Wall clock time and date at job start Tue Mar 31 2020 13:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48501 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47310 * 300.00017 * 3 2 1 6 6 H 1.48508 * 109.47122 * 60.00176 * 3 2 1 7 7 C 1.37877 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00132 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47180 * 184.81713 * 9 7 2 11 11 C 1.46960 * 111.00485 * 64.49376 * 10 9 7 12 12 C 1.53040 * 109.38663 * 176.82003 * 11 10 9 13 13 N 1.46963 * 109.36380 * 58.39033 * 12 11 10 14 14 C 1.46899 * 110.99932 * 176.81109 * 13 12 11 15 15 H 1.08997 * 110.73078 * 56.59278 * 14 13 12 16 16 C 1.54347 * 110.82317 * 179.97438 * 14 13 12 17 17 C 1.51377 * 105.17328 * 144.57022 * 16 14 13 18 18 C 1.38505 * 130.37525 * 162.84074 * 17 16 14 19 19 C 1.38082 * 120.23279 * 180.02562 * 18 17 16 20 20 C 1.38377 * 119.92094 * 359.92385 * 19 18 17 21 21 Cl 1.73599 * 120.04495 * 180.02562 * 20 19 18 22 22 C 1.38216 * 119.90490 * 0.03550 * 20 19 18 23 23 C 1.38228 * 109.75410 * 342.82282 * 17 16 14 24 24 C 1.51372 * 109.75976 * 359.97438 * 23 17 16 25 25 C 1.46955 * 110.87957 * 300.67521 * 13 12 11 26 26 C 1.46955 * 111.02068 * 300.67923 * 10 9 7 27 27 H 0.96994 * 119.99710 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46951 * 64.81379 * 9 7 2 29 29 H 1.09008 * 109.46851 * 304.82003 * 9 7 2 30 30 H 1.09003 * 109.48706 * 56.83530 * 11 10 9 31 31 H 1.08998 * 109.48325 * 296.80353 * 11 10 9 32 32 H 1.09003 * 109.48999 * 178.35402 * 12 11 10 33 33 H 1.09000 * 109.49465 * 298.42361 * 12 11 10 34 34 H 1.08990 * 110.30387 * 263.49790 * 16 14 13 35 35 H 1.09006 * 110.29900 * 25.64812 * 16 14 13 36 36 H 1.07996 * 119.88246 * 359.96280 * 18 17 16 37 37 H 1.07998 * 120.03915 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.89623 * 179.97438 * 22 20 19 39 39 H 1.09003 * 110.30684 * 258.27625 * 24 23 17 40 40 H 1.08998 * 110.30128 * 136.12125 * 24 23 17 41 41 H 1.08993 * 109.49010 * 179.28627 * 25 13 12 42 42 H 1.09001 * 109.49088 * 299.33713 * 25 13 12 43 43 H 1.08995 * 109.47321 * 63.19715 * 26 10 9 44 44 H 1.09005 * 109.50713 * 303.15757 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2014 -3.6132 0.1174 11 6 2.9000 -3.5762 1.4098 12 6 3.8199 -4.7938 1.5251 13 7 4.7785 -4.7876 0.4111 14 6 5.7290 -5.9014 0.5283 15 1 5.2025 -6.8544 0.5787 16 6 6.7333 -5.8913 -0.6437 17 6 8.0419 -6.3651 -0.0483 18 6 9.1850 -6.8478 -0.6637 19 6 10.2752 -7.2271 0.0941 20 6 10.2269 -7.1235 1.4731 21 17 11.5959 -7.5989 2.4289 22 6 9.0871 -6.6412 2.0884 23 6 7.9929 -6.2619 1.3292 24 6 6.6483 -5.7113 1.7537 25 6 4.0798 -4.8253 -0.8812 26 6 3.1599 -3.6075 -0.9964 27 1 -0.4849 0.8400 -0.0004 28 1 0.6910 -2.5954 -0.9296 29 1 0.5609 -2.5202 0.8440 30 1 2.1696 -3.5942 2.2187 31 1 3.4935 -2.6644 1.4762 32 1 4.3609 -4.7528 2.4705 33 1 3.2234 -5.7053 1.4863 34 1 6.4058 -6.5734 -1.4282 35 1 6.8416 -4.8817 -1.0402 36 1 9.2234 -6.9287 -1.7399 37 1 11.1648 -7.6035 -0.3890 38 1 9.0494 -6.5608 3.1648 39 1 6.7340 -4.6534 2.0020 40 1 6.2625 -6.2706 2.6060 41 1 4.8102 -4.8071 -1.6901 42 1 3.4865 -5.7373 -0.9474 43 1 3.7564 -2.6961 -0.9578 44 1 2.6192 -3.6484 -1.9421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:05 Heat of formation + Delta-G solvation = 27.313282 kcal Electronic energy + Delta-G solvation = -24288.280511 eV Core-core repulsion = 20844.683865 eV Total energy + Delta-G solvation = -3443.596647 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57725 -38.70494 -37.05456 -35.94336 -33.75226 -32.18944 -31.78877 -30.44286 -28.93158 -27.49832 -26.87198 -24.74703 -22.94606 -22.53980 -21.73707 -21.06296 -20.37790 -19.14425 -17.01583 -16.51997 -16.16268 -16.00813 -15.44553 -14.85438 -14.33664 -14.19517 -14.16604 -14.02449 -13.78201 -13.64412 -13.41401 -13.02564 -12.96151 -12.52684 -12.07651 -11.98641 -11.77290 -11.67946 -11.49805 -11.36409 -11.06046 -11.05203 -10.97009 -10.81446 -10.64980 -10.49074 -10.29874 -10.03937 -9.81895 -9.51785 -9.13928 -8.66743 -8.43646 -8.14389 -7.17469 -6.02862 -4.11717 0.88025 1.00809 1.83835 3.26548 3.32465 3.34957 3.39172 3.91370 4.11056 4.40993 4.45495 4.63326 4.75672 4.93653 4.99645 5.02262 5.13644 5.27594 5.28260 5.36303 5.39965 5.56961 5.61242 5.63444 5.74413 5.78644 5.85780 5.89619 5.92600 5.94510 5.96655 6.02580 6.14759 6.27952 6.34543 6.52703 6.60272 6.76792 6.85764 7.19074 7.28958 7.36257 7.52546 7.90124 8.04921 8.26634 8.30764 8.99350 9.55378 11.02236 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.002451 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.235530 B =11422.871657 C =11802.261506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.186 3.814 10 N -0.544 5.544 11 C 0.065 3.935 12 C 0.059 3.941 13 N -0.528 5.528 14 C 0.085 3.915 15 H 0.053 0.947 16 C -0.078 4.078 17 C -0.084 4.084 18 C -0.096 4.096 19 C -0.113 4.113 20 C -0.037 4.037 21 Cl -0.075 7.075 22 C -0.099 4.099 23 C -0.077 4.077 24 C -0.074 4.074 25 C 0.057 3.943 26 C 0.064 3.936 27 H 0.261 0.739 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.049 0.951 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.570 -16.244 1.422 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.061 3.939 10 N -0.269 5.269 11 C -0.064 4.064 12 C -0.069 4.069 13 N -0.253 5.253 14 C -0.024 4.024 15 H 0.071 0.929 16 C -0.115 4.115 17 C -0.085 4.085 18 C -0.114 4.114 19 C -0.132 4.132 20 C -0.063 4.063 21 Cl -0.046 7.046 22 C -0.118 4.118 23 C -0.078 4.078 24 C -0.112 4.112 25 C -0.070 4.070 26 C -0.065 4.065 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.505 -16.169 1.508 24.620 hybrid contribution 0.623 1.002 0.109 1.185 sum 19.128 -15.167 1.617 24.465 Atomic orbital electron populations 1.69956 1.06028 1.26693 1.50401 1.24972 0.94753 0.99179 0.94969 0.86595 0.80219 0.83945 0.77615 1.19769 1.20996 1.21000 1.21808 0.93486 0.91983 1.51314 0.92205 1.19735 0.90855 0.85561 0.97759 1.62680 1.16630 1.46704 1.00837 1.21911 0.95467 0.95855 0.93195 1.22240 0.92875 0.98684 0.93119 1.62254 1.17910 1.41717 1.03396 1.22234 0.92799 0.93101 0.94288 0.92918 1.21173 0.90149 1.02445 0.97731 1.20717 0.95699 0.97556 0.94523 1.20573 0.91794 0.98978 1.00075 1.20903 0.99362 1.01324 0.91568 1.20705 0.89707 1.04008 0.91900 1.98366 1.43405 1.90630 1.72194 1.20455 0.91194 0.99743 1.00405 1.20529 0.95490 0.97745 0.94003 1.21124 0.89770 1.02309 0.97963 1.22259 0.95721 0.98660 0.90398 1.21934 0.93477 0.95910 0.95221 0.92904 0.95437 0.94864 0.91387 0.93344 0.91181 0.94701 0.90570 0.88448 0.85225 0.84924 0.85156 0.88366 0.90620 0.91095 0.94737 0.93252 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.55 -14.83 7.67 -34.44 -0.26 -15.09 16 8 H 0.06 1.63 5.82 -52.49 -0.31 1.32 16 9 C 0.19 4.74 5.14 -4.98 -0.03 4.71 16 10 N -0.54 -11.43 4.92 -235.91 -1.16 -12.59 16 11 C 0.06 1.23 5.32 -3.77 -0.02 1.21 16 12 C 0.06 0.88 5.48 -3.77 -0.02 0.86 16 13 N -0.53 -7.48 4.52 -224.80 -1.02 -8.49 16 14 C 0.08 0.97 2.76 -66.30 -0.18 0.78 16 15 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 16 C -0.08 -0.80 5.08 -26.85 -0.14 -0.94 16 17 C -0.08 -0.87 6.14 -104.19 -0.64 -1.50 16 18 C -0.10 -0.86 10.04 -39.54 -0.40 -1.26 16 19 C -0.11 -1.00 9.83 -39.59 -0.39 -1.39 16 20 C -0.04 -0.36 6.32 -39.54 -0.25 -0.61 16 21 Cl -0.07 -0.68 28.96 -51.86 -1.50 -2.18 16 22 C -0.10 -0.99 9.82 -39.50 -0.39 -1.38 16 23 C -0.08 -0.81 6.14 -104.21 -0.64 -1.45 16 24 C -0.07 -0.78 5.39 -26.84 -0.14 -0.93 16 25 C 0.06 0.85 5.35 -3.76 -0.02 0.83 16 26 C 0.06 1.20 5.24 -3.77 -0.02 1.18 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.91 8.12 -51.92 -0.42 0.49 16 30 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.05 1.03 6.95 -51.93 -0.36 0.67 16 32 H 0.07 0.92 7.30 -51.93 -0.38 0.54 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.09 7.63 -51.93 -0.40 0.69 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.91 6.67 -51.93 -0.35 0.57 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 1.04 6.45 -51.93 -0.34 0.71 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -28.84 358.34 -12.95 -41.78 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.75 Total: -1.62 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -3.63 Total: -13.30 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -1.44 Total: -46.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.84 -12.95 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.096 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds