * 126.97960 * 0.02562 * 12 11 10 32 32 H 1.07995 * 119.22027 * 359.97252 * 15 14 13 33 33 H 1.07996 * 120.10425 * 359.97438 * 18 17 16 34 34 H 1.07995 * 119.45771 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.57567 * 180.02562 * 20 19 18 36 36 H 1.08004 * 120.19073 * 179.97438 * 21 20 19 37 37 H 1.08007 * 121.00901 * 359.97438 * 23 14 13 38 38 H 1.08992 * 117.50459 * 359.97438 * 26 9 7 39 39 H 1.09005 * 117.49681 * 145.02105 * 26 9 7 40 40 H 1.09003 * 117.49430 * 214.97864 * 27 9 7 41 41 H 1.09003 * 117.49840 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0806 -1.1963 0.0909 9 6 1.2564 -2.4960 -0.1288 10 6 0.6181 -3.0199 1.1592 11 7 1.6684 -3.3467 2.1268 12 6 1.7713 -2.8484 3.3796 13 6 2.8868 -3.4186 3.9220 14 6 3.4305 -3.1928 5.2844 15 6 2.7284 -2.3960 6.2027 16 7 3.1834 -2.1801 7.4107 17 6 4.3386 -2.7076 7.8305 18 6 4.8114 -2.4639 9.1318 19 6 5.9900 -3.0110 9.5366 20 6 6.7425 -3.8129 8.6807 21 6 6.3178 -4.0718 7.4136 22 6 5.1055 -3.5235 6.9616 23 6 4.6324 -3.7719 5.6612 24 7 3.3946 -4.2253 2.9730 25 7 2.6454 -4.1603 1.9297 26 6 1.7993 -3.5280 -1.1193 27 6 0.5164 -2.7591 -1.4418 28 1 -0.4850 0.8373 0.0685 29 1 -0.0362 -2.2551 1.5776 30 1 0.0363 -3.9148 0.9384 31 1 1.1056 -2.1431 3.8549 32 1 1.7906 -1.9506 5.9052 33 1 4.2416 -1.8438 9.8080 34 1 6.3483 -2.8199 10.5373 35 1 7.6742 -4.2351 9.0274 36 1 6.9096 -4.6944 6.7589 37 1 5.1898 -4.3931 4.9756 38 1 2.6972 -3.2652 -1.6785 39 1 1.7018 -4.5806 -0.8534 40 1 -0.4251 -3.3059 -1.3880 41 1 0.5703 -1.9904 -2.2127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600970719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:50 Heat of formation + Delta-G solvation = 171.655802 kcal Electronic energy + Delta-G solvation = -25153.620568 eV Core-core repulsion = 21615.175589 eV Total energy + Delta-G solvation = -3538.444979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63812 -40.70903 -37.28278 -36.94066 -34.05611 -33.03671 -32.17093 -31.76107 -30.20678 -29.01580 -27.21187 -25.58745 -24.51510 -23.97589 -22.28657 -21.45592 -21.19377 -21.13689 -19.43246 -18.18876 -17.30333 -17.06918 -16.21077 -15.89232 -15.54835 -14.87815 -14.72702 -14.71583 -14.39195 -14.21209 -13.89813 -13.83794 -13.26215 -13.16586 -12.99094 -12.17700 -11.96380 -11.86944 -11.74218 -11.50551 -11.23703 -11.11703 -11.01797 -10.84499 -10.63922 -10.50606 -10.35889 -10.07650 -9.54943 -9.48274 -9.24917 -9.05817 -8.67051 -8.53191 -8.40346 -7.91351 -6.27907 -4.34859 0.29985 0.66364 1.86494 2.26195 2.66595 3.05810 3.18983 3.23880 3.28493 3.32817 4.13814 4.18888 4.23734 4.44091 4.58010 4.69868 4.78255 4.91490 4.99444 5.03759 5.10850 5.14113 5.24517 5.40296 5.52312 5.57100 5.70275 5.73126 5.85991 5.94396 6.01599 6.06194 6.19667 6.26779 6.30058 6.36798 6.42858 6.48309 6.62385 6.67099 6.77224 6.85537 7.09255 7.22299 7.33302 7.67017 7.87179 8.15886 8.68607 9.06219 9.33662 10.80277 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.003134 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.989629 B = 8931.141050 C = 9739.748495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.496 4.496 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.147 3.853 11 N -0.244 5.244 12 C -0.019 4.019 13 C -0.011 4.011 14 C -0.036 4.036 15 C 0.150 3.850 16 N -0.474 5.474 17 C 0.120 3.880 18 C -0.092 4.092 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.092 4.092 22 C -0.097 4.097 23 C -0.041 4.041 24 N -0.277 5.277 25 N -0.067 5.067 26 C -0.190 4.190 27 C -0.150 4.150 28 H 0.265 0.735 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.283 -6.044 14.474 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.027 3.973 11 N -0.034 5.034 12 C -0.173 4.173 13 C -0.149 4.149 14 C -0.041 4.041 15 C -0.024 4.024 16 N -0.181 5.181 17 C -0.002 4.002 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.111 4.111 22 C -0.099 4.099 23 C -0.068 4.068 24 N -0.143 5.143 25 N -0.047 5.047 26 C -0.227 4.227 27 C -0.189 4.189 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.203 0.797 32 H 0.179 0.821 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.165 0.835 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.330 -6.356 14.001 16.274 hybrid contribution 0.184 1.372 -0.068 1.386 sum 5.514 -4.984 13.933 15.791 Atomic orbital electron populations 1.69911 1.05824 1.27392 1.48589 1.24959 0.94870 0.99012 0.94000 0.86666 0.79779 0.82751 0.79035 1.21007 1.20112 1.19981 1.20346 0.92918 0.88339 1.51755 0.92320 1.18894 0.98990 0.94547 0.85217 1.22076 0.85434 0.99901 0.89873 1.47399 1.19409 1.26069 1.10528 1.23453 1.02055 1.04432 0.87357 1.19930 0.96807 1.02982 0.95211 1.18666 0.95371 0.98858 0.91165 1.22967 0.98677 0.92977 0.87809 1.67963 1.12608 1.21252 1.16256 1.18921 0.91301 0.95365 0.94573 1.20788 0.96312 0.99967 0.94025 1.20874 0.94645 0.97226 0.99949 1.20883 1.00164 0.98983 0.94016 1.21043 0.94738 0.98920 0.96376 1.18818 0.96667 0.99752 0.94699 1.21791 0.94373 0.96421 0.94220 1.75166 1.22247 1.19728 0.97167 1.78159 0.96344 1.11560 1.18640 1.22935 0.97709 0.95827 1.06252 1.22626 0.93389 1.01694 1.01144 0.92559 0.86885 0.90916 0.79683 0.82052 0.84880 0.85534 0.85679 0.85160 0.83467 0.90166 0.90881 0.91447 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.40 13.10 55.43 0.73 -21.68 16 2 C 0.08 1.91 5.42 -17.82 -0.10 1.81 16 3 Si 0.89 20.26 29.54 -169.99 -5.02 15.23 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.50 -12.65 8.71 -34.44 -0.30 -12.95 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.02 0.55 1.31 -155.66 -0.20 0.35 16 10 C 0.15 2.88 6.27 -4.04 -0.03 2.85 16 11 N -0.24 -4.76 3.32 -60.98 -0.20 -4.96 16 12 C -0.02 -0.33 10.96 -16.68 -0.18 -0.51 16 13 C -0.01 -0.20 6.98 -83.12 -0.58 -0.78 16 14 C -0.04 -0.56 5.89 -104.75 -0.62 -1.17 16 15 C 0.15 2.09 10.72 -17.15 -0.18 1.91 16 16 N -0.47 -6.90 10.31 -10.72 -0.11 -7.01 16 17 C 0.12 1.65 6.61 -84.81 -0.56 1.09 16 18 C -0.09 -1.03 9.97 -39.47 -0.39 -1.42 16 19 C -0.11 -0.96 9.94 -39.94 -0.40 -1.36 16 20 C -0.12 -1.10 9.96 -39.93 -0.40 -1.49 16 21 C -0.09 -0.97 9.77 -39.48 -0.39 -1.36 16 22 C -0.10 -1.29 5.74 -106.81 -0.61 -1.90 16 23 C -0.04 -0.58 9.58 -38.55 -0.37 -0.95 16 24 N -0.28 -5.50 12.21 33.06 0.40 -5.09 16 25 N -0.07 -1.40 12.83 60.35 0.77 -0.62 16 26 C -0.19 -3.93 9.85 -26.73 -0.26 -4.19 16 27 C -0.15 -3.16 9.67 -26.73 -0.26 -3.42 16 28 H 0.26 6.52 8.32 -40.82 -0.34 6.18 16 29 H 0.11 2.24 8.06 -51.93 -0.42 1.82 16 30 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.19 2.53 7.42 -52.49 -0.39 2.14 16 32 H 0.16 1.85 7.12 -52.49 -0.37 1.47 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 36 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.15 1.99 7.95 -52.48 -0.42 1.58 16 38 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -29.14 359.58 -8.79 -37.93 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.95 Total: 4.29 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -5.83 Total: -23.50 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 1.59 Total: -39.37 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.14 -8.79 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600970719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.585 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds