Wall clock time and date at job start Tue Mar 31 2020 13:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48499 * 109.47131 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47068 * 120.00293 * 3 2 1 6 6 H 1.48498 * 109.47100 * 240.00246 * 3 2 1 7 7 C 1.37880 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99761 * 185.61049 * 7 2 1 9 9 C 1.50702 * 119.99838 * 5.61447 * 7 2 1 10 10 C 1.52998 * 115.54727 * 279.42877 * 9 7 2 11 11 N 1.46500 * 109.47221 * 295.27017 * 10 9 7 12 12 C 1.35216 * 125.75054 * 123.94398 * 11 10 9 13 13 C 1.36514 * 106.04085 * 179.97438 * 12 11 10 14 14 C 1.48417 * 126.90693 * 179.97438 * 13 12 11 15 15 C 1.40391 * 120.23514 * 5.00472 * 14 13 12 16 16 N 1.30882 * 121.56384 * 179.97438 * 15 14 13 17 17 C 1.33745 * 121.66752 * 359.97438 * 16 15 14 18 18 C 1.40583 * 120.84597 * 179.97438 * 17 16 15 19 19 C 1.36098 * 119.79552 * 180.02562 * 18 17 16 20 20 C 1.39354 * 121.08242 * 0.02562 * 19 18 17 21 21 C 1.36126 * 120.84330 * 359.97438 * 20 19 18 22 22 C 1.40516 * 119.62739 * 0.02562 * 21 20 19 23 23 C 1.38636 * 120.23562 * 184.72602 * 14 13 12 24 24 N 1.34510 * 106.18153 * 0.02562 * 13 12 11 25 25 N 1.28610 * 108.79100 * 359.73580 * 24 13 12 26 26 C 1.52998 * 117.49453 * 133.72438 * 9 7 2 27 27 C 1.52999 * 117.49849 * 65.10218 * 9 7 2 28 28 H 0.97006 * 119.99925 * 355.32054 * 1 2 3 29 29 H 1.08995 * 109.47309 * 55.27362 * 10 9 7 30 30 H 1.09005 * 109.46812 * 175.27377 * 10 9 7 31 31 H 1.08001 * 126.97960 * 0.02562 * 12 11 10 32 32 H 1.07995 * 119.22027 * 359.97252 * 15 14 13 33 33 H 1.07996 * 120.10425 * 359.97438 * 18 17 16 34 34 H 1.07995 * 119.45771 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.57567 * 180.02562 * 20 19 18 36 36 H 1.08004 * 120.19073 * 179.97438 * 21 20 19 37 37 H 1.08007 * 121.00901 * 359.97438 * 23 14 13 38 38 H 1.08992 * 117.50459 * 359.97438 * 26 9 7 39 39 H 1.09005 * 117.49681 * 145.02105 * 26 9 7 40 40 H 1.09003 * 117.49430 * 214.97864 * 27 9 7 41 41 H 1.09003 * 117.49840 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0806 -1.1963 0.0909 9 6 1.2564 -2.4960 -0.1288 10 6 0.6181 -3.0199 1.1592 11 7 1.6684 -3.3467 2.1268 12 6 1.7713 -2.8484 3.3796 13 6 2.8868 -3.4186 3.9220 14 6 3.4305 -3.1928 5.2844 15 6 2.7284 -2.3960 6.2027 16 7 3.1834 -2.1801 7.4107 17 6 4.3386 -2.7076 7.8305 18 6 4.8114 -2.4639 9.1318 19 6 5.9900 -3.0110 9.5366 20 6 6.7425 -3.8129 8.6807 21 6 6.3178 -4.0718 7.4136 22 6 5.1055 -3.5235 6.9616 23 6 4.6324 -3.7719 5.6612 24 7 3.3946 -4.2253 2.9730 25 7 2.6454 -4.1603 1.9297 26 6 1.7993 -3.5280 -1.1193 27 6 0.5164 -2.7591 -1.4418 28 1 -0.4850 0.8373 0.0685 29 1 -0.0362 -2.2551 1.5776 30 1 0.0363 -3.9148 0.9384 31 1 1.1056 -2.1431 3.8549 32 1 1.7906 -1.9506 5.9052 33 1 4.2416 -1.8438 9.8080 34 1 6.3483 -2.8199 10.5373 35 1 7.6742 -4.2351 9.0274 36 1 6.9096 -4.6944 6.7589 37 1 5.1898 -4.3931 4.9756 38 1 2.6972 -3.2652 -1.6785 39 1 1.7018 -4.5806 -0.8534 40 1 -0.4251 -3.3059 -1.3880 41 1 0.5703 -1.9904 -2.2127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600970719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:50 Heat of formation + Delta-G solvation = 157.179884 kcal Electronic energy + Delta-G solvation = -25154.248291 eV Core-core repulsion = 21615.175589 eV Total energy + Delta-G solvation = -3539.072702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.06585 -41.66094 -38.73071 -38.06387 -35.29985 -34.33365 -34.06396 -32.88235 -31.09664 -30.17265 -28.75430 -27.47702 -25.54674 -25.02151 -23.33235 -22.94368 -22.58749 -22.49975 -21.09477 -19.21968 -18.61909 -18.05154 -17.73212 -17.21401 -16.98352 -16.68945 -15.95840 -15.67358 -15.57216 -15.41595 -15.24400 -14.86571 -14.80709 -14.15619 -14.03602 -13.84591 -13.50939 -13.07721 -12.93572 -12.84027 -12.72472 -12.50139 -12.45694 -12.34126 -12.09146 -11.98817 -11.87920 -11.63386 -11.03335 -10.80224 -10.58458 -10.50138 -10.46665 -10.14262 -9.47362 -9.00525 -8.21351 -6.31962 -0.65438 -0.30036 0.78459 0.98437 1.35056 1.38818 1.44254 1.53724 1.63078 2.22555 2.35596 3.06122 3.12168 3.16056 3.36671 3.46568 3.63896 3.67982 3.85088 3.94621 4.00745 4.12101 4.13375 4.21121 4.35100 4.38979 4.44921 4.54342 4.56869 4.66760 4.81196 4.92980 4.94033 5.00138 5.10679 5.16456 5.19787 5.25909 5.40772 5.44690 5.51752 5.55608 5.58551 5.66823 5.81534 5.93598 6.29888 6.69948 6.85729 7.37406 7.60591 8.85543 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.003134 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.989629 B = 8931.141050 C = 9739.748495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.047 3.953 3 Si 0.933 3.067 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.511 4.511 8 H 0.030 0.970 9 C 0.005 3.995 10 C 0.155 3.845 11 N -0.251 5.251 12 C -0.023 4.023 13 C -0.006 4.006 14 C -0.061 4.061 15 C 0.145 3.855 16 N -0.489 5.489 17 C 0.099 3.901 18 C -0.112 4.112 19 C -0.091 4.091 20 C -0.113 4.113 21 C -0.104 4.104 22 C -0.114 4.114 23 C -0.042 4.042 24 N -0.297 5.297 25 N -0.098 5.098 26 C -0.180 4.180 27 C -0.143 4.143 28 H 0.267 0.733 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.217 0.783 32 H 0.181 0.819 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -6.204 16.716 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.155 4.155 3 Si 0.760 3.240 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.549 4.549 8 H 0.048 0.952 9 C 0.003 3.997 10 C 0.035 3.965 11 N -0.041 5.041 12 C -0.177 4.177 13 C -0.145 4.145 14 C -0.065 4.065 15 C -0.029 4.029 16 N -0.196 5.196 17 C -0.022 4.022 18 C -0.131 4.131 19 C -0.110 4.110 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.069 4.069 24 N -0.162 5.162 25 N -0.077 5.077 26 C -0.217 4.217 27 C -0.181 4.181 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.234 0.766 32 H 0.198 0.802 33 H 0.161 0.839 34 H 0.181 0.819 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.016 -6.524 16.238 18.505 hybrid contribution 0.150 1.399 -0.600 1.529 sum 6.165 -5.125 15.639 17.574 Atomic orbital electron populations 1.69939 1.06145 1.27864 1.48795 1.25353 0.95522 1.00707 0.93944 0.86006 0.78921 0.80754 0.78302 1.19976 1.20691 1.20572 1.20377 0.91809 0.90381 1.52297 0.95207 1.18950 0.99862 0.93975 0.86865 1.21917 0.85242 1.00747 0.88558 1.47399 1.19272 1.26268 1.11180 1.24010 1.02460 1.04515 0.86670 1.20281 0.96573 1.01972 0.95676 1.18686 0.96444 1.00812 0.90538 1.23192 0.99273 0.92852 0.87565 1.67995 1.13375 1.21848 1.16366 1.19380 0.91328 0.95669 0.95851 1.21041 0.97629 1.01148 0.93277 1.21352 0.93197 0.95093 1.01375 1.21355 1.01025 0.97636 0.93015 1.21334 0.94009 0.99226 0.97683 1.19012 0.97923 1.00429 0.94201 1.21916 0.94099 0.95968 0.94913 1.75100 1.22687 1.20761 0.97700 1.78101 0.97265 1.12911 1.19415 1.22875 0.97097 0.96424 1.05313 1.22578 0.94525 1.01290 0.99756 0.92383 0.87189 0.88562 0.76647 0.80203 0.83871 0.81911 0.82119 0.83458 0.83578 0.91481 0.89195 0.89000 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.91 13.10 21.45 0.28 -44.63 16 2 C 0.05 2.40 5.42 84.66 0.46 2.86 16 3 Si 0.93 41.69 29.54 68.60 2.03 43.72 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.51 -26.47 8.71 25.60 0.22 -26.25 16 8 H 0.03 1.68 7.82 -2.91 -0.02 1.65 16 9 C 0.00 0.21 1.31 -52.93 -0.07 0.14 16 10 C 0.16 5.98 6.27 86.38 0.54 6.52 16 11 N -0.25 -9.77 3.32 -346.84 -1.15 -10.93 16 12 C -0.02 -0.80 10.96 83.77 0.92 0.12 16 13 C -0.01 -0.23 6.98 41.04 0.29 0.06 16 14 C -0.06 -1.87 5.89 -19.95 -0.12 -1.99 16 15 C 0.14 4.05 10.72 85.36 0.92 4.97 16 16 N -0.49 -14.11 10.31 -187.84 -1.94 -16.05 16 17 C 0.10 2.64 6.61 40.29 0.27 2.91 16 18 C -0.11 -2.28 9.97 22.34 0.22 -2.06 16 19 C -0.09 -1.30 9.94 22.04 0.22 -1.08 16 20 C -0.11 -1.59 9.96 22.05 0.22 -1.37 16 21 C -0.10 -1.97 9.77 22.33 0.22 -1.76 16 22 C -0.11 -2.93 5.74 -21.28 -0.12 -3.06 16 23 C -0.04 -1.21 9.58 22.94 0.22 -0.99 16 24 N -0.30 -12.03 12.21 -49.31 -0.60 -12.64 16 25 N -0.10 -4.12 12.83 37.02 0.47 -3.65 16 26 C -0.18 -7.41 9.85 30.59 0.30 -7.11 16 27 C -0.14 -5.95 9.67 30.59 0.30 -5.65 16 28 H 0.27 12.94 8.32 -92.70 -0.77 12.17 16 29 H 0.11 4.28 8.06 -2.39 -0.02 4.26 16 30 H 0.10 3.20 8.10 -2.38 -0.02 3.18 16 31 H 0.22 5.70 7.42 -2.91 -0.02 5.68 16 32 H 0.18 4.04 7.12 -2.91 -0.02 4.02 16 33 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.15 4.08 7.95 -2.91 -0.02 4.06 16 38 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -63.65 359.58 5.14 -58.51 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.05 Total: 19.41 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 5.00 Total: -33.75 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -2.93 Total: -87.89 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -63.65 5.14 -58.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600970719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.686 kcal (2) G-P(sol) polarization free energy of solvation -63.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds