Wall clock time and date at job start Tue Mar 31 2020 13:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48501 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47310 * 300.00017 * 3 2 1 6 6 H 1.48508 * 109.47122 * 60.00176 * 3 2 1 7 7 C 1.37877 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00132 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47180 * 184.81713 * 9 7 2 11 11 C 1.46960 * 111.00485 * 64.49376 * 10 9 7 12 12 C 1.53040 * 109.38663 * 176.82003 * 11 10 9 13 13 N 1.46963 * 109.36380 * 58.39033 * 12 11 10 14 14 C 1.46899 * 110.99932 * 176.81109 * 13 12 11 15 15 H 1.08997 * 110.73078 * 56.59278 * 14 13 12 16 16 C 1.54347 * 110.82317 * 179.97438 * 14 13 12 17 17 C 1.51377 * 105.17328 * 144.57022 * 16 14 13 18 18 C 1.38505 * 130.37525 * 162.84074 * 17 16 14 19 19 C 1.38082 * 120.23279 * 180.02562 * 18 17 16 20 20 C 1.38377 * 119.92094 * 359.92385 * 19 18 17 21 21 Cl 1.73599 * 120.04495 * 180.02562 * 20 19 18 22 22 C 1.38216 * 119.90490 * 0.03550 * 20 19 18 23 23 C 1.38228 * 109.75410 * 342.82282 * 17 16 14 24 24 C 1.51372 * 109.75976 * 359.97438 * 23 17 16 25 25 C 1.46955 * 110.87957 * 300.67521 * 13 12 11 26 26 C 1.46955 * 111.02068 * 300.67923 * 10 9 7 27 27 H 0.96994 * 119.99710 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46951 * 64.81379 * 9 7 2 29 29 H 1.09008 * 109.46851 * 304.82003 * 9 7 2 30 30 H 1.09003 * 109.48706 * 56.83530 * 11 10 9 31 31 H 1.08998 * 109.48325 * 296.80353 * 11 10 9 32 32 H 1.09003 * 109.48999 * 178.35402 * 12 11 10 33 33 H 1.09000 * 109.49465 * 298.42361 * 12 11 10 34 34 H 1.08990 * 110.30387 * 263.49790 * 16 14 13 35 35 H 1.09006 * 110.29900 * 25.64812 * 16 14 13 36 36 H 1.07996 * 119.88246 * 359.96280 * 18 17 16 37 37 H 1.07998 * 120.03915 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.89623 * 179.97438 * 22 20 19 39 39 H 1.09003 * 110.30684 * 258.27625 * 24 23 17 40 40 H 1.08998 * 110.30128 * 136.12125 * 24 23 17 41 41 H 1.08993 * 109.49010 * 179.28627 * 25 13 12 42 42 H 1.09001 * 109.49088 * 299.33713 * 25 13 12 43 43 H 1.08995 * 109.47321 * 63.19715 * 26 10 9 44 44 H 1.09005 * 109.50713 * 303.15757 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2014 -3.6132 0.1174 11 6 2.9000 -3.5762 1.4098 12 6 3.8199 -4.7938 1.5251 13 7 4.7785 -4.7876 0.4111 14 6 5.7290 -5.9014 0.5283 15 1 5.2025 -6.8544 0.5787 16 6 6.7333 -5.8913 -0.6437 17 6 8.0419 -6.3651 -0.0483 18 6 9.1850 -6.8478 -0.6637 19 6 10.2752 -7.2271 0.0941 20 6 10.2269 -7.1235 1.4731 21 17 11.5959 -7.5989 2.4289 22 6 9.0871 -6.6412 2.0884 23 6 7.9929 -6.2619 1.3292 24 6 6.6483 -5.7113 1.7537 25 6 4.0798 -4.8253 -0.8812 26 6 3.1599 -3.6075 -0.9964 27 1 -0.4849 0.8400 -0.0004 28 1 0.6910 -2.5954 -0.9296 29 1 0.5609 -2.5202 0.8440 30 1 2.1696 -3.5942 2.2187 31 1 3.4935 -2.6644 1.4762 32 1 4.3609 -4.7528 2.4705 33 1 3.2234 -5.7053 1.4863 34 1 6.4058 -6.5734 -1.4282 35 1 6.8416 -4.8817 -1.0402 36 1 9.2234 -6.9287 -1.7399 37 1 11.1648 -7.6035 -0.3890 38 1 9.0494 -6.5608 3.1648 39 1 6.7340 -4.6534 2.0020 40 1 6.2625 -6.2706 2.6060 41 1 4.8102 -4.8071 -1.6901 42 1 3.4865 -5.7373 -0.9474 43 1 3.7564 -2.6961 -0.9578 44 1 2.6192 -3.6484 -1.9421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601315419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:05 Heat of formation + Delta-G solvation = 10.986605 kcal Electronic energy + Delta-G solvation = -24288.988489 eV Core-core repulsion = 20844.683865 eV Total energy + Delta-G solvation = -3444.304625 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39672 -39.94672 -37.94294 -37.04118 -35.16082 -33.97240 -32.55187 -31.75950 -30.18609 -28.43227 -28.27001 -26.39830 -24.27715 -23.72901 -23.07865 -21.83969 -21.38488 -20.62530 -18.49578 -17.79778 -17.19620 -16.96450 -16.62633 -16.28052 -15.80129 -15.58681 -15.42022 -15.24888 -14.86807 -14.60078 -14.44500 -14.21039 -13.84089 -13.78553 -13.47672 -13.38490 -12.98858 -12.95895 -12.66110 -12.61854 -12.42921 -12.25571 -12.16008 -12.02931 -12.01461 -11.83066 -11.72697 -11.65952 -11.43591 -11.26192 -10.60905 -9.84433 -9.41550 -9.27046 -8.99140 -8.15162 -6.34458 0.15638 0.30786 1.13651 1.35551 1.37342 1.49164 2.37410 2.61045 2.84995 3.09494 3.33530 3.40813 3.64585 3.97195 3.98204 4.07172 4.16570 4.24665 4.28943 4.33676 4.44021 4.54438 4.59082 4.60262 4.67365 4.76316 4.83727 4.88533 4.90217 4.95241 5.06898 5.09397 5.15790 5.18954 5.23299 5.26677 5.27382 5.30452 5.35548 5.60537 5.74612 5.82516 6.04267 6.10472 6.16363 6.33265 6.54986 6.86995 7.37038 8.87264 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.002451 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.235530 B =11422.871657 C =11802.261506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.199 3.801 10 N -0.544 5.544 11 C 0.066 3.934 12 C 0.071 3.929 13 N -0.538 5.538 14 C 0.087 3.913 15 H 0.060 0.940 16 C -0.073 4.073 17 C -0.094 4.094 18 C -0.096 4.096 19 C -0.114 4.114 20 C -0.047 4.047 21 Cl -0.072 7.072 22 C -0.107 4.107 23 C -0.089 4.089 24 C -0.070 4.070 25 C 0.070 3.930 26 C 0.064 3.936 27 H 0.265 0.735 28 H 0.003 0.997 29 H 0.006 0.994 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.138 0.862 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.024 0.976 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.811 -17.274 1.118 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.268 5.268 11 C -0.063 4.063 12 C -0.057 4.057 13 N -0.263 5.263 14 C -0.022 4.022 15 H 0.078 0.922 16 C -0.110 4.110 17 C -0.095 4.095 18 C -0.114 4.114 19 C -0.132 4.132 20 C -0.073 4.073 21 Cl -0.043 7.043 22 C -0.126 4.126 23 C -0.090 4.090 24 C -0.107 4.107 25 C -0.058 4.058 26 C -0.065 4.065 27 H 0.074 0.926 28 H 0.021 0.979 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.155 0.845 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.767 -17.218 1.206 27.003 hybrid contribution -0.043 1.274 0.211 1.292 sum 20.723 -15.945 1.417 26.186 Atomic orbital electron populations 1.70071 1.07531 1.27761 1.51350 1.25812 0.95599 1.02819 0.94634 0.85523 0.78921 0.79511 0.77828 1.19285 1.20315 1.20410 1.21993 0.93348 0.92865 1.50805 0.92567 1.19394 0.91268 0.86869 0.95214 1.62618 1.17241 1.44259 1.02634 1.21932 0.95540 0.96974 0.91855 1.22088 0.92581 0.96438 0.94601 1.62205 1.17818 1.43633 1.02652 1.22255 0.92334 0.92092 0.95475 0.92207 1.21110 0.89937 1.02369 0.97562 1.20816 0.96121 0.98092 0.94470 1.20839 0.91193 0.98103 1.01284 1.21179 1.00045 1.00693 0.91311 1.20866 0.89794 1.04179 0.92464 1.98366 1.43177 1.90590 1.72212 1.20584 0.91266 0.99838 1.00925 1.20560 0.95579 0.98445 0.94397 1.21051 0.89903 1.01776 0.97995 1.22120 0.95558 0.96389 0.91752 1.21967 0.93247 0.97066 0.94185 0.92640 0.97879 0.97584 0.92023 0.95953 0.88957 0.94097 0.89016 0.89326 0.83042 0.83070 0.84462 0.89567 0.89516 0.88605 0.94108 0.95798 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.55 -30.71 7.67 25.60 0.20 -30.51 16 8 H 0.06 3.13 5.82 -2.91 -0.02 3.11 16 9 C 0.20 10.57 5.14 85.56 0.44 11.01 16 10 N -0.54 -23.34 4.92 -900.29 -4.43 -27.77 16 11 C 0.07 2.53 5.32 86.31 0.46 2.99 16 12 C 0.07 2.02 5.48 86.30 0.47 2.49 16 13 N -0.54 -14.33 4.52 -865.12 -3.91 -18.24 16 14 C 0.09 1.77 2.76 45.83 0.13 1.89 16 15 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 16 C -0.07 -1.30 5.08 30.52 0.15 -1.15 16 17 C -0.09 -1.71 6.14 -19.59 -0.12 -1.83 16 18 C -0.10 -1.46 10.04 22.30 0.22 -1.24 16 19 C -0.11 -1.74 9.83 22.27 0.22 -1.52 16 20 C -0.05 -0.82 6.32 22.30 0.14 -0.67 16 21 Cl -0.07 -1.19 28.96 -2.72 -0.08 -1.27 16 22 C -0.11 -1.96 9.82 22.32 0.22 -1.74 16 23 C -0.09 -1.71 6.14 -19.60 -0.12 -1.83 16 24 C -0.07 -1.34 5.39 30.52 0.16 -1.18 16 25 C 0.07 1.95 5.35 86.31 0.46 2.41 16 26 C 0.06 2.43 5.24 86.31 0.45 2.89 16 27 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.01 0.35 8.12 -2.38 -0.02 0.33 16 30 H 0.06 2.39 8.13 -2.39 -0.02 2.38 16 31 H 0.02 0.97 6.95 -2.39 -0.02 0.95 16 32 H 0.09 2.24 7.30 -2.39 -0.02 2.22 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.77 7.63 -2.38 -0.02 1.75 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 2.23 6.67 -2.39 -0.02 2.21 16 42 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.02 1.02 6.45 -2.39 -0.02 1.01 16 44 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -62.98 358.34 -1.17 -64.15 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.99 Total: 8.86 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.95 Total: -16.92 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -8.05 Total: -101.13 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -62.98 -1.17 -64.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.134 kcal (2) G-P(sol) polarization free energy of solvation -62.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds